Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28876 * 124.77757 * 2 1 4 4 C 1.32434 * 117.11173 * 180.02562 * 3 2 1 5 5 C 1.48556 * 122.93865 * 179.97438 * 4 3 2 6 6 C 1.40748 * 126.22467 * 180.28806 * 5 4 3 7 7 C 1.37745 * 107.02773 * 180.13641 * 6 5 4 8 8 C 1.46640 * 126.09190 * 179.90601 * 7 6 5 9 9 O 1.21708 * 120.00530 * 352.52188 * 8 7 6 10 10 N 1.34777 * 119.99592 * 172.51865 * 8 7 6 11 11 C 1.39090 * 119.99799 * 184.21287 * 10 8 7 12 12 C 1.39518 * 119.83467 * 144.11944 * 11 10 8 13 13 C 1.36363 * 120.16437 * 179.75962 * 12 11 10 14 14 C 1.40884 * 119.82819 * 0.53714 * 13 12 11 15 15 C 1.41128 * 120.15770 * 179.69866 * 14 13 12 16 16 H 1.08002 * 119.99873 * 214.39911 * 15 14 13 17 17 C 1.39906 * 120.00283 * 34.39886 * 15 14 13 18 18 N 1.30869 * 119.99766 * 356.70742 * 17 15 14 19 19 Si 1.86795 * 119.99969 * 176.70611 * 17 15 14 20 20 H 1.48505 * 109.46973 * 60.00235 * 19 17 15 21 21 H 1.48496 * 109.47198 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47204 * 299.99921 * 19 17 15 23 23 C 1.40889 * 119.68141 * 359.71669 * 14 13 12 24 24 C 1.36352 * 119.83072 * 0.02562 * 23 14 13 25 25 N 1.37675 * 107.80511 * 359.64494 * 7 6 5 26 26 C 1.46505 * 125.55167 * 180.24778 * 25 7 6 27 27 C 1.35518 * 108.89201 * 0.22680 * 25 7 6 28 28 C 1.34711 * 114.12570 * 0.23185 * 4 3 2 29 29 S 1.70918 * 124.77111 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46928 * 90.00223 * 1 2 3 31 31 H 1.08997 * 109.47412 * 210.00335 * 1 2 3 32 32 H 1.09002 * 109.47343 * 330.00416 * 1 2 3 33 33 H 1.07999 * 126.48118 * 0.02562 * 6 5 4 34 34 H 0.96993 * 120.00426 * 4.49154 * 10 8 7 35 35 H 1.08000 * 119.92084 * 0.02562 * 12 11 10 36 36 H 1.07997 * 120.08586 * 180.23469 * 13 12 11 37 37 H 0.96999 * 119.99918 * 180.02562 * 18 17 15 38 38 H 1.07997 * 120.08157 * 179.97438 * 23 14 13 39 39 H 1.07999 * 119.91732 * 180.02562 * 24 23 14 40 40 H 1.09004 * 109.47281 * 78.13074 * 26 25 7 41 41 H 1.08997 * 109.46675 * 198.13526 * 26 25 7 42 42 H 1.09003 * 109.46840 * 318.13147 * 26 25 7 43 43 H 1.07999 * 125.63995 * 179.97438 * 27 25 7 44 44 H 1.08002 * 126.05694 * 179.72727 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2421 1.0586 0.0000 4 6 3.5546 0.8819 -0.0005 5 6 4.5215 2.0098 -0.0012 6 6 5.9248 1.9023 -0.0074 7 6 6.4276 3.1847 -0.0025 8 6 7.8461 3.5564 -0.0043 9 8 8.7001 2.6992 0.1266 10 7 8.2042 4.8474 -0.1509 11 6 9.5492 5.1902 -0.2406 12 6 9.9451 6.2342 -1.0771 13 6 11.2614 6.5791 -1.1664 14 6 12.2236 5.8708 -0.4200 15 6 13.5885 6.2177 -0.5121 16 1 14.3463 5.4511 -0.4449 17 6 13.9600 7.5547 -0.6904 18 7 13.0413 8.4752 -0.8363 19 14 15.7673 8.0259 -0.7200 20 1 16.4464 7.3135 -1.8321 21 1 15.8935 9.4919 -0.9204 22 1 16.3989 7.6470 0.5695 23 6 11.8168 4.8142 0.4185 24 6 10.4965 4.4841 0.5017 25 7 5.3609 4.0551 -0.0015 26 6 5.4545 5.5171 -0.0018 27 6 4.2103 3.3391 -0.0007 28 6 3.9363 -0.4100 -0.0060 29 16 2.4818 -1.4040 -0.0006 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 6.4987 0.9874 -0.0131 34 1 7.5241 5.5380 -0.1898 35 1 9.2068 6.7734 -1.6521 36 1 11.5660 7.3900 -1.8115 37 1 13.2988 9.4021 -0.9603 38 1 12.5490 4.2666 0.9933 39 1 10.1830 3.6747 1.1443 40 1 5.6876 5.8661 -1.0079 41 1 4.5034 5.9421 0.3189 42 1 6.2421 5.8309 0.6832 43 1 3.2123 3.7518 0.0005 44 1 4.9538 -0.7722 -0.0115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016235029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = 89.157797 kcal Electronic energy + Delta-G solvation = -28304.727982 eV Core-core repulsion = 24314.837827 eV Total energy + Delta-G solvation = -3989.890155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62853 -39.83923 -39.16040 -37.17386 -34.81011 -33.79182 -32.90145 -31.93627 -29.90902 -29.56996 -28.69500 -28.49216 -26.73481 -25.29895 -24.02576 -22.52094 -21.38194 -21.04662 -20.43770 -19.75574 -19.45072 -18.07790 -17.32491 -16.96560 -16.42576 -15.85364 -15.67978 -15.24335 -15.18801 -15.15183 -14.45477 -14.30512 -13.92951 -13.85419 -13.70518 -13.22733 -13.20392 -13.08643 -12.69019 -12.63526 -12.50923 -12.40308 -12.26697 -12.15249 -11.76003 -11.66927 -11.41796 -11.15552 -10.99653 -10.55454 -10.18968 -9.89865 -9.87977 -9.74252 -9.61438 -9.45526 -9.22073 -8.83078 -8.55243 -7.96761 -7.59258 -6.92976 -6.66514 -4.37341 0.45844 1.14046 1.46806 1.51884 2.00468 2.55307 2.67334 3.05679 3.07375 3.09615 3.13626 3.31265 3.52591 3.71110 3.82755 3.95166 4.38999 4.62266 4.67955 4.71437 4.82622 4.95394 5.00443 5.04717 5.07161 5.13862 5.20731 5.45900 5.50951 5.61876 5.68209 5.98164 6.09691 6.13359 6.40264 6.57109 6.66358 6.74462 6.90572 6.97571 7.03295 7.15939 7.25769 7.54951 7.60009 7.68508 7.82629 8.02580 8.18016 8.27269 8.56753 8.65883 8.88892 8.95523 10.24941 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.031910 B = 0.001576 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.257683 B =17762.013018 C =18485.075246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.048 3.952 3 N -0.471 5.471 4 C 0.157 3.843 5 C -0.124 4.124 6 C -0.092 4.092 7 C -0.039 4.039 8 C 0.572 3.428 9 O -0.519 6.519 10 N -0.655 5.655 11 C -0.002 4.002 12 C -0.119 4.119 13 C -0.141 4.141 14 C 0.102 3.898 15 C -0.460 4.460 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.812 5.812 19 Si 0.916 3.084 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.205 4.205 24 C -0.082 4.082 25 N -0.428 5.428 26 C 0.052 3.948 27 C 0.059 3.941 28 C -0.258 4.258 29 S 0.111 5.889 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.151 0.849 34 H 0.391 0.609 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.278 0.722 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.175 0.825 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.314 -9.771 0.998 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.231 4.231 3 N -0.186 5.186 4 C 0.027 3.973 5 C -0.133 4.133 6 C -0.119 4.119 7 C -0.150 4.150 8 C 0.359 3.641 9 O -0.395 6.395 10 N -0.302 5.302 11 C -0.094 4.094 12 C -0.139 4.139 13 C -0.161 4.161 14 C 0.100 3.900 15 C -0.490 4.490 16 H 0.094 0.906 17 C -0.145 4.145 18 N -0.439 5.439 19 Si 0.741 3.259 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.225 4.225 24 C -0.102 4.102 25 N -0.104 5.104 26 C -0.089 4.089 27 C -0.079 4.079 28 C -0.397 4.397 29 S 0.365 5.635 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.168 0.832 34 H 0.229 0.771 35 H 0.108 0.892 36 H 0.150 0.850 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.192 0.808 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -24.117 -10.294 1.042 26.243 hybrid contribution 1.034 1.444 -0.024 1.776 sum -23.083 -8.849 1.018 24.742 Atomic orbital electron populations 1.20440 0.85204 1.04178 1.03876 1.26906 1.01665 0.91056 1.03447 1.66112 1.04379 1.31575 1.16569 1.18002 0.87834 0.91175 1.00278 1.17172 0.91202 0.90076 1.14835 1.21137 0.92225 0.95710 1.02828 1.20588 0.87400 0.89768 1.17273 1.17029 0.85769 0.83018 0.78247 1.90829 1.49789 1.49377 1.49467 1.43397 1.07910 1.07055 1.71812 1.17244 0.81563 1.03812 1.06809 1.20309 0.96729 0.98163 0.98712 1.21168 0.90924 1.02515 1.01475 1.17736 0.93770 0.90009 0.88534 1.19491 0.92681 0.93004 1.43872 0.90554 1.25881 0.99764 0.96452 0.92395 1.69751 1.34582 1.02342 1.37263 0.86237 0.82148 0.77707 0.79798 1.19003 1.20423 1.19074 1.20824 0.94264 1.03660 1.03789 1.20418 0.92980 0.98663 0.98144 1.44029 1.05749 1.06436 1.54153 1.22420 1.05391 0.76774 1.04344 1.21990 0.90250 0.90737 1.04901 1.26853 1.03005 0.95384 1.14490 1.83884 0.97856 1.12688 1.69092 0.89607 0.90120 0.89314 0.83152 0.77107 0.89244 0.85039 0.91074 0.88478 0.87397 0.89450 0.88202 0.88999 0.80750 0.80397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.46 36.01 0.38 -0.02 16 2 C 0.05 0.43 7.37 -13.52 -0.10 0.33 16 3 N -0.47 -5.44 10.41 -8.39 -0.09 -5.53 16 4 C 0.16 1.93 6.70 -84.60 -0.57 1.36 16 5 C -0.12 -1.61 6.08 -105.31 -0.64 -2.25 16 6 C -0.09 -1.33 10.20 -38.81 -0.40 -1.72 16 7 C -0.04 -0.59 6.87 -82.03 -0.56 -1.16 16 8 C 0.57 10.65 7.59 -12.87 -0.10 10.55 16 9 O -0.52 -11.51 14.32 5.18 0.07 -11.43 16 10 N -0.65 -11.78 5.16 -10.93 -0.06 -11.83 16 11 C 0.00 -0.05 6.30 -83.61 -0.53 -0.58 16 12 C -0.12 -2.69 9.90 -39.78 -0.39 -3.08 16 13 C -0.14 -3.58 8.61 -39.26 -0.34 -3.92 16 14 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 15 C -0.46 -12.19 9.03 -37.86 -0.34 -12.53 16 16 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 17 C 0.07 1.75 5.41 -17.34 -0.09 1.66 16 18 N -0.81 -20.68 10.60 55.55 0.59 -20.09 16 19 Si 0.92 18.79 29.56 -169.99 -5.02 13.76 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.21 -5.19 9.74 -39.26 -0.38 -5.58 16 24 C -0.08 -1.98 8.60 -39.78 -0.34 -2.32 16 25 N -0.43 -5.02 3.16 -119.97 -0.38 -5.40 16 26 C 0.05 0.42 9.40 59.85 0.56 0.98 16 27 C 0.06 0.67 11.20 -16.54 -0.19 0.48 16 28 C -0.26 -2.75 10.87 29.48 0.32 -2.43 16 29 S 0.11 0.92 23.16 -107.50 -2.49 -1.57 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.15 2.06 7.85 -52.49 -0.41 1.65 16 34 H 0.39 5.53 4.47 -40.82 -0.18 5.35 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.13 3.44 6.14 -52.49 -0.32 3.12 16 37 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 38 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.11 2.57 6.24 -52.49 -0.33 2.25 16 40 H 0.09 0.62 7.94 -51.93 -0.41 0.21 16 41 H 0.10 0.50 8.09 -51.93 -0.42 0.07 16 42 H 0.09 0.78 6.37 -51.93 -0.33 0.45 16 43 H 0.18 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.18 1.66 7.80 -52.49 -0.41 1.25 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -32.58 387.23 -10.74 -43.32 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.90 Total: 11.03 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -4.30 Total: -18.09 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.07 Total: -42.85 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.07 Total: -11.43 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.76 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.49 Total: -1.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.58 -10.74 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016235029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.477 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds