Wall clock time and date at job start Tue Mar 31 2020 06:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45197 * 109.46962 * 2 1 4 4 C 1.34761 * 116.99581 * 180.02562 * 3 2 1 5 5 O 1.21513 * 120.00080 * 0.02562 * 4 3 2 6 6 C 1.47382 * 119.99540 * 180.02562 * 4 3 2 7 7 C 1.39746 * 120.20798 * 0.27231 * 6 4 3 8 8 C 1.37786 * 119.91550 * 180.32043 * 7 6 4 9 9 C 1.38574 * 120.33519 * 359.67771 * 8 7 6 10 10 C 1.38021 * 120.42315 * 0.02562 * 9 8 7 11 11 C 1.38851 * 120.07172 * 0.03660 * 10 9 8 12 12 N 1.39255 * 120.16961 * 179.97438 * 11 10 9 13 13 C 1.46501 * 119.99769 * 90.00344 * 12 11 10 14 14 C 1.50705 * 109.47051 * 264.62684 * 13 12 11 15 15 C 1.37646 * 120.12655 * 260.30510 * 14 13 12 16 16 C 1.38613 * 120.24661 * 180.31498 * 15 14 13 17 17 C 1.38658 * 120.50114 * 359.68010 * 16 15 14 18 18 C 1.37600 * 120.24995 * 359.97438 * 17 16 15 19 19 C 1.40694 * 120.13092 * 79.99943 * 14 13 12 20 20 C 1.41400 * 120.24199 * 359.97438 * 19 14 13 21 21 H 1.07998 * 119.99912 * 22.74525 * 20 19 14 22 22 C 1.39945 * 120.00275 * 202.74040 * 20 19 14 23 23 N 1.30821 * 119.99539 * 29.91233 * 22 20 19 24 24 Si 1.86802 * 120.00120 * 209.91834 * 22 20 19 25 25 H 1.48500 * 109.46924 * 180.02562 * 24 22 20 26 26 H 1.48498 * 109.46603 * 299.99901 * 24 22 20 27 27 H 1.48493 * 109.47063 * 59.99618 * 24 22 20 28 28 C 1.34770 * 120.00069 * 270.00418 * 12 11 10 29 29 C 1.50696 * 120.00037 * 5.62424 * 28 12 11 30 30 O 1.21280 * 119.99819 * 185.62979 * 28 12 11 31 31 H 1.08997 * 109.47514 * 59.99743 * 1 2 3 32 32 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46761 * 299.99279 * 1 2 3 34 34 H 1.09003 * 109.46761 * 240.00721 * 2 1 3 35 35 H 1.08999 * 109.47246 * 120.00988 * 2 1 3 36 36 H 1.08001 * 120.04354 * 0.02725 * 7 6 4 37 37 H 1.07997 * 119.82788 * 179.70439 * 8 7 6 38 38 H 1.08003 * 119.79161 * 180.02562 * 9 8 7 39 39 H 1.07996 * 119.96939 * 180.02562 * 10 9 8 40 40 H 1.08998 * 109.47191 * 144.63125 * 13 12 11 41 41 H 1.09002 * 109.47213 * 24.62308 * 13 12 11 42 42 H 1.07997 * 119.87350 * 0.02562 * 15 14 13 43 43 H 1.07998 * 119.74631 * 179.69096 * 16 15 14 44 44 H 1.07998 * 119.87402 * 180.02562 * 17 16 15 45 45 H 1.07995 * 120.12678 * 180.02562 * 18 17 16 46 46 H 0.96999 * 120.00324 * 357.68853 * 23 22 20 47 47 H 1.08992 * 109.47637 * 5.09205 * 29 28 12 48 48 H 1.08999 * 109.47039 * 125.09227 * 29 28 12 49 49 H 1.08998 * 109.47438 * 245.08849 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0901 0.5818 -0.0015 6 6 3.9132 2.9074 0.0000 7 6 3.0660 4.0187 0.0068 8 6 3.5990 5.2892 0.0006 9 6 4.9726 5.4719 -0.0057 10 6 5.8224 4.3843 -0.0063 11 6 5.3038 3.0962 -0.0014 12 7 6.1592 1.9974 -0.0025 13 6 6.6143 1.4221 1.2656 14 6 7.9571 2.0028 1.6275 15 6 9.1080 1.2910 1.3760 16 6 10.3440 1.8199 1.7137 17 6 10.4367 3.0722 2.3016 18 6 9.2998 3.8045 2.5558 19 6 8.0396 3.2772 2.2178 20 6 6.8644 4.0206 2.4745 21 1 5.9157 3.5140 2.5729 22 6 6.9307 5.4127 2.6012 23 7 7.8442 6.0859 1.9502 24 14 5.7149 6.3096 3.6998 25 1 5.9950 7.7674 3.6613 26 1 4.3332 6.0586 3.2171 27 1 5.8496 5.8156 5.0937 28 6 6.5684 1.4632 -1.1702 29 6 6.2046 2.1293 -2.4721 30 8 7.2294 0.4464 -1.1732 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5140 0.8899 36 1 1.9947 3.8818 0.0121 37 1 2.9429 6.1471 0.0010 38 1 5.3810 6.4718 -0.0101 39 1 6.8917 4.5351 -0.0107 40 1 6.7019 0.3405 1.1633 41 1 5.8942 1.6558 2.0498 42 1 9.0475 0.3148 0.9180 43 1 11.2415 1.2523 1.5173 44 1 11.4049 3.4747 2.5603 45 1 9.3744 4.7799 3.0134 46 1 8.4965 5.6174 1.4063 47 1 5.6917 3.0692 -2.2685 48 1 7.1107 2.3265 -3.0449 49 1 5.5483 1.4739 -3.0446 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016778417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:21 Heat of formation + Delta-G solvation = -66.132011 kcal Electronic energy + Delta-G solvation = -35314.316958 eV Core-core repulsion = 30978.480404 eV Total energy + Delta-G solvation = -4335.836554 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.75543 -39.56922 -38.06661 -37.69148 -36.36278 -34.80154 -34.03009 -32.05266 -31.38126 -30.75918 -29.46228 -29.31506 -28.82056 -25.53681 -24.69064 -24.43573 -22.85597 -22.43521 -21.08186 -20.78312 -20.20510 -18.96438 -17.91720 -17.61212 -16.88322 -16.52084 -16.38809 -15.88802 -15.50187 -14.81419 -14.74139 -14.36033 -14.24334 -14.14450 -14.01986 -13.99371 -13.70139 -13.23642 -13.05149 -12.87052 -12.54235 -12.32595 -12.23163 -12.12862 -11.93468 -11.89166 -11.76803 -11.65840 -11.59309 -11.31925 -11.09001 -10.96666 -10.83754 -10.62675 -10.51791 -10.49053 -10.27447 -9.75948 -9.55232 -9.45520 -8.96729 -8.65312 -8.37491 -8.12522 -7.59980 -7.58238 -7.28262 -4.46844 0.92480 1.62071 2.66456 2.72300 2.79696 2.82769 3.07802 3.20589 3.22249 3.27403 3.71636 3.88663 4.03256 4.51425 4.74847 4.81174 4.90255 5.00530 5.11597 5.15843 5.34113 5.43911 5.46831 5.48459 5.62460 5.65587 5.69864 5.76345 5.79047 5.87826 5.98904 6.10146 6.12133 6.24125 6.27649 6.37005 6.45412 6.46329 6.57607 6.64346 6.77884 6.82652 6.99954 7.02896 7.16467 7.25537 7.36870 7.63306 7.75754 7.81313 7.94279 7.96352 8.07901 8.16029 8.31084 8.71170 8.77543 8.82763 9.92561 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.008963 B = 0.005000 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.343999 B = 5598.833419 C = 7312.301922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.359 6.359 4 C 0.504 3.496 5 O -0.488 6.488 6 C -0.141 4.141 7 C -0.075 4.075 8 C -0.131 4.131 9 C -0.083 4.083 10 C -0.060 4.060 11 C 0.206 3.794 12 N -0.548 5.548 13 C 0.199 3.801 14 C -0.228 4.228 15 C -0.051 4.051 16 C -0.259 4.259 17 C -0.079 4.079 18 C -0.228 4.228 19 C 0.114 3.886 20 C -0.514 4.514 21 H 0.075 0.925 22 C 0.052 3.948 23 N -0.789 5.789 24 Si 1.042 2.958 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.275 1.275 28 C 0.529 3.471 29 C -0.175 4.175 30 O -0.542 6.542 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.299 0.701 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.287 -0.153 -5.097 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.277 6.277 4 C 0.349 3.651 5 O -0.375 6.375 6 C -0.144 4.144 7 C -0.094 4.094 8 C -0.149 4.149 9 C -0.101 4.101 10 C -0.080 4.080 11 C 0.115 3.885 12 N -0.276 5.276 13 C 0.080 3.920 14 C -0.230 4.230 15 C -0.070 4.070 16 C -0.278 4.278 17 C -0.098 4.098 18 C -0.247 4.247 19 C 0.110 3.890 20 C -0.541 4.541 21 H 0.093 0.907 22 C -0.171 4.171 23 N -0.412 5.412 24 Si 0.866 3.134 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.200 1.200 28 C 0.318 3.682 29 C -0.235 4.235 30 O -0.419 6.419 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.121 0.879 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.109 0.891 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.156 0.472 -4.624 13.953 hybrid contribution 0.618 -1.568 -0.225 1.700 sum -12.538 -1.095 -4.848 13.488 Atomic orbital electron populations 1.21791 0.92784 1.02778 1.03419 1.22955 0.95071 0.80448 1.02579 1.86541 1.24326 1.31957 1.84833 1.21145 0.80342 0.90112 0.73508 1.90919 1.59870 1.42189 1.44515 1.19380 0.93133 0.90232 1.11608 1.21151 0.99407 0.91335 0.97532 1.21092 0.95396 0.96752 1.01673 1.21311 0.93008 0.99434 0.96383 1.21458 1.01476 0.90326 0.94698 1.17399 0.86688 0.87935 0.96526 1.45289 1.45904 1.29243 1.07161 1.19862 0.93282 0.96339 0.82540 1.19820 0.93355 0.99074 1.10751 1.20564 0.92440 0.97680 0.96270 1.20342 0.95986 0.98215 1.13260 1.20633 0.96733 0.94489 0.97942 1.21092 0.92596 1.01547 1.09482 1.17443 0.92643 0.90961 0.87910 1.20460 0.95399 0.93941 1.44330 0.90682 1.26712 0.99725 0.95474 0.95228 1.70531 1.12331 1.41343 1.17004 0.83943 0.75880 0.76613 0.76959 1.19740 1.19425 1.20027 1.20403 0.78785 0.84069 0.84926 1.21924 1.03842 1.01792 0.95943 1.90631 1.39794 1.24277 1.87193 0.91569 0.90415 0.91488 0.91415 0.91311 0.84948 0.85576 0.85187 0.84271 0.91107 0.91414 0.88811 0.89506 0.89502 0.87853 0.88640 0.90741 0.89074 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.72 6.20 37.16 0.23 0.95 16 3 O -0.36 -5.02 9.47 -40.66 -0.39 -5.41 16 4 C 0.50 8.47 7.89 34.45 0.27 8.74 16 5 O -0.49 -9.50 13.52 -19.28 -0.26 -9.76 16 6 C -0.14 -2.32 5.89 -104.83 -0.62 -2.94 16 7 C -0.08 -1.03 9.61 -39.18 -0.38 -1.41 16 8 C -0.13 -1.73 10.02 -39.62 -0.40 -2.13 16 9 C -0.08 -1.27 9.61 -39.54 -0.38 -1.65 16 10 C -0.06 -1.08 5.96 -39.43 -0.24 -1.32 16 11 C 0.21 3.78 2.34 -83.47 -0.20 3.58 16 12 N -0.55 -11.15 1.11 -114.51 -0.13 -11.28 16 13 C 0.20 4.43 4.31 -5.19 -0.02 4.41 16 14 C -0.23 -5.41 5.48 -103.91 -0.57 -5.98 16 15 C -0.05 -1.20 9.65 -39.66 -0.38 -1.59 16 16 C -0.26 -5.96 10.05 -39.29 -0.39 -6.35 16 17 C -0.08 -1.83 10.02 -39.66 -0.40 -2.22 16 18 C -0.23 -5.53 7.95 -38.87 -0.31 -5.84 16 19 C 0.11 2.75 5.15 -106.82 -0.55 2.20 16 20 C -0.51 -11.81 4.84 -37.74 -0.18 -11.99 16 21 H 0.08 1.77 5.93 -52.49 -0.31 1.46 16 22 C 0.05 1.14 3.40 -17.34 -0.06 1.08 16 23 N -0.79 -17.94 12.26 55.55 0.68 -17.26 16 24 Si 1.04 19.69 30.02 -169.99 -5.10 14.59 16 25 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 26 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 27 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 28 C 0.53 10.88 6.76 -10.99 -0.07 10.81 16 29 C -0.18 -2.78 10.07 36.00 0.36 -2.42 16 30 O -0.54 -12.87 16.74 5.56 0.09 -12.78 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.13 1.51 7.61 -52.49 -0.40 1.11 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.14 2.88 6.96 -52.49 -0.37 2.52 16 40 H 0.07 1.64 7.38 -51.93 -0.38 1.26 16 41 H 0.07 1.52 6.59 -51.93 -0.34 1.18 16 42 H 0.09 2.20 8.03 -52.49 -0.42 1.78 16 43 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.10 2.56 6.45 -52.49 -0.34 2.22 16 46 H 0.30 7.15 6.52 -40.82 -0.27 6.88 16 47 H 0.07 1.10 6.08 -51.93 -0.32 0.78 16 48 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -28.17 400.71 -9.55 -37.72 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -6.59 Total: 13.02 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -3.90 Total: -14.88 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: 0.55 Total: -28.54 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.55 Total: -27.95 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.10 Total: 14.59 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.17 -9.55 -37.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016778417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.410 kcal (2) G-P(sol) polarization free energy of solvation -28.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds