Wall clock time and date at job start Tue Mar 31 2020 05:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48501 * 109.46901 * 269.99575 * 3 2 1 5 5 H 1.48498 * 109.47179 * 29.99363 * 3 2 1 6 6 H 1.48499 * 109.47074 * 149.99627 * 3 2 1 7 7 C 1.38638 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99548 * 180.02562 * 7 2 1 9 9 O 1.34805 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.35784 * 116.99909 * 185.42715 * 9 7 2 11 11 C 1.38905 * 119.99351 * 5.86934 * 10 9 7 12 12 C 1.37997 * 120.00320 * 180.02562 * 11 10 9 13 13 C 1.38939 * 119.99769 * 359.97438 * 12 11 10 14 14 N 1.39909 * 120.00805 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99835 * 33.46414 * 14 13 12 16 16 O 1.21597 * 119.99986 * 5.18934 * 15 14 13 17 17 C 1.47569 * 120.00157 * 185.18848 * 15 14 13 18 18 C 1.39763 * 120.07825 * 179.97438 * 17 15 14 19 19 C 1.37666 * 119.92497 * 180.02562 * 18 17 15 20 20 C 1.39131 * 120.07548 * 0.02562 * 19 18 17 21 21 N 1.39444 * 119.92533 * 179.97438 * 20 19 18 22 22 C 1.34773 * 120.00328 * 146.47911 * 21 20 19 23 23 O 1.21280 * 119.99662 * 354.75608 * 22 21 20 24 24 C 1.50691 * 120.00439 * 174.75477 * 22 21 20 25 25 C 1.53003 * 117.50155 * 248.74809 * 24 22 21 26 26 C 1.53005 * 117.50402 * 180.08884 * 24 22 21 27 27 C 1.39136 * 120.14943 * 0.27764 * 20 19 18 28 28 C 1.37660 * 120.07768 * 359.44480 * 27 20 19 29 29 C 1.38941 * 119.99025 * 0.27701 * 13 12 11 30 30 C 1.37998 * 119.99648 * 359.47194 * 29 13 12 31 31 H 0.96999 * 119.99748 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.00198 * 0.02562 * 11 10 9 33 33 H 1.08002 * 120.00710 * 179.97438 * 12 11 10 34 34 H 0.97005 * 120.00414 * 213.46376 * 14 13 12 35 35 H 1.07994 * 120.03451 * 0.02562 * 18 17 15 36 36 H 1.07996 * 119.96017 * 179.97438 * 19 18 17 37 37 H 0.97008 * 119.99677 * 326.20180 * 21 20 19 38 38 H 1.09007 * 115.55119 * 34.41351 * 24 22 21 39 39 H 1.09000 * 117.49804 * 359.97438 * 25 24 22 40 40 H 1.09000 * 117.50181 * 145.02111 * 25 24 22 41 41 H 1.09000 * 117.49989 * 214.98185 * 26 24 22 42 42 H 1.09000 * 117.49286 * 359.97377 * 26 24 22 43 43 H 1.08007 * 119.95922 * 179.70212 * 27 20 19 44 44 H 1.08004 * 120.04158 * 180.27509 * 28 27 20 45 45 H 1.07998 * 120.00326 * 179.70041 * 29 13 12 46 46 H 1.07999 * 120.00061 * 180.25350 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0695 -3.5042 0.1155 11 6 3.4367 -3.4263 0.3484 12 6 4.1837 -4.5808 0.4647 13 6 3.5681 -5.8210 0.3495 14 7 4.3252 -6.9916 0.4679 15 6 5.3845 -7.0277 1.3004 16 8 5.6264 -6.0764 2.0181 17 6 6.2508 -8.2217 1.3409 18 6 7.3500 -8.2606 2.2032 19 6 8.1564 -9.3758 2.2381 20 6 7.8785 -10.4631 1.4158 21 7 8.6976 -11.5910 1.4533 22 6 8.1691 -12.8147 1.2544 23 8 6.9690 -12.9452 1.1377 24 6 9.0692 -14.0208 1.1771 25 6 9.2032 -14.7166 -0.1789 26 6 8.4088 -15.3818 0.9478 27 6 6.7886 -10.4253 0.5516 28 6 5.9748 -9.3156 0.5158 29 6 2.2015 -5.8986 0.1113 30 6 1.4539 -4.7440 0.0002 31 1 -0.4850 0.8401 -0.0004 32 1 3.9151 -2.4623 0.4384 33 1 5.2468 -4.5204 0.6454 34 1 4.0877 -7.7773 -0.0491 35 1 7.5665 -7.4167 2.8414 36 1 9.0062 -9.4063 2.9038 37 1 9.6486 -11.4944 1.6185 38 1 9.9514 -13.9909 1.8167 39 1 8.6400 -14.3022 -1.0151 40 1 10.1733 -15.1448 -0.4313 41 1 8.8566 -16.2472 1.4363 42 1 7.3231 -15.4047 0.8533 43 1 6.5785 -11.2692 -0.0888 44 1 5.1264 -9.2886 -0.1520 45 1 1.7236 -6.8625 0.0168 46 1 0.3909 -4.8043 -0.1809 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018828890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:20 Heat of formation + Delta-G solvation = -29.728101 kcal Electronic energy + Delta-G solvation = -30056.899179 eV Core-core repulsion = 25684.526785 eV Total energy + Delta-G solvation = -4372.372395 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.96810 -41.48356 -40.50432 -39.45304 -38.13747 -37.13221 -35.96211 -35.47200 -34.18535 -32.12128 -31.90687 -31.39258 -29.39027 -27.34312 -26.36426 -24.43687 -24.03897 -23.79841 -23.30873 -22.81143 -21.38056 -21.11466 -20.08117 -19.44603 -18.86278 -18.66274 -18.35459 -17.96569 -16.77382 -16.56416 -16.25304 -16.13688 -15.97591 -15.76525 -15.59083 -15.50457 -15.35659 -15.24269 -14.92778 -14.66264 -14.46786 -14.20728 -13.84013 -13.66271 -13.59056 -13.57312 -13.26777 -13.21788 -12.68771 -12.50429 -12.44997 -12.35342 -12.13568 -11.60049 -11.53293 -11.47681 -11.40344 -11.27499 -11.03309 -10.91069 -10.55487 -10.08464 -9.86520 -9.31721 -8.61240 -8.47476 -6.14091 -0.38666 0.31935 0.50444 0.56395 1.26255 1.35002 1.43579 1.52276 1.78995 1.91830 2.04932 2.18098 2.73249 2.84705 2.90935 3.15016 3.48876 3.52402 3.62390 3.77787 3.83970 3.87808 3.95777 4.07420 4.10048 4.18859 4.22240 4.34671 4.44229 4.46578 4.61734 4.71258 4.76617 4.88393 4.93341 5.01418 5.04223 5.06711 5.10123 5.15815 5.22636 5.25775 5.31448 5.32718 5.43958 5.55669 5.68032 5.82220 6.01178 6.12507 6.30616 6.46465 6.97181 7.00762 7.13158 7.76150 8.75420 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.001419 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.829045 B =19733.098631 C =20379.996712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.019 4.019 3 Si 1.016 2.984 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.414 4.414 8 H 0.097 0.903 9 O -0.227 6.227 10 C 0.107 3.893 11 C -0.225 4.225 12 C -0.074 4.074 13 C 0.061 3.939 14 N -0.645 5.645 15 C 0.552 3.448 16 O -0.566 6.566 17 C -0.164 4.164 18 C -0.046 4.046 19 C -0.144 4.144 20 C 0.172 3.828 21 N -0.656 5.656 22 C 0.538 3.462 23 O -0.558 6.558 24 C -0.196 4.196 25 C -0.140 4.140 26 C -0.156 4.156 27 C -0.141 4.141 28 C -0.058 4.058 29 C -0.078 4.078 30 C -0.178 4.178 31 H 0.273 0.727 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.422 0.578 35 H 0.136 0.864 36 H 0.166 0.834 37 H 0.433 0.567 38 H 0.160 0.840 39 H 0.088 0.912 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.136 0.864 44 H 0.150 0.850 45 H 0.166 0.834 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.637 -32.131 0.651 40.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.217 4.217 3 Si 0.836 3.164 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.115 0.885 9 O -0.133 6.133 10 C 0.056 3.944 11 C -0.245 4.245 12 C -0.094 4.094 13 C -0.032 4.032 14 N -0.292 5.292 15 C 0.343 3.657 16 O -0.446 6.446 17 C -0.168 4.168 18 C -0.065 4.065 19 C -0.164 4.164 20 C 0.077 3.923 21 N -0.302 5.302 22 C 0.328 3.672 23 O -0.435 6.435 24 C -0.217 4.217 25 C -0.178 4.178 26 C -0.193 4.193 27 C -0.161 4.161 28 C -0.078 4.078 29 C -0.098 4.098 30 C -0.197 4.197 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.262 0.738 35 H 0.154 0.846 36 H 0.183 0.817 37 H 0.273 0.727 38 H 0.177 0.823 39 H 0.107 0.893 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.104 0.896 43 H 0.153 0.847 44 H 0.168 0.832 45 H 0.183 0.817 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 23.620 -31.489 1.023 39.377 hybrid contribution 0.148 0.998 -0.013 1.009 sum 23.768 -30.492 1.009 38.674 Atomic orbital electron populations 1.70178 1.07877 1.28814 1.48658 1.26531 0.96852 1.02550 0.95787 0.84623 0.77725 0.74748 0.79349 1.18575 1.19368 1.18110 1.21768 0.92395 0.81587 1.53303 0.88522 1.83947 1.35565 1.12451 1.81338 1.19933 0.91212 0.88341 0.94881 1.21075 0.93888 0.99169 1.10389 1.20792 0.99572 0.90863 0.98217 1.17383 0.90949 0.85863 1.09030 1.43053 1.28776 1.13776 1.43574 1.18741 0.80714 0.87544 0.78731 1.90789 1.72271 1.38841 1.42657 1.19745 0.99045 0.94445 1.03541 1.21189 0.91791 0.98144 0.95403 1.21069 1.02738 0.92523 1.00066 1.18066 0.92704 0.87510 0.94066 1.43368 1.12668 1.03764 1.70354 1.20525 0.88355 0.84315 0.74033 1.90737 1.17229 1.86186 1.49341 1.22262 1.02879 0.91024 1.05495 1.23090 1.03640 1.01038 0.90006 1.23057 1.00081 0.93925 1.02253 1.21100 0.96416 0.98853 0.99741 1.21334 0.98873 0.91009 0.96541 1.20774 0.90729 0.98525 0.99800 1.20313 1.00653 0.89259 1.09496 0.91770 0.86377 0.85926 0.73784 0.84568 0.81683 0.72719 0.82280 0.89301 0.84923 0.85585 0.89649 0.84651 0.83202 0.81679 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.91 13.67 21.61 0.30 -56.62 16 2 C -0.02 -1.12 5.49 84.83 0.47 -0.66 16 3 Si 1.02 44.06 29.55 68.60 2.03 46.09 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.41 -24.84 9.44 67.92 0.64 -24.20 16 8 H 0.10 5.42 5.29 -2.91 -0.02 5.40 16 9 O -0.23 -13.90 9.75 -22.87 -0.22 -14.12 16 10 C 0.11 5.50 6.65 22.59 0.15 5.65 16 11 C -0.23 -10.78 9.12 22.37 0.20 -10.58 16 12 C -0.07 -3.09 8.65 22.38 0.19 -2.89 16 13 C 0.06 2.15 6.28 38.19 0.24 2.39 16 14 N -0.65 -17.31 5.28 -306.20 -1.62 -18.93 16 15 C 0.55 16.28 7.50 86.71 0.65 16.93 16 16 O -0.57 -21.53 14.02 -4.02 -0.06 -21.58 16 17 C -0.16 -3.66 5.88 -20.08 -0.12 -3.78 16 18 C -0.05 -0.90 9.58 22.50 0.22 -0.68 16 19 C -0.14 -1.94 9.94 22.35 0.22 -1.72 16 20 C 0.17 2.49 6.27 38.36 0.24 2.73 16 21 N -0.66 -5.78 5.32 -303.50 -1.61 -7.39 16 22 C 0.54 6.72 7.34 87.65 0.64 7.36 16 23 O -0.56 -11.93 13.95 -3.03 -0.04 -11.97 16 24 C -0.20 -1.03 6.19 -11.54 -0.07 -1.10 16 25 C -0.14 -0.57 10.24 30.62 0.31 -0.26 16 26 C -0.16 -1.01 10.05 30.62 0.31 -0.70 16 27 C -0.14 -2.45 8.62 22.35 0.19 -2.26 16 28 C -0.06 -1.03 9.53 22.50 0.21 -0.82 16 29 C -0.08 -2.63 9.96 22.38 0.22 -2.40 16 30 C -0.18 -7.50 9.98 22.37 0.22 -7.28 16 31 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.12 5.81 5.71 -2.91 -0.02 5.79 16 33 H 0.12 5.03 6.42 -2.91 -0.02 5.02 16 34 H 0.42 7.72 6.85 -92.70 -0.64 7.08 16 35 H 0.14 2.81 7.64 -2.91 -0.02 2.79 16 36 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 37 H 0.43 0.43 8.82 -92.70 -0.82 -0.39 16 38 H 0.16 -0.19 8.14 -2.38 -0.02 -0.21 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.08 1.00 7.67 -2.39 -0.02 0.98 16 43 H 0.14 2.47 6.43 -2.91 -0.02 2.45 16 44 H 0.15 1.90 6.41 -2.91 -0.02 1.88 16 45 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 46 H 0.13 5.22 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -86.17 395.86 3.54 -82.63 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -0.38 Total: 26.16 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 5.15 Total: -24.27 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -2.94 Total: -82.94 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.32 Total: -47.67 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -86.17 3.54 -82.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018828890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.905 kcal (2) G-P(sol) polarization free energy of solvation -86.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds