Wall clock time and date at job start Tue Mar 31 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48495 * 109.47367 * 269.99487 * 3 2 1 5 5 H 1.48503 * 109.47252 * 29.99805 * 3 2 1 6 6 H 1.48506 * 109.46988 * 149.99620 * 3 2 1 7 7 C 1.38625 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99428 * 180.02562 * 7 2 1 9 9 O 1.34809 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.35777 * 117.00407 * 174.95950 * 9 7 2 11 11 C 1.38914 * 120.00212 * 185.07434 * 10 9 7 12 12 C 1.37985 * 120.00495 * 179.72614 * 11 10 9 13 13 C 1.38950 * 119.99965 * 0.55014 * 12 11 10 14 14 N 1.39882 * 120.00738 * 179.69986 * 13 12 11 15 15 C 1.34775 * 119.99990 * 215.16291 * 14 13 12 16 16 O 1.21740 * 120.00140 * 355.49693 * 15 14 13 17 17 C 1.46442 * 120.00203 * 175.50094 * 15 14 13 18 18 C 1.37805 * 125.96170 * 179.71660 * 17 15 14 19 19 C 1.39831 * 106.77364 * 179.84737 * 18 17 15 20 20 C 1.36565 * 107.10247 * 0.40942 * 19 18 17 21 21 C 1.47661 * 125.65767 * 179.70914 * 20 19 18 22 22 C 1.39673 * 120.12378 * 359.73489 * 21 20 19 23 23 C 1.37874 * 119.86813 * 179.78880 * 22 21 20 24 24 C 1.38613 * 120.12781 * 0.49769 * 23 22 21 25 25 F 1.35099 * 119.87601 * 179.72138 * 24 23 22 26 26 C 1.38624 * 120.25554 * 359.73321 * 24 23 22 27 27 C 1.37876 * 120.12129 * 0.03204 * 26 24 23 28 28 O 1.34361 * 108.68490 * 359.74364 * 20 19 18 29 29 C 1.38955 * 119.98741 * 359.72506 * 13 12 11 30 30 C 1.37990 * 119.99520 * 0.02562 * 29 13 12 31 31 H 0.96999 * 119.99424 * 0.02562 * 1 2 3 32 32 H 1.07997 * 119.99142 * 359.97438 * 11 10 9 33 33 H 1.08006 * 120.00368 * 180.27780 * 12 11 10 34 34 H 0.96998 * 119.99722 * 35.16848 * 14 13 12 35 35 H 1.08000 * 126.61743 * 359.97438 * 18 17 15 36 36 H 1.08007 * 126.45100 * 180.12089 * 19 18 17 37 37 H 1.08001 * 120.06159 * 0.03342 * 22 21 20 38 38 H 1.08003 * 119.93243 * 180.23288 * 23 22 21 39 39 H 1.08001 * 119.93889 * 180.02562 * 26 24 23 40 40 H 1.07999 * 120.06346 * 179.97438 * 27 26 24 41 41 H 1.07996 * 120.00012 * 179.97438 * 29 13 12 42 42 H 1.08005 * 119.99493 * 179.97438 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4472 2.6527 0.7000 6 1 3.5474 1.4402 0.7002 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3349 -2.3680 0.0005 10 6 2.0703 -3.5045 -0.1052 11 6 1.4353 -4.7349 -0.2177 12 6 2.1826 -5.8893 -0.3309 13 6 3.5705 -5.8223 -0.3208 14 7 4.3282 -6.9931 -0.4292 15 6 5.4935 -7.1059 0.2385 16 8 5.9273 -6.1597 0.8699 17 6 6.2379 -8.3665 0.2045 18 6 7.4382 -8.6148 0.8343 19 6 7.7827 -9.9375 0.5392 20 6 6.7958 -10.4410 -0.2591 21 6 6.7528 -11.8078 -0.8163 22 6 7.7844 -12.7089 -0.5432 23 6 7.7367 -13.9852 -1.0627 24 6 6.6729 -14.3713 -1.8629 25 9 6.6341 -15.6214 -2.3738 26 6 5.6486 -13.4797 -2.1413 27 6 5.6833 -12.2024 -1.6234 28 8 5.8708 -9.4862 -0.4541 29 6 4.2055 -4.5920 -0.2025 30 6 3.4578 -3.4373 -0.0945 31 1 -0.4849 0.8401 -0.0004 32 1 0.3566 -4.7874 -0.2207 33 1 1.6889 -6.8455 -0.4229 34 1 4.0150 -7.7237 -0.9850 35 1 8.0029 -7.9221 1.4407 36 1 8.6657 -10.4608 0.8752 37 1 8.6158 -12.4077 0.0768 38 1 8.5320 -14.6840 -0.8491 39 1 4.8219 -13.7861 -2.7651 40 1 4.8850 -11.5084 -1.8412 41 1 5.2842 -4.5397 -0.1942 42 1 3.9515 -2.4811 -0.0021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016066096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:27 Heat of formation + Delta-G solvation = -50.277145 kcal Electronic energy + Delta-G solvation = -29714.718728 eV Core-core repulsion = 25120.276293 eV Total energy + Delta-G solvation = -4594.442435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.105 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.96362 -43.75443 -41.47569 -40.33632 -39.84572 -38.21030 -35.61136 -34.36934 -34.16234 -33.04548 -32.20401 -31.90301 -30.39863 -28.89503 -27.29731 -25.27607 -24.41910 -24.00887 -23.37681 -22.36362 -22.25739 -21.26943 -20.17351 -19.60926 -19.00295 -18.64717 -18.06630 -17.87072 -17.55577 -17.18890 -16.64202 -16.46536 -16.24044 -16.10666 -15.55289 -15.49305 -15.43001 -15.24431 -14.73704 -14.70770 -14.62291 -14.34815 -14.15465 -14.03094 -13.93620 -13.60587 -13.55002 -13.34804 -13.25667 -13.09786 -12.71605 -12.48800 -12.12937 -12.02945 -11.56832 -11.41382 -11.18604 -10.99938 -10.62048 -10.54118 -10.19656 -9.87762 -9.03528 -8.65143 -8.47526 -6.14393 -0.71339 0.18586 0.19809 0.50617 0.62623 1.33320 1.35816 1.38230 1.44728 1.52744 1.97388 2.03717 2.18052 2.60341 2.79780 3.12796 3.17404 3.28374 3.48814 3.61240 3.76636 3.85677 3.86428 4.07536 4.08948 4.18030 4.25818 4.45151 4.48579 4.51121 4.60418 4.66238 4.77762 4.88037 4.90254 5.05104 5.06590 5.07848 5.13076 5.17479 5.29362 5.35205 5.38686 5.51611 5.67056 5.73395 5.76192 6.01101 6.09236 6.35585 6.93342 6.97560 7.75199 8.74963 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.024753 B = 0.001480 C = 0.001412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.893809 B =18918.446231 C =19821.122428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.019 4.019 3 Si 1.017 2.983 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.099 0.901 9 O -0.225 6.225 10 C 0.111 3.889 11 C -0.179 4.179 12 C -0.073 4.073 13 C 0.054 3.946 14 N -0.638 5.638 15 C 0.596 3.404 16 O -0.542 6.542 17 C -0.094 4.094 18 C -0.109 4.109 19 C -0.193 4.193 20 C 0.062 3.938 21 C -0.050 4.050 22 C -0.056 4.056 23 C -0.149 4.149 24 C 0.094 3.906 25 F -0.145 7.145 26 C -0.155 4.155 27 C -0.074 4.074 28 O -0.159 6.159 29 C -0.072 4.072 30 C -0.228 4.228 31 H 0.273 0.727 32 H 0.131 0.869 33 H 0.166 0.834 34 H 0.425 0.575 35 H 0.170 0.830 36 H 0.196 0.804 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.129 0.871 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.789 -30.887 -3.043 35.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.217 4.217 3 Si 0.836 3.164 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.116 0.884 9 O -0.131 6.131 10 C 0.060 3.940 11 C -0.199 4.199 12 C -0.092 4.092 13 C -0.039 4.039 14 N -0.283 5.283 15 C 0.386 3.614 16 O -0.422 6.422 17 C -0.146 4.146 18 C -0.130 4.130 19 C -0.211 4.211 20 C 0.010 3.990 21 C -0.050 4.050 22 C -0.073 4.073 23 C -0.167 4.167 24 C 0.075 3.925 25 F -0.123 7.123 26 C -0.173 4.173 27 C -0.092 4.092 28 O -0.056 6.056 29 C -0.092 4.092 30 C -0.248 4.248 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.183 0.817 34 H 0.264 0.736 35 H 0.188 0.812 36 H 0.213 0.787 37 H 0.187 0.813 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.164 0.836 41 H 0.147 0.853 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.402 -30.148 -2.772 34.920 hybrid contribution -0.128 0.624 -0.275 0.694 sum 17.274 -29.524 -3.047 34.342 Atomic orbital electron populations 1.70183 1.07853 1.28820 1.48566 1.26529 0.96858 1.02552 0.95777 0.84616 0.77766 0.74745 0.79285 1.18718 1.19396 1.18032 1.21791 0.92475 0.81515 1.53312 0.88369 1.83938 1.35638 1.12436 1.81117 1.19954 0.91121 0.88372 0.94577 1.20311 1.00417 0.89502 1.09635 1.20764 0.90893 0.98442 0.99129 1.17355 0.90570 0.85403 1.10589 1.42944 1.20801 1.17263 1.47274 1.16787 0.80681 0.85065 0.78912 1.90899 1.68557 1.38227 1.44495 1.21914 0.99741 0.86810 1.06149 1.22410 0.93838 0.97619 0.99124 1.22105 1.02283 0.94447 1.02265 1.20996 0.89179 0.88980 0.99878 1.17936 0.97790 0.88460 1.00821 1.21246 0.97433 0.91017 0.97646 1.21332 0.98842 0.97880 0.98653 1.18199 0.97099 0.80031 0.97152 1.91511 1.96526 1.38945 1.85333 1.21278 0.99687 0.93412 1.02969 1.21332 0.97574 0.95824 0.94499 1.84013 1.44158 1.19305 1.58080 1.20946 0.99966 0.90570 0.97745 1.21104 0.93255 0.99337 1.11070 0.91771 0.85122 0.81684 0.73597 0.81200 0.78707 0.81342 0.81737 0.82838 0.83577 0.85286 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.06 13.67 21.61 0.30 -55.77 16 2 C -0.02 -1.10 5.49 84.82 0.47 -0.63 16 3 Si 1.02 43.41 29.55 68.60 2.03 45.44 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.41 -24.44 9.48 67.91 0.64 -23.79 16 8 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 9 O -0.22 -13.53 9.75 -22.82 -0.22 -13.76 16 10 C 0.11 5.54 6.65 22.60 0.15 5.69 16 11 C -0.18 -7.33 9.98 22.37 0.22 -7.11 16 12 C -0.07 -2.33 9.96 22.38 0.22 -2.11 16 13 C 0.05 1.82 6.30 38.20 0.24 2.06 16 14 N -0.64 -16.67 5.33 -307.13 -1.64 -18.31 16 15 C 0.60 16.93 7.62 86.38 0.66 17.59 16 16 O -0.54 -19.43 14.30 -4.48 -0.06 -19.50 16 17 C -0.09 -2.08 7.16 24.31 0.17 -1.90 16 18 C -0.11 -1.98 10.65 22.55 0.24 -1.74 16 19 C -0.19 -2.37 10.21 22.26 0.23 -2.15 16 20 C 0.06 0.88 7.02 24.37 0.17 1.05 16 21 C -0.05 -0.54 5.87 -20.10 -0.12 -0.66 16 22 C -0.06 -0.37 9.55 22.53 0.22 -0.15 16 23 C -0.15 -1.06 10.01 22.27 0.22 -0.83 16 24 C 0.09 1.01 7.30 22.45 0.16 1.18 16 25 F -0.14 -1.91 17.26 44.97 0.78 -1.13 16 26 C -0.15 -1.54 10.01 22.28 0.22 -1.31 16 27 C -0.07 -0.79 9.71 22.53 0.22 -0.57 16 28 O -0.16 -2.90 10.13 -9.98 -0.10 -3.00 16 29 C -0.07 -2.89 8.69 22.38 0.19 -2.70 16 30 C -0.23 -10.56 9.16 22.37 0.20 -10.36 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 33 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.43 7.99 8.58 -92.71 -0.80 7.20 16 35 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.20 0.88 7.23 -2.91 -0.02 0.86 16 37 H 0.17 0.13 6.96 -2.91 -0.02 0.11 16 38 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 39 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.15 1.33 7.90 -2.91 -0.02 1.31 16 41 H 0.13 5.08 6.22 -2.91 -0.02 5.07 16 42 H 0.12 5.71 5.63 -2.91 -0.02 5.69 16 Total: -1.00 -77.32 378.46 6.14 -71.18 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.32 Total: 23.31 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 4.74 Total: -28.46 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -1.34 Total: -74.08 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.39 Total: -36.25 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.78 Total: -1.13 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -77.32 6.14 -71.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016066096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.899 kcal (2) G-P(sol) polarization free energy of solvation -77.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds