Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28876 * 124.77757 * 2 1 4 4 C 1.32434 * 117.11173 * 180.02562 * 3 2 1 5 5 C 1.48556 * 122.93865 * 179.97438 * 4 3 2 6 6 C 1.40748 * 126.22467 * 180.28806 * 5 4 3 7 7 C 1.37745 * 107.02773 * 180.13641 * 6 5 4 8 8 C 1.46640 * 126.09190 * 179.90601 * 7 6 5 9 9 O 1.21708 * 120.00530 * 352.52188 * 8 7 6 10 10 N 1.34777 * 119.99592 * 172.51865 * 8 7 6 11 11 C 1.39090 * 119.99799 * 184.21287 * 10 8 7 12 12 C 1.39518 * 119.83467 * 144.11944 * 11 10 8 13 13 C 1.36363 * 120.16437 * 179.75962 * 12 11 10 14 14 C 1.40884 * 119.82819 * 0.53714 * 13 12 11 15 15 C 1.41128 * 120.15770 * 179.69866 * 14 13 12 16 16 H 1.08002 * 119.99873 * 214.39911 * 15 14 13 17 17 C 1.39906 * 120.00283 * 34.39886 * 15 14 13 18 18 N 1.30869 * 119.99766 * 356.70742 * 17 15 14 19 19 Si 1.86795 * 119.99969 * 176.70611 * 17 15 14 20 20 H 1.48505 * 109.46973 * 60.00235 * 19 17 15 21 21 H 1.48496 * 109.47198 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47204 * 299.99921 * 19 17 15 23 23 C 1.40889 * 119.68141 * 359.71669 * 14 13 12 24 24 C 1.36352 * 119.83072 * 0.02562 * 23 14 13 25 25 N 1.37675 * 107.80511 * 359.64494 * 7 6 5 26 26 C 1.46505 * 125.55167 * 180.24778 * 25 7 6 27 27 C 1.35518 * 108.89201 * 0.22680 * 25 7 6 28 28 C 1.34711 * 114.12570 * 0.23185 * 4 3 2 29 29 S 1.70918 * 124.77111 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46928 * 90.00223 * 1 2 3 31 31 H 1.08997 * 109.47412 * 210.00335 * 1 2 3 32 32 H 1.09002 * 109.47343 * 330.00416 * 1 2 3 33 33 H 1.07999 * 126.48118 * 0.02562 * 6 5 4 34 34 H 0.96993 * 120.00426 * 4.49154 * 10 8 7 35 35 H 1.08000 * 119.92084 * 0.02562 * 12 11 10 36 36 H 1.07997 * 120.08586 * 180.23469 * 13 12 11 37 37 H 0.96999 * 119.99918 * 180.02562 * 18 17 15 38 38 H 1.07997 * 120.08157 * 179.97438 * 23 14 13 39 39 H 1.07999 * 119.91732 * 180.02562 * 24 23 14 40 40 H 1.09004 * 109.47281 * 78.13074 * 26 25 7 41 41 H 1.08997 * 109.46675 * 198.13526 * 26 25 7 42 42 H 1.09003 * 109.46840 * 318.13147 * 26 25 7 43 43 H 1.07999 * 125.63995 * 179.97438 * 27 25 7 44 44 H 1.08002 * 126.05694 * 179.72727 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2421 1.0586 0.0000 4 6 3.5546 0.8819 -0.0005 5 6 4.5215 2.0098 -0.0012 6 6 5.9248 1.9023 -0.0074 7 6 6.4276 3.1847 -0.0025 8 6 7.8461 3.5564 -0.0043 9 8 8.7001 2.6992 0.1266 10 7 8.2042 4.8474 -0.1509 11 6 9.5492 5.1902 -0.2406 12 6 9.9451 6.2342 -1.0771 13 6 11.2614 6.5791 -1.1664 14 6 12.2236 5.8708 -0.4200 15 6 13.5885 6.2177 -0.5121 16 1 14.3463 5.4511 -0.4449 17 6 13.9600 7.5547 -0.6904 18 7 13.0413 8.4752 -0.8363 19 14 15.7673 8.0259 -0.7200 20 1 16.4464 7.3135 -1.8321 21 1 15.8935 9.4919 -0.9204 22 1 16.3989 7.6470 0.5695 23 6 11.8168 4.8142 0.4185 24 6 10.4965 4.4841 0.5017 25 7 5.3609 4.0551 -0.0015 26 6 5.4545 5.5171 -0.0018 27 6 4.2103 3.3391 -0.0007 28 6 3.9363 -0.4100 -0.0060 29 16 2.4818 -1.4040 -0.0006 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 6.4987 0.9874 -0.0131 34 1 7.5241 5.5380 -0.1898 35 1 9.2068 6.7734 -1.6521 36 1 11.5660 7.3900 -1.8115 37 1 13.2988 9.4021 -0.9603 38 1 12.5490 4.2666 0.9933 39 1 10.1830 3.6747 1.1443 40 1 5.6876 5.8661 -1.0079 41 1 4.5034 5.9421 0.3189 42 1 6.2421 5.8309 0.6832 43 1 3.2123 3.7518 0.0005 44 1 4.9538 -0.7722 -0.0115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016235029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = 71.114006 kcal Electronic energy + Delta-G solvation = -28305.510420 eV Core-core repulsion = 24314.837827 eV Total energy + Delta-G solvation = -3990.672593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.67160 -40.98566 -40.33992 -38.95932 -36.40010 -35.09558 -34.29940 -32.66818 -31.56636 -31.28329 -30.05029 -29.27169 -27.53921 -26.99461 -25.03800 -23.86112 -23.13933 -22.25675 -21.73613 -20.99987 -20.32740 -19.35801 -19.08443 -18.10684 -17.71633 -17.06736 -16.97062 -16.79810 -15.98444 -15.95699 -15.78397 -15.58343 -15.49462 -14.86472 -14.76762 -14.60217 -14.38896 -14.07306 -13.99827 -13.75764 -13.64751 -13.47249 -13.38001 -13.14727 -13.07761 -12.89833 -12.82716 -12.70572 -12.42462 -12.38645 -11.94923 -11.66937 -11.19575 -11.04411 -10.62528 -10.60510 -10.53774 -10.33130 -9.60727 -9.51316 -8.89996 -8.73944 -8.53481 -6.34765 -0.27554 0.25944 0.46109 0.79136 0.88261 1.10917 1.14632 1.39986 1.49734 1.52036 1.67050 2.10334 2.22536 2.23952 2.50949 2.78428 3.10191 3.56771 3.66813 3.72528 3.98254 4.11226 4.20660 4.25050 4.33811 4.40411 4.45776 4.49841 4.55240 4.68924 4.74161 4.74657 4.88213 4.97067 5.06998 5.11256 5.11711 5.28960 5.30810 5.37313 5.56512 5.65988 5.72435 5.86562 5.98141 6.08719 6.11010 6.34827 6.56884 6.64355 6.79650 6.93890 6.95090 7.19960 8.39944 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.031910 B = 0.001576 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.257683 B =17762.013018 C =18485.075246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 N -0.495 5.495 4 C 0.138 3.862 5 C -0.140 4.140 6 C -0.096 4.096 7 C -0.068 4.068 8 C 0.574 3.426 9 O -0.563 6.563 10 N -0.646 5.646 11 C 0.012 3.988 12 C -0.115 4.115 13 C -0.157 4.157 14 C 0.071 3.929 15 C -0.498 4.498 16 H 0.071 0.929 17 C 0.031 3.969 18 N -0.836 5.836 19 Si 0.988 3.012 20 H -0.261 1.261 21 H -0.266 1.266 22 H -0.265 1.265 23 C -0.221 4.221 24 C -0.094 4.094 25 N -0.420 5.420 26 C 0.039 3.961 27 C 0.082 3.918 28 C -0.281 4.281 29 S 0.153 5.847 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.144 0.856 34 H 0.411 0.589 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.286 0.714 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.139 0.861 42 H 0.086 0.914 43 H 0.206 0.794 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.359 -9.192 0.710 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.233 4.233 3 N -0.211 5.211 4 C 0.007 3.993 5 C -0.149 4.149 6 C -0.123 4.123 7 C -0.180 4.180 8 C 0.364 3.636 9 O -0.442 6.442 10 N -0.295 5.295 11 C -0.081 4.081 12 C -0.135 4.135 13 C -0.177 4.177 14 C 0.068 3.932 15 C -0.529 4.529 16 H 0.090 0.910 17 C -0.181 4.181 18 N -0.464 5.464 19 Si 0.809 3.191 20 H -0.186 1.186 21 H -0.190 1.190 22 H -0.189 1.189 23 C -0.241 4.241 24 C -0.114 4.114 25 N -0.094 5.094 26 C -0.101 4.101 27 C -0.057 4.057 28 C -0.420 4.420 29 S 0.408 5.592 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.162 0.838 34 H 0.253 0.747 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.157 0.843 42 H 0.104 0.896 43 H 0.223 0.777 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -27.214 -9.694 0.752 28.899 hybrid contribution 1.694 1.120 0.081 2.032 sum -25.520 -8.574 0.833 26.935 Atomic orbital electron populations 1.20643 0.82514 1.05446 1.05169 1.27616 1.03258 0.90866 1.01584 1.66128 1.04029 1.32762 1.18211 1.18060 0.88379 0.91355 1.01461 1.17358 0.90626 0.91435 1.15450 1.21246 0.93298 0.95470 1.02313 1.20009 0.86377 0.90828 1.20744 1.17448 0.86972 0.82430 0.76729 1.90799 1.51516 1.50520 1.51404 1.43305 1.06665 1.07819 1.71709 1.17302 0.83253 1.02545 1.05032 1.20561 0.96471 0.98029 0.98402 1.21157 0.92079 1.02667 1.01822 1.18051 0.94613 0.90969 0.89533 1.19707 0.92786 0.94117 1.46246 0.91048 1.26704 1.04338 0.95717 0.91388 1.69799 1.36528 1.02864 1.37200 0.85163 0.76324 0.77908 0.79729 1.18552 1.18982 1.18929 1.20935 0.95014 1.03928 1.04220 1.20522 0.93078 0.99042 0.98804 1.44192 1.04698 1.07610 1.52877 1.22787 1.07519 0.74536 1.05222 1.22467 0.91029 0.90192 1.02012 1.27071 1.04406 0.95929 1.14590 1.83701 0.95964 1.11427 1.68088 0.88146 0.87970 0.88920 0.83841 0.74658 0.85638 0.86097 0.90288 0.88531 0.87647 0.88104 0.84285 0.89595 0.77686 0.80269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.46 71.24 0.75 0.18 16 2 C 0.05 0.71 7.37 88.54 0.65 1.36 16 3 N -0.50 -10.57 10.41 -180.46 -1.88 -12.45 16 4 C 0.14 3.26 6.70 41.00 0.27 3.53 16 5 C -0.14 -3.52 6.08 -20.31 -0.12 -3.64 16 6 C -0.10 -2.79 10.20 22.77 0.23 -2.56 16 7 C -0.07 -2.05 6.87 40.30 0.28 -1.77 16 8 C 0.57 21.57 7.59 86.44 0.66 22.22 16 9 O -0.56 -25.91 14.32 -4.37 -0.06 -25.98 16 10 N -0.65 -22.81 5.16 -306.71 -1.58 -24.39 16 11 C 0.01 0.53 6.30 38.61 0.24 0.77 16 12 C -0.11 -5.14 9.90 22.14 0.22 -4.92 16 13 C -0.16 -8.18 8.61 22.48 0.19 -7.98 16 14 C 0.07 3.93 5.55 -21.27 -0.12 3.81 16 15 C -0.50 -27.45 9.03 23.38 0.21 -27.24 16 16 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 17 C 0.03 1.58 5.41 85.24 0.46 2.04 16 18 N -0.84 -43.14 10.60 21.82 0.23 -42.91 16 19 Si 0.99 38.75 29.56 68.60 2.03 40.78 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 C -0.22 -11.71 9.74 22.48 0.22 -11.49 16 24 C -0.09 -4.70 8.60 22.14 0.19 -4.50 16 25 N -0.42 -8.92 3.16 -533.47 -1.69 -10.60 16 26 C 0.04 0.50 9.40 127.77 1.20 1.70 16 27 C 0.08 1.66 11.20 83.72 0.94 2.60 16 28 C -0.28 -5.85 10.87 67.01 0.73 -5.12 16 29 S 0.15 2.27 23.16 -56.49 -1.31 0.96 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.14 4.19 7.85 -2.91 -0.02 4.16 16 34 H 0.41 10.91 4.47 -92.71 -0.41 10.49 16 35 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 36 H 0.12 6.49 6.14 -2.91 -0.02 6.48 16 37 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 38 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 39 H 0.11 5.25 6.24 -2.91 -0.02 5.23 16 40 H 0.10 1.08 7.94 -2.39 -0.02 1.06 16 41 H 0.14 0.73 8.09 -2.39 -0.02 0.71 16 42 H 0.09 1.25 6.37 -2.39 -0.02 1.23 16 43 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 44 H 0.18 3.46 7.80 -2.91 -0.02 3.43 16 Total: -1.00 -74.12 387.23 3.59 -70.52 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.65 Total: 35.07 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 7.20 Total: -31.01 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -4.92 Total: -90.35 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.06 Total: -25.98 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.31 Total: 0.96 kcal Total: -74.12 3.59 -70.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016235029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.636 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds