Wall clock time and date at job start Tue Mar 31 2020 05:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86792 * 120.00302 * 2 1 4 4 H 1.48502 * 109.47270 * 269.99975 * 3 2 1 5 5 H 1.48503 * 109.47030 * 29.99696 * 3 2 1 6 6 H 1.48493 * 109.47406 * 149.99668 * 3 2 1 7 7 C 1.39920 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99755 * 196.82792 * 7 2 1 9 9 C 1.41139 * 119.99753 * 16.82971 * 7 2 1 10 10 C 1.40878 * 120.16074 * 205.35375 * 9 7 2 11 11 C 1.36349 * 119.83562 * 180.02562 * 10 9 7 12 12 C 1.39515 * 120.16660 * 0.02562 * 11 10 9 13 13 N 1.39125 * 119.84179 * 179.97438 * 12 11 10 14 14 C 1.34772 * 119.99909 * 34.46373 * 13 12 11 15 15 O 1.21561 * 119.99971 * 5.10923 * 14 13 12 16 16 C 1.47798 * 120.00003 * 185.11112 * 14 13 12 17 17 C 1.39598 * 120.14433 * 359.72699 * 16 14 13 18 18 C 1.37954 * 119.84928 * 179.72128 * 17 16 14 19 19 C 1.38364 * 120.14533 * 0.57855 * 18 17 16 20 20 C 1.50702 * 119.85333 * 179.69819 * 19 18 17 21 21 N 1.46899 * 109.46798 * 269.97454 * 20 19 18 22 22 C 1.47004 * 111.00193 * 293.63199 * 21 20 19 23 23 C 1.53099 * 109.25823 * 177.61004 * 22 21 20 24 24 O 1.43014 * 109.25762 * 56.85326 * 23 22 21 25 25 C 1.43021 * 113.73686 * 301.32828 * 24 23 22 26 26 C 1.47018 * 110.99605 * 169.99944 * 21 20 19 27 27 C 1.38366 * 120.29646 * 359.67001 * 19 18 17 28 28 C 1.37951 * 120.15070 * 0.04800 * 27 19 18 29 29 C 1.39515 * 120.32571 * 0.23244 * 12 11 10 30 30 C 1.36366 * 120.16599 * 359.48544 * 29 12 11 31 31 H 0.96997 * 120.00227 * 0.02562 * 1 2 3 32 32 H 1.08002 * 120.08054 * 359.97438 * 10 9 7 33 33 H 1.07995 * 119.92231 * 179.97438 * 11 10 9 34 34 H 0.97004 * 119.99597 * 214.47305 * 13 12 11 35 35 H 1.08006 * 120.07762 * 359.97110 * 17 16 14 36 36 H 1.07996 * 119.92934 * 180.26847 * 18 17 16 37 37 H 1.09007 * 109.46965 * 29.97434 * 20 19 18 38 38 H 1.09001 * 109.47030 * 149.97113 * 20 19 18 39 39 H 1.09007 * 109.50537 * 297.54485 * 22 21 20 40 40 H 1.09001 * 109.50876 * 57.67463 * 22 21 20 41 41 H 1.08993 * 109.50962 * 296.91479 * 23 22 21 42 42 H 1.09005 * 109.54185 * 176.80655 * 23 22 21 43 43 H 1.09004 * 109.50138 * 298.74103 * 25 24 23 44 44 H 1.08995 * 109.54220 * 178.63262 * 25 24 23 45 45 H 1.09010 * 109.50566 * 302.32585 * 26 21 20 46 46 H 1.08999 * 109.50680 * 62.41078 * 26 21 20 47 47 H 1.08008 * 119.92531 * 180.02562 * 27 19 18 48 48 H 1.07994 * 120.07625 * 179.97438 * 28 27 19 49 49 H 1.07996 * 119.91872 * 179.72499 * 29 12 11 50 50 H 1.07996 * 120.08814 * 180.23312 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4402 2.6526 0.7000 6 1 3.5402 1.4401 0.7001 7 6 2.0083 -1.2118 0.0005 8 1 3.0535 -1.2316 0.2713 9 6 1.3479 -2.4080 -0.3528 10 6 1.8187 -3.6453 0.1288 11 6 1.1759 -4.7969 -0.2171 12 6 0.0549 -4.7522 -1.0464 13 7 -0.5955 -5.9314 -1.3956 14 6 -0.6669 -6.9481 -0.5138 15 8 -0.2457 -6.8025 0.6172 16 6 -1.2573 -8.2402 -0.9219 17 6 -1.7470 -8.4089 -2.2182 18 6 -2.2916 -9.6193 -2.5943 19 6 -2.3638 -10.6609 -1.6864 20 6 -2.9662 -11.9782 -2.1023 21 7 -4.4095 -11.9645 -1.8292 22 6 -4.6718 -11.9084 -0.3838 23 6 -6.1826 -11.8357 -0.1472 24 8 -6.8120 -12.9596 -0.7683 25 6 -6.5779 -13.0449 -2.1767 26 6 -5.0711 -13.1299 -2.4338 27 6 -1.8849 -10.4987 -0.3984 28 6 -1.3327 -9.2954 -0.0109 29 6 -0.4141 -3.5311 -1.5316 30 6 0.2150 -2.3706 -1.1895 31 1 -0.4850 0.8400 -0.0004 32 1 2.6871 -3.6817 0.7699 33 1 1.5359 -5.7463 0.1509 34 1 -0.9974 -6.0219 -2.2738 35 1 -1.6961 -7.5950 -2.9263 36 1 -2.6669 -9.7526 -3.5981 37 1 -2.7995 -12.1335 -3.1683 38 1 -2.4976 -12.7857 -1.5398 39 1 -4.2712 -12.8027 0.0937 40 1 -4.1942 -11.0244 0.0388 41 1 -6.5746 -10.9147 -0.5784 42 1 -6.3851 -11.8511 0.9238 43 1 -6.9814 -12.1589 -2.6669 44 1 -7.0658 -13.9349 -2.5741 45 1 -4.8850 -13.1374 -3.5079 46 1 -4.6763 -14.0436 -1.9896 47 1 -1.9440 -11.3159 0.3054 48 1 -0.9596 -9.1699 0.9947 49 1 -1.2798 -3.5044 -2.1767 50 1 -0.1513 -1.4257 -1.5628 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019800238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:11 Heat of formation + Delta-G solvation = -22.820376 kcal Electronic energy + Delta-G solvation = -31049.953698 eV Core-core repulsion = 26813.713940 eV Total energy + Delta-G solvation = -4236.239759 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.46015 -39.85395 -38.68928 -37.19430 -36.08482 -34.52611 -33.11794 -32.09779 -31.59099 -31.07021 -29.59558 -29.09641 -28.21593 -25.63300 -24.63733 -24.43442 -22.74604 -22.46994 -21.38844 -20.82638 -20.69083 -19.65525 -17.89582 -17.32574 -17.03906 -16.63149 -16.39908 -15.94635 -15.72441 -15.42363 -15.23085 -15.09164 -14.75217 -14.59878 -14.51659 -14.36635 -13.94746 -13.67053 -13.43732 -13.11169 -12.90032 -12.67344 -12.46954 -12.40612 -12.12132 -12.02921 -11.84306 -11.83252 -11.47868 -11.35079 -11.16003 -11.13711 -11.02803 -10.99265 -10.75654 -10.11762 -10.02636 -9.60199 -9.44279 -9.17387 -9.14666 -9.03150 -8.92577 -8.77308 -7.56262 -6.99741 -6.75851 -4.31680 0.72579 1.22918 2.57961 2.94862 3.05914 3.08961 3.10130 3.19997 3.41025 3.52877 3.68545 3.91594 3.96369 4.27308 4.45889 4.48769 4.57340 4.61671 4.71534 4.72484 4.78970 4.82968 4.93720 5.05537 5.09786 5.13978 5.20868 5.23280 5.33076 5.43325 5.43557 5.54071 5.64118 5.69536 5.83715 6.12517 6.17956 6.26311 6.28628 6.41321 6.43408 6.48305 6.70691 6.71612 6.76264 6.92887 7.02707 7.17165 7.26885 7.57742 7.70701 7.87026 8.01598 8.25805 8.26900 8.57306 8.73374 8.86332 8.97986 10.15906 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.001491 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.078112 B =18770.664478 C =19067.029358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.106 3.894 10 C -0.215 4.215 11 C -0.074 4.074 12 C -0.010 4.010 13 N -0.642 5.642 14 C 0.537 3.463 15 O -0.528 6.528 16 C -0.118 4.118 17 C -0.089 4.089 18 C -0.104 4.104 19 C -0.066 4.066 20 C 0.094 3.906 21 N -0.531 5.531 22 C 0.013 3.987 23 C 0.063 3.937 24 O -0.387 6.387 25 C 0.063 3.937 26 C 0.017 3.983 27 C -0.123 4.123 28 C -0.063 4.063 29 C -0.112 4.112 30 C -0.153 4.153 31 H 0.281 0.719 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.394 0.606 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.123 0.877 48 H 0.136 0.864 49 H 0.090 0.910 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.771 -23.344 -7.401 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.103 3.897 10 C -0.235 4.235 11 C -0.094 4.094 12 C -0.102 4.102 13 N -0.284 5.284 14 C 0.324 3.676 15 O -0.406 6.406 16 C -0.121 4.121 17 C -0.108 4.108 18 C -0.123 4.123 19 C -0.067 4.067 20 C -0.033 4.033 21 N -0.256 5.256 22 C -0.115 4.115 23 C -0.014 4.014 24 O -0.306 6.306 25 C -0.014 4.014 26 C -0.111 4.111 27 C -0.142 4.142 28 C -0.082 4.082 29 C -0.132 4.132 30 C -0.173 4.173 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.228 0.772 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.141 0.859 48 H 0.154 0.846 49 H 0.109 0.891 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.982 -22.803 -6.697 26.181 hybrid contribution 0.604 0.253 -0.192 0.682 sum -10.378 -22.551 -6.889 25.762 Atomic orbital electron populations 1.69841 1.07577 1.29276 1.35001 1.25941 0.94761 1.01392 0.92306 0.86277 0.80488 0.80465 0.79301 1.19263 1.20311 1.18581 1.19585 0.97843 0.91125 1.40025 0.90289 1.17679 0.91316 0.92165 0.88529 1.20646 1.03805 0.92596 1.06480 1.20234 0.93658 0.97702 0.97779 1.17136 0.98220 0.83894 1.10951 1.42894 1.55120 1.14139 1.16294 1.18257 0.80235 0.83891 0.85179 1.90771 1.48152 1.82416 1.19282 1.20152 1.02184 0.94926 0.94864 1.21356 0.96689 0.97654 0.95128 1.20885 0.99349 0.92336 0.99704 1.19800 0.97596 0.95365 0.93917 1.21079 0.86812 0.93798 1.01650 1.62215 1.10241 1.40849 1.12326 1.22912 0.97798 1.02385 0.88450 1.22687 0.90804 0.89396 0.98490 1.87989 1.73562 1.47733 1.21274 1.22658 0.93941 1.02490 0.82272 1.22810 0.95794 0.91820 1.00651 1.20994 0.99894 0.97577 0.95692 1.21256 0.95719 0.91414 0.99776 1.20229 0.99126 0.91747 1.02091 1.20893 0.99289 0.96313 1.00779 0.90812 0.88640 0.88115 0.77171 0.85489 0.85499 0.89484 0.93556 0.93871 0.88807 0.92059 0.88297 0.92130 0.88434 0.89459 0.93862 0.85890 0.84577 0.89140 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.38 10.95 55.55 0.61 -19.77 16 2 C 0.07 1.84 5.15 -17.33 -0.09 1.75 16 3 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.46 -12.10 9.04 -37.85 -0.34 -12.44 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.11 2.84 5.57 -106.80 -0.59 2.25 16 10 C -0.22 -5.50 9.74 -39.26 -0.38 -5.88 16 11 C -0.07 -1.80 8.57 -39.79 -0.34 -2.14 16 12 C -0.01 -0.22 6.27 -83.60 -0.52 -0.74 16 13 N -0.64 -11.66 5.25 -10.61 -0.06 -11.71 16 14 C 0.54 9.87 7.49 -12.35 -0.09 9.78 16 15 O -0.53 -11.81 14.07 5.31 0.07 -11.74 16 16 C -0.12 -1.65 5.87 -104.97 -0.62 -2.27 16 17 C -0.09 -0.99 9.54 -39.18 -0.37 -1.36 16 18 C -0.10 -0.97 9.68 -39.64 -0.38 -1.36 16 19 C -0.07 -0.59 4.90 -104.53 -0.51 -1.11 16 20 C 0.09 0.66 5.11 -4.98 -0.03 0.64 16 21 N -0.53 -4.03 4.72 -235.74 -1.11 -5.14 16 22 C 0.01 0.10 5.27 -3.72 -0.02 0.08 16 23 C 0.06 0.49 7.01 37.21 0.26 0.75 16 24 O -0.39 -3.45 10.83 -35.23 -0.38 -3.83 16 25 C 0.06 0.41 7.01 37.21 0.26 0.67 16 26 C 0.02 0.11 5.64 -3.71 -0.02 0.09 16 27 C -0.12 -1.21 7.91 -39.64 -0.31 -1.52 16 28 C -0.06 -0.79 9.60 -39.18 -0.38 -1.17 16 29 C -0.11 -2.57 9.90 -39.78 -0.39 -2.96 16 30 C -0.15 -3.93 8.63 -39.26 -0.34 -4.26 16 31 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 32 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.10 2.41 6.47 -52.49 -0.34 2.07 16 34 H 0.39 5.62 6.86 -40.82 -0.28 5.34 16 35 H 0.13 1.18 6.42 -52.48 -0.34 0.84 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.09 0.51 7.98 -51.92 -0.41 0.10 16 38 H 0.05 0.31 8.06 -51.93 -0.42 -0.11 16 39 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 40 H 0.09 0.78 6.01 -51.93 -0.31 0.46 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.41 8.09 -51.92 -0.42 -0.01 16 46 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.12 0.96 8.00 -52.48 -0.42 0.54 16 48 H 0.14 1.79 7.65 -52.49 -0.40 1.39 16 49 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 50 H 0.12 3.18 6.18 -52.49 -0.32 2.86 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -31.63 405.53 -12.02 -43.66 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.02 Total: 10.14 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -5.22 Total: -21.22 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.56 Total: -36.62 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.31 Total: -15.57 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.63 -12.02 -43.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019800238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.835 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds