Wall clock time and date at job start Tue Mar 31 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48495 * 109.47367 * 269.99487 * 3 2 1 5 5 H 1.48503 * 109.47252 * 29.99805 * 3 2 1 6 6 H 1.48506 * 109.46988 * 149.99620 * 3 2 1 7 7 C 1.38625 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99428 * 180.02562 * 7 2 1 9 9 O 1.34809 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.35777 * 117.00407 * 174.95950 * 9 7 2 11 11 C 1.38914 * 120.00212 * 185.07434 * 10 9 7 12 12 C 1.37985 * 120.00495 * 179.72614 * 11 10 9 13 13 C 1.38950 * 119.99965 * 0.55014 * 12 11 10 14 14 N 1.39882 * 120.00738 * 179.69986 * 13 12 11 15 15 C 1.34775 * 119.99990 * 215.16291 * 14 13 12 16 16 O 1.21740 * 120.00140 * 355.49693 * 15 14 13 17 17 C 1.46442 * 120.00203 * 175.50094 * 15 14 13 18 18 C 1.37805 * 125.96170 * 179.71660 * 17 15 14 19 19 C 1.39831 * 106.77364 * 179.84737 * 18 17 15 20 20 C 1.36565 * 107.10247 * 0.40942 * 19 18 17 21 21 C 1.47661 * 125.65767 * 179.70914 * 20 19 18 22 22 C 1.39673 * 120.12378 * 359.73489 * 21 20 19 23 23 C 1.37874 * 119.86813 * 179.78880 * 22 21 20 24 24 C 1.38613 * 120.12781 * 0.49769 * 23 22 21 25 25 F 1.35099 * 119.87601 * 179.72138 * 24 23 22 26 26 C 1.38624 * 120.25554 * 359.73321 * 24 23 22 27 27 C 1.37876 * 120.12129 * 0.03204 * 26 24 23 28 28 O 1.34361 * 108.68490 * 359.74364 * 20 19 18 29 29 C 1.38955 * 119.98741 * 359.72506 * 13 12 11 30 30 C 1.37990 * 119.99520 * 0.02562 * 29 13 12 31 31 H 0.96999 * 119.99424 * 0.02562 * 1 2 3 32 32 H 1.07997 * 119.99142 * 359.97438 * 11 10 9 33 33 H 1.08006 * 120.00368 * 180.27780 * 12 11 10 34 34 H 0.96998 * 119.99722 * 35.16848 * 14 13 12 35 35 H 1.08000 * 126.61743 * 359.97438 * 18 17 15 36 36 H 1.08007 * 126.45100 * 180.12089 * 19 18 17 37 37 H 1.08001 * 120.06159 * 0.03342 * 22 21 20 38 38 H 1.08003 * 119.93243 * 180.23288 * 23 22 21 39 39 H 1.08001 * 119.93889 * 180.02562 * 26 24 23 40 40 H 1.07999 * 120.06346 * 179.97438 * 27 26 24 41 41 H 1.07996 * 120.00012 * 179.97438 * 29 13 12 42 42 H 1.08005 * 119.99493 * 179.97438 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4472 2.6527 0.7000 6 1 3.5474 1.4402 0.7002 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3349 -2.3680 0.0005 10 6 2.0703 -3.5045 -0.1052 11 6 1.4353 -4.7349 -0.2177 12 6 2.1826 -5.8893 -0.3309 13 6 3.5705 -5.8223 -0.3208 14 7 4.3282 -6.9931 -0.4292 15 6 5.4935 -7.1059 0.2385 16 8 5.9273 -6.1597 0.8699 17 6 6.2379 -8.3665 0.2045 18 6 7.4382 -8.6148 0.8343 19 6 7.7827 -9.9375 0.5392 20 6 6.7958 -10.4410 -0.2591 21 6 6.7528 -11.8078 -0.8163 22 6 7.7844 -12.7089 -0.5432 23 6 7.7367 -13.9852 -1.0627 24 6 6.6729 -14.3713 -1.8629 25 9 6.6341 -15.6214 -2.3738 26 6 5.6486 -13.4797 -2.1413 27 6 5.6833 -12.2024 -1.6234 28 8 5.8708 -9.4862 -0.4541 29 6 4.2055 -4.5920 -0.2025 30 6 3.4578 -3.4373 -0.0945 31 1 -0.4849 0.8401 -0.0004 32 1 0.3566 -4.7874 -0.2207 33 1 1.6889 -6.8455 -0.4229 34 1 4.0150 -7.7237 -0.9850 35 1 8.0029 -7.9221 1.4407 36 1 8.6657 -10.4608 0.8752 37 1 8.6158 -12.4077 0.0768 38 1 8.5320 -14.6840 -0.8491 39 1 4.8219 -13.7861 -2.7651 40 1 4.8850 -11.5084 -1.8412 41 1 5.2842 -4.5397 -0.1942 42 1 3.9515 -2.4811 -0.0021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016066096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:28 Heat of formation + Delta-G solvation = -31.250087 kcal Electronic energy + Delta-G solvation = -29713.893653 eV Core-core repulsion = 25120.276293 eV Total energy + Delta-G solvation = -4593.617360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.105 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.44655 -42.99884 -40.10566 -39.40498 -38.64329 -36.58035 -34.25770 -33.55405 -32.43904 -32.19125 -31.77501 -30.26483 -29.30038 -27.66869 -25.39620 -24.35196 -23.92655 -22.71413 -22.13570 -21.59036 -21.12490 -20.22091 -18.92663 -18.27552 -17.94741 -17.43976 -17.01084 -16.76598 -16.72181 -16.39468 -16.12102 -15.17061 -14.93590 -14.66664 -14.51397 -14.30014 -14.12184 -14.05940 -13.71628 -13.63856 -13.60958 -13.37990 -13.32863 -13.07221 -12.92942 -12.58866 -12.54050 -11.80724 -11.65479 -11.62176 -11.58690 -11.04321 -10.82059 -10.51143 -10.45128 -10.14683 -9.91931 -9.79093 -9.77293 -9.25385 -8.74437 -8.35473 -8.25640 -6.99899 -6.47245 -4.04669 -0.07846 0.60249 1.01467 1.97327 2.11337 2.13825 2.26550 3.05781 3.07330 3.11682 3.14320 3.18702 3.20056 3.63350 3.94472 3.96123 4.09999 4.22927 4.48207 4.50215 4.56100 4.61026 4.75178 5.07045 5.09702 5.22074 5.25763 5.28013 5.30680 5.44766 5.48496 5.62219 5.64117 5.66514 5.71230 5.98793 6.04101 6.11391 6.18722 6.25490 6.45964 6.66592 6.81685 6.94696 7.02489 7.25723 7.39489 7.55608 7.70264 7.97706 8.12997 8.98426 9.66781 10.70407 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.024753 B = 0.001480 C = 0.001412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.893809 B =18918.446231 C =19821.122428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.149 3.851 11 C -0.178 4.178 12 C -0.087 4.087 13 C 0.026 3.974 14 N -0.644 5.644 15 C 0.592 3.408 16 O -0.503 6.503 17 C -0.061 4.061 18 C -0.118 4.118 19 C -0.194 4.194 20 C 0.051 3.949 21 C -0.031 4.031 22 C -0.065 4.065 23 C -0.150 4.150 24 C 0.107 3.893 25 F -0.136 7.136 26 C -0.149 4.149 27 C -0.069 4.069 28 O -0.156 6.156 29 C -0.061 4.061 30 C -0.221 4.221 31 H 0.270 0.730 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.406 0.594 35 H 0.166 0.834 36 H 0.160 0.840 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.126 0.874 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.237 -27.495 -2.886 31.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.094 3.906 11 C -0.198 4.198 12 C -0.107 4.107 13 C -0.066 4.066 14 N -0.288 5.288 15 C 0.379 3.621 16 O -0.380 6.380 17 C -0.113 4.113 18 C -0.139 4.139 19 C -0.213 4.213 20 C -0.001 4.001 21 C -0.031 4.031 22 C -0.083 4.083 23 C -0.168 4.168 24 C 0.087 3.913 25 F -0.115 7.115 26 C -0.168 4.168 27 C -0.087 4.087 28 O -0.051 6.051 29 C -0.081 4.081 30 C -0.241 4.241 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.241 0.759 35 H 0.184 0.816 36 H 0.178 0.822 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.144 0.856 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.822 -26.667 -2.593 30.619 hybrid contribution 0.456 0.141 -0.274 0.550 sum 15.278 -26.526 -2.867 30.745 Atomic orbital electron populations 1.70051 1.05961 1.27740 1.45818 1.25298 0.95861 0.98873 0.96456 0.85699 0.78987 0.79963 0.78745 1.19847 1.20238 1.19105 1.21357 0.91908 0.80766 1.52700 0.88922 1.83971 1.34343 1.11456 1.77950 1.19432 0.90284 0.88130 0.92705 1.19990 0.99548 0.89755 1.10473 1.20356 0.91275 0.97583 1.01519 1.17215 0.89922 0.84889 1.14605 1.43030 1.21047 1.17967 1.46727 1.16494 0.81154 0.84436 0.80062 1.90918 1.67663 1.36448 1.42974 1.22553 0.98767 0.86944 1.03049 1.22123 0.94761 0.96525 1.00481 1.21736 1.01328 0.95490 1.02784 1.20523 0.89789 0.88884 1.00927 1.17799 0.96654 0.88900 0.99779 1.20943 0.97465 0.91631 0.98272 1.21058 0.98816 0.97465 0.99510 1.17906 0.96373 0.80251 0.96733 1.91529 1.96439 1.38376 1.85121 1.21133 0.99268 0.93590 1.02817 1.21208 0.97390 0.95555 0.94550 1.84049 1.43561 1.19481 1.58048 1.20857 0.99831 0.90273 0.97163 1.21103 0.93548 0.98777 1.10647 0.91980 0.85910 0.86604 0.75876 0.81647 0.82234 0.84063 0.83886 0.83958 0.84027 0.85619 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.03 13.67 55.48 0.76 -24.28 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.50 29.55 -169.99 -5.02 15.47 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.89 9.48 30.88 0.29 -10.59 16 8 H 0.09 2.40 5.20 -52.48 -0.27 2.13 16 9 O -0.17 -4.92 9.75 0.03 0.00 -4.92 16 10 C 0.15 3.57 6.65 -39.08 -0.26 3.31 16 11 C -0.18 -3.64 9.98 -39.42 -0.39 -4.04 16 12 C -0.09 -1.50 9.96 -39.41 -0.39 -1.90 16 13 C 0.03 0.45 6.30 -83.65 -0.53 -0.07 16 14 N -0.64 -9.13 5.33 -11.07 -0.06 -9.19 16 15 C 0.59 8.81 7.62 -12.96 -0.10 8.71 16 16 O -0.50 -9.13 14.30 5.15 0.07 -9.06 16 17 C -0.06 -0.73 7.16 -36.44 -0.26 -0.99 16 18 C -0.12 -1.22 10.65 -39.14 -0.42 -1.64 16 19 C -0.19 -1.57 10.21 -39.59 -0.40 -1.97 16 20 C 0.05 0.44 7.02 -36.34 -0.25 0.19 16 21 C -0.03 -0.22 5.87 -104.98 -0.62 -0.84 16 22 C -0.07 -0.34 9.55 -39.18 -0.37 -0.72 16 23 C -0.15 -0.79 10.01 -39.58 -0.40 -1.18 16 24 C 0.11 0.70 7.30 -39.30 -0.29 0.41 16 25 F -0.14 -1.02 17.26 2.25 0.04 -0.98 16 26 C -0.15 -0.90 10.01 -39.57 -0.40 -1.30 16 27 C -0.07 -0.45 9.71 -39.18 -0.38 -0.83 16 28 O -0.16 -1.61 10.13 3.62 0.04 -1.57 16 29 C -0.06 -1.22 8.69 -39.41 -0.34 -1.57 16 30 C -0.22 -4.92 9.16 -39.42 -0.36 -5.28 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 33 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 34 H 0.41 4.43 8.58 -40.82 -0.35 4.08 16 35 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.16 0.78 7.23 -52.48 -0.38 0.40 16 37 H 0.14 0.43 6.96 -52.49 -0.37 0.06 16 38 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.14 0.80 7.90 -52.49 -0.41 0.38 16 41 H 0.13 2.45 6.22 -52.49 -0.33 2.12 16 42 H 0.13 2.94 5.63 -52.48 -0.30 2.64 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -32.98 378.46 -8.09 -41.07 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.65 Total: 7.06 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -5.97 Total: -19.30 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.70 Total: -33.47 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.11 Total: -15.55 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.98 -8.09 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016066096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.815 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds