Wall clock time and date at job start Tue Mar 31 2020 05:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48501 * 109.46901 * 269.99575 * 3 2 1 5 5 H 1.48498 * 109.47179 * 29.99363 * 3 2 1 6 6 H 1.48499 * 109.47074 * 149.99627 * 3 2 1 7 7 C 1.38638 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99548 * 180.02562 * 7 2 1 9 9 O 1.34805 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.35784 * 116.99909 * 185.42715 * 9 7 2 11 11 C 1.38905 * 119.99351 * 5.86934 * 10 9 7 12 12 C 1.37997 * 120.00320 * 180.02562 * 11 10 9 13 13 C 1.38939 * 119.99769 * 359.97438 * 12 11 10 14 14 N 1.39909 * 120.00805 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99835 * 33.46414 * 14 13 12 16 16 O 1.21597 * 119.99986 * 5.18934 * 15 14 13 17 17 C 1.47569 * 120.00157 * 185.18848 * 15 14 13 18 18 C 1.39763 * 120.07825 * 179.97438 * 17 15 14 19 19 C 1.37666 * 119.92497 * 180.02562 * 18 17 15 20 20 C 1.39131 * 120.07548 * 0.02562 * 19 18 17 21 21 N 1.39444 * 119.92533 * 179.97438 * 20 19 18 22 22 C 1.34773 * 120.00328 * 146.47911 * 21 20 19 23 23 O 1.21280 * 119.99662 * 354.75608 * 22 21 20 24 24 C 1.50691 * 120.00439 * 174.75477 * 22 21 20 25 25 C 1.53003 * 117.50155 * 248.74809 * 24 22 21 26 26 C 1.53005 * 117.50402 * 180.08884 * 24 22 21 27 27 C 1.39136 * 120.14943 * 0.27764 * 20 19 18 28 28 C 1.37660 * 120.07768 * 359.44480 * 27 20 19 29 29 C 1.38941 * 119.99025 * 0.27701 * 13 12 11 30 30 C 1.37998 * 119.99648 * 359.47194 * 29 13 12 31 31 H 0.96999 * 119.99748 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.00198 * 0.02562 * 11 10 9 33 33 H 1.08002 * 120.00710 * 179.97438 * 12 11 10 34 34 H 0.97005 * 120.00414 * 213.46376 * 14 13 12 35 35 H 1.07994 * 120.03451 * 0.02562 * 18 17 15 36 36 H 1.07996 * 119.96017 * 179.97438 * 19 18 17 37 37 H 0.97008 * 119.99677 * 326.20180 * 21 20 19 38 38 H 1.09007 * 115.55119 * 34.41351 * 24 22 21 39 39 H 1.09000 * 117.49804 * 359.97438 * 25 24 22 40 40 H 1.09000 * 117.50181 * 145.02111 * 25 24 22 41 41 H 1.09000 * 117.49989 * 214.98185 * 26 24 22 42 42 H 1.09000 * 117.49286 * 359.97377 * 26 24 22 43 43 H 1.08007 * 119.95922 * 179.70212 * 27 20 19 44 44 H 1.08004 * 120.04158 * 180.27509 * 28 27 20 45 45 H 1.07998 * 120.00326 * 179.70041 * 29 13 12 46 46 H 1.07999 * 120.00061 * 180.25350 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0695 -3.5042 0.1155 11 6 3.4367 -3.4263 0.3484 12 6 4.1837 -4.5808 0.4647 13 6 3.5681 -5.8210 0.3495 14 7 4.3252 -6.9916 0.4679 15 6 5.3845 -7.0277 1.3004 16 8 5.6264 -6.0764 2.0181 17 6 6.2508 -8.2217 1.3409 18 6 7.3500 -8.2606 2.2032 19 6 8.1564 -9.3758 2.2381 20 6 7.8785 -10.4631 1.4158 21 7 8.6976 -11.5910 1.4533 22 6 8.1691 -12.8147 1.2544 23 8 6.9690 -12.9452 1.1377 24 6 9.0692 -14.0208 1.1771 25 6 9.2032 -14.7166 -0.1789 26 6 8.4088 -15.3818 0.9478 27 6 6.7886 -10.4253 0.5516 28 6 5.9748 -9.3156 0.5158 29 6 2.2015 -5.8986 0.1113 30 6 1.4539 -4.7440 0.0002 31 1 -0.4850 0.8401 -0.0004 32 1 3.9151 -2.4623 0.4384 33 1 5.2468 -4.5204 0.6454 34 1 4.0877 -7.7773 -0.0491 35 1 7.5665 -7.4167 2.8414 36 1 9.0062 -9.4063 2.9038 37 1 9.6486 -11.4944 1.6185 38 1 9.9514 -13.9909 1.8167 39 1 8.6400 -14.3022 -1.0151 40 1 10.1733 -15.1448 -0.4313 41 1 8.8566 -16.2472 1.4363 42 1 7.3231 -15.4047 0.8533 43 1 6.5785 -11.2692 -0.0888 44 1 5.1264 -9.2886 -0.1520 45 1 1.7236 -6.8625 0.0168 46 1 0.3909 -4.8043 -0.1809 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018828890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:21 Heat of formation + Delta-G solvation = -5.704043 kcal Electronic energy + Delta-G solvation = -30055.857418 eV Core-core repulsion = 25684.526785 eV Total energy + Delta-G solvation = -4371.330633 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.23338 -40.31007 -39.05562 -38.35704 -36.78863 -36.40260 -35.22806 -34.02265 -32.18867 -31.32837 -30.53363 -30.16741 -27.87958 -25.83136 -25.19044 -23.43790 -23.28912 -23.01650 -22.26386 -21.44827 -20.55726 -20.09234 -18.61009 -18.20928 -17.97219 -17.67033 -17.03117 -16.48001 -16.00752 -15.42642 -15.27706 -15.05812 -15.00581 -14.61543 -14.48405 -14.21990 -14.01980 -13.77397 -13.57656 -13.55087 -13.18441 -13.02816 -12.87790 -12.84578 -12.47026 -12.17398 -11.76576 -11.64192 -11.53770 -11.48348 -11.28208 -11.19801 -10.99264 -10.83633 -10.75696 -10.42037 -10.39373 -9.83347 -9.58694 -9.34562 -9.24723 -8.68457 -8.55917 -8.18712 -6.89816 -6.42481 -3.99750 0.46446 1.06083 1.81813 2.16058 2.24576 2.38617 2.89739 3.15871 3.16957 3.21026 3.21827 3.28823 3.68969 3.95030 3.99943 4.12175 4.22750 4.41427 4.47763 4.57477 4.60793 4.69952 4.95020 4.98548 5.04589 5.07441 5.13195 5.15868 5.27172 5.31577 5.51261 5.61461 5.69665 5.73944 5.80369 5.84672 6.01846 6.05280 6.16408 6.20426 6.36066 6.54194 6.74826 6.77428 6.87887 7.02478 7.11868 7.31014 7.45647 7.51808 7.70123 7.79878 8.02570 8.36572 9.03356 9.73003 10.75497 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.001419 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.829045 B =19733.098631 C =20379.996712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.146 3.854 11 C -0.218 4.218 12 C -0.063 4.063 13 C 0.036 3.964 14 N -0.655 5.655 15 C 0.550 3.450 16 O -0.523 6.523 17 C -0.143 4.143 18 C -0.038 4.038 19 C -0.153 4.153 20 C 0.167 3.833 21 N -0.669 5.669 22 C 0.542 3.458 23 O -0.514 6.514 24 C -0.198 4.198 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.129 4.129 28 C -0.066 4.066 29 C -0.093 4.093 30 C -0.177 4.177 31 H 0.270 0.730 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.401 0.599 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.414 0.586 38 H 0.127 0.873 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.115 0.885 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.416 -28.872 0.548 35.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.092 3.908 11 C -0.238 4.238 12 C -0.083 4.083 13 C -0.057 4.057 14 N -0.299 5.299 15 C 0.338 3.662 16 O -0.401 6.401 17 C -0.147 4.147 18 C -0.058 4.058 19 C -0.174 4.174 20 C 0.072 3.928 21 N -0.314 5.314 22 C 0.330 3.670 23 O -0.388 6.388 24 C -0.219 4.219 25 C -0.187 4.187 26 C -0.183 4.183 27 C -0.149 4.149 28 C -0.085 4.085 29 C -0.113 4.113 30 C -0.197 4.197 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.139 0.861 34 H 0.236 0.764 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.250 0.750 38 H 0.145 0.855 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.133 0.867 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 20.328 -28.136 0.934 34.724 hybrid contribution 0.958 0.457 -0.013 1.061 sum 21.286 -27.679 0.921 34.929 Atomic orbital electron populations 1.70046 1.05948 1.27650 1.46094 1.25283 0.95840 0.98819 0.96553 0.85717 0.78984 0.80088 0.78702 1.19884 1.20263 1.19146 1.21329 0.91833 0.80855 1.52615 0.89053 1.83988 1.34218 1.11444 1.78333 1.19418 0.90402 0.88067 0.92920 1.21086 0.94129 0.98661 1.09912 1.20716 0.99491 0.90481 0.97620 1.17225 0.90371 0.85261 1.12809 1.43126 1.29270 1.14293 1.43234 1.18190 0.81040 0.87120 0.79846 1.90804 1.71340 1.36996 1.40912 1.19990 0.98403 0.95075 1.01190 1.21084 0.91640 0.97394 0.95636 1.20848 1.02474 0.93846 1.00200 1.17889 0.93043 0.86829 0.95047 1.43400 1.11890 1.04800 1.71297 1.19886 0.88480 0.83334 0.75250 1.90751 1.15139 1.85525 1.47392 1.22157 1.02664 0.92839 1.04287 1.23005 1.02898 1.01952 0.90867 1.23015 1.01178 0.92988 1.01072 1.21006 0.95749 0.99031 0.99130 1.21204 0.98425 0.91824 0.97055 1.20355 0.91238 0.97565 1.02141 1.19984 0.99784 0.89521 1.10371 0.92041 0.85153 0.86145 0.76382 0.83965 0.84937 0.75003 0.85479 0.88029 0.87433 0.87596 0.87166 0.84403 0.85120 0.86677 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -11.07 9.44 30.88 0.29 -10.78 16 8 H 0.09 2.42 5.29 -52.49 -0.28 2.14 16 9 O -0.18 -5.10 9.75 0.01 0.00 -5.10 16 10 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 11 C -0.22 -5.01 9.12 -39.42 -0.36 -5.37 16 12 C -0.06 -1.30 8.65 -39.41 -0.34 -1.64 16 13 C 0.04 0.66 6.28 -83.65 -0.53 0.13 16 14 N -0.65 -9.56 5.28 -10.76 -0.06 -9.62 16 15 C 0.55 8.47 7.50 -12.45 -0.09 8.38 16 16 O -0.52 -10.02 14.02 5.28 0.07 -9.94 16 17 C -0.14 -1.71 5.88 -104.95 -0.62 -2.33 16 18 C -0.04 -0.41 9.58 -39.22 -0.38 -0.78 16 19 C -0.15 -1.26 9.94 -39.46 -0.39 -1.65 16 20 C 0.17 1.43 6.27 -83.73 -0.52 0.90 16 21 N -0.67 -3.99 5.32 -9.86 -0.05 -4.04 16 22 C 0.54 4.00 7.34 -10.99 -0.08 3.92 16 23 O -0.51 -5.77 13.95 5.56 0.08 -5.69 16 24 C -0.20 -0.82 6.19 -91.77 -0.57 -1.39 16 25 C -0.15 -0.51 10.24 -26.69 -0.27 -0.78 16 26 C -0.15 -0.61 10.05 -26.69 -0.27 -0.88 16 27 C -0.13 -1.25 8.62 -39.46 -0.34 -1.60 16 28 C -0.07 -0.65 9.53 -39.22 -0.37 -1.03 16 29 C -0.09 -1.67 9.96 -39.41 -0.39 -2.06 16 30 C -0.18 -3.74 9.98 -39.42 -0.39 -4.14 16 31 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.13 3.01 5.71 -52.48 -0.30 2.71 16 33 H 0.12 2.44 6.42 -52.49 -0.34 2.10 16 34 H 0.40 4.36 6.85 -40.82 -0.28 4.08 16 35 H 0.14 1.53 7.64 -52.49 -0.40 1.12 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.41 1.03 8.82 -40.82 -0.36 0.67 16 38 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.11 0.66 7.67 -51.93 -0.40 0.26 16 43 H 0.14 1.36 6.43 -52.48 -0.34 1.02 16 44 H 0.13 1.02 6.41 -52.48 -0.34 0.68 16 45 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -36.48 395.86 -9.36 -45.84 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.12 Total: 8.25 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -5.98 Total: -16.76 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.65 Total: -38.40 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.15 Total: -20.73 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.48 -9.36 -45.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018828890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.140 kcal (2) G-P(sol) polarization free energy of solvation -36.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds