Wall clock time and date at job start Tue Mar 31 2020 04:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47660 * 2 1 4 4 C 1.35794 * 117.00626 * 179.97438 * 3 2 1 5 5 C 1.38927 * 119.91890 * 179.97438 * 4 3 2 6 6 C 1.37781 * 120.08666 * 180.02562 * 5 4 3 7 7 C 1.39648 * 119.91354 * 359.97438 * 6 5 4 8 8 C 1.47836 * 120.08254 * 179.97438 * 7 6 5 9 9 C 1.40993 * 120.97507 * 114.99980 * 8 7 6 10 10 C 1.43200 * 120.51837 * 0.02562 * 9 8 7 11 11 N 6.56069 * 150.91255 * 79.81599 * 2 1 3 12 12 C 1.40754 * 118.96402 * 179.97438 * 9 8 7 13 13 N 1.38083 * 119.52786 * 180.02562 * 12 9 8 14 14 N 1.32280 * 120.94425 * 0.02562 * 12 9 8 15 15 C 1.32514 * 122.17996 * 359.97438 * 14 12 9 16 16 S 1.76198 * 119.54465 * 180.02562 * 15 14 12 17 17 C 1.76200 * 99.99721 * 359.97438 * 16 15 14 18 18 H 1.07996 * 120.00420 * 359.97438 * 17 16 15 19 19 C 1.38860 * 119.99828 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99758 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00157 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47069 * 89.99901 * 21 19 17 23 23 H 1.48497 * 109.47201 * 210.00611 * 21 19 17 24 24 H 1.48509 * 109.46987 * 330.00388 * 21 19 17 25 25 C 1.40768 * 120.91494 * 359.71617 * 15 14 12 26 26 C 1.43210 * 120.52641 * 180.28848 * 25 15 14 27 27 N 7.10167 * 138.85331 * 317.62903 * 2 1 3 28 28 C 1.39644 * 119.83098 * 0.25432 * 7 6 5 29 29 C 1.37783 * 119.91063 * 359.49341 * 28 7 6 30 30 H 1.08996 * 109.47098 * 300.01100 * 1 2 3 31 31 H 1.09002 * 109.46688 * 60.00332 * 1 2 3 32 32 H 1.08998 * 109.46938 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47601 * 239.98955 * 2 1 3 34 34 H 1.09002 * 109.46688 * 119.99668 * 2 1 3 35 35 H 1.08001 * 119.95317 * 0.04018 * 5 4 3 36 36 H 1.08001 * 120.04228 * 180.02562 * 6 5 4 37 37 H 0.97001 * 119.99755 * 0.02562 * 13 12 9 38 38 H 0.97003 * 120.00302 * 180.02562 * 13 12 9 39 39 H 0.96996 * 119.99219 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.04243 * 179.72443 * 28 7 6 41 41 H 1.07997 * 119.95557 * 180.27235 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3527 1.5251 0.0005 5 6 3.8819 2.8097 0.0000 6 6 5.2472 2.9942 0.0000 7 6 6.0995 1.8880 0.0011 8 6 7.5651 2.0817 0.0006 9 6 8.3517 1.6715 1.0965 10 6 7.7442 1.0555 2.2376 11 7 7.2633 0.5639 3.1392 12 6 9.7436 1.8759 1.0509 13 7 10.5251 1.4782 2.1175 14 7 10.3137 2.4436 0.0009 15 6 9.6146 2.8447 -1.0510 16 16 10.4457 3.5923 -2.4129 17 6 12.1061 3.5365 -1.8260 18 1 12.3224 3.1116 -0.8569 19 6 13.1365 4.0399 -2.6089 20 7 14.3758 3.9987 -2.1707 21 14 12.7625 4.7755 -4.2848 22 1 12.4966 6.2293 -4.1390 23 1 13.9258 4.5728 -5.1852 24 1 11.5675 4.1093 -4.8623 25 6 8.2178 2.6758 -1.0981 26 6 7.4712 3.1068 -2.2417 27 7 6.8778 3.4523 -3.1491 28 6 5.5638 0.5984 -0.0032 29 6 4.1973 0.4220 0.0020 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.2220 3.6647 -0.0001 36 1 5.6578 3.9931 0.0001 37 1 10.1142 1.0609 2.8908 38 1 11.4850 1.6161 2.0936 39 1 15.0955 4.3499 -2.7178 40 1 6.2198 -0.2596 -0.0069 41 1 3.7823 -0.5750 0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020011033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:40 Heat of formation + Delta-G solvation = 75.833609 kcal Electronic energy + Delta-G solvation = -28359.975501 eV Core-core repulsion = 24331.393133 eV Total energy + Delta-G solvation = -4028.582368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.089 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.57995 -39.88504 -37.79178 -36.56949 -36.00658 -34.52696 -33.16604 -32.89095 -31.96691 -31.14438 -29.74548 -29.06236 -26.13825 -24.78430 -24.44677 -23.60597 -22.20296 -21.34300 -19.93587 -18.68847 -18.46611 -17.89894 -17.16517 -16.65865 -16.39467 -16.08885 -15.45560 -15.37745 -14.90078 -14.70560 -14.62853 -14.38059 -13.76415 -13.63109 -13.54549 -13.28918 -13.24129 -13.09632 -12.96281 -12.75621 -12.71425 -12.48654 -12.19527 -12.11769 -12.01979 -11.96118 -11.75634 -11.43923 -11.24499 -11.07143 -10.96059 -10.80428 -10.33917 -9.74920 -9.36363 -9.27364 -9.17771 -9.13407 -8.26673 -8.09103 -7.35842 -6.68419 -4.43995 0.73840 0.96949 1.21662 1.39870 2.28602 2.82683 2.91702 3.00581 3.06268 3.08744 3.11355 3.14679 3.47650 3.58011 3.61840 3.89964 4.08245 4.17081 4.19398 4.39497 4.52875 4.56253 4.56575 4.66764 4.74883 4.78565 4.88427 5.06917 5.16787 5.20351 5.33313 5.41685 5.44545 5.51359 5.64929 5.73787 5.84401 6.00635 6.02139 6.12776 6.33896 6.37562 6.54451 7.18090 7.20330 7.43985 7.56921 7.70263 7.96172 8.35058 8.46287 8.70204 10.38227 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.013933 B = 0.002677 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.108082 B =10457.709837 C =12133.209141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.315 6.315 4 C 0.139 3.861 5 C -0.150 4.150 6 C -0.049 4.049 7 C -0.105 4.105 8 C 0.155 3.845 9 C -0.205 4.205 10 C 0.279 3.721 11 N -0.446 5.446 12 C 0.497 3.503 13 N -0.832 5.832 14 N -0.528 5.528 15 C 0.222 3.778 16 S 0.092 5.908 17 C -0.529 4.529 18 H 0.133 0.867 19 C 0.101 3.899 20 N -0.845 5.845 21 Si 0.839 3.161 22 H -0.259 1.259 23 H -0.262 1.262 24 H -0.237 1.237 25 C -0.150 4.150 26 C 0.277 3.723 27 N -0.430 5.430 28 C -0.048 4.048 29 C -0.208 4.208 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.406 0.594 38 H 0.414 0.586 39 H 0.279 0.721 40 H 0.130 0.870 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.268 -6.747 5.647 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.229 6.229 4 C 0.093 3.907 5 C -0.169 4.169 6 C -0.067 4.067 7 C -0.106 4.106 8 C 0.142 3.858 9 C -0.222 4.222 10 C -0.035 4.035 11 N -0.124 5.124 12 C 0.245 3.755 13 N -0.373 5.373 14 N -0.252 5.252 15 C -0.032 4.032 16 S 0.347 5.653 17 C -0.676 4.676 18 H 0.151 0.849 19 C -0.112 4.112 20 N -0.477 5.477 21 Si 0.662 3.338 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.161 1.161 25 C -0.167 4.167 26 C -0.038 4.038 27 N -0.107 5.107 28 C -0.066 4.066 29 C -0.227 4.227 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.236 0.764 38 H 0.245 0.755 39 H 0.089 0.911 40 H 0.147 0.853 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.177 -6.088 4.292 19.644 hybrid contribution 0.619 -0.561 0.760 1.130 sum -17.558 -6.650 5.052 19.442 Atomic orbital electron populations 1.21775 0.92693 1.02869 1.03559 1.22810 0.95912 0.81957 1.01578 1.86041 1.19101 1.29406 1.88351 1.19122 0.82181 0.94144 0.95210 1.20316 0.94908 0.94877 1.06775 1.21042 0.91869 0.98513 0.95258 1.18557 0.90933 0.93893 1.07173 1.18346 0.90741 0.87640 0.89113 1.15791 0.91575 1.20689 0.94162 1.25084 0.93474 0.92479 0.92423 1.81125 1.07488 1.12329 1.11473 1.18154 0.85397 0.85083 0.86860 1.42209 1.11056 1.66121 1.17928 1.67738 1.36224 1.20524 1.00680 1.23362 0.90225 0.93061 0.96540 1.83411 1.06160 1.61297 1.14402 1.22996 0.87857 1.46509 1.10282 0.84940 1.24859 0.94291 0.94007 0.98014 1.69838 0.99213 1.40923 1.37714 0.87064 0.80938 0.81687 0.84089 1.18358 1.18665 1.16108 1.15984 0.91171 1.16714 0.92819 1.25037 0.93079 0.93121 0.92542 1.81225 1.08738 1.10468 1.10283 1.20967 0.94393 0.96049 0.95237 1.21113 0.93951 0.98116 1.09518 0.91502 0.91471 0.90352 0.91870 0.91916 0.84759 0.84643 0.76381 0.75510 0.91080 0.85257 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.51 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.51 10.13 -19.10 -0.19 -3.70 16 4 C 0.14 1.68 6.69 -39.07 -0.26 1.42 16 5 C -0.15 -1.83 9.97 -39.49 -0.39 -2.22 16 6 C -0.05 -0.62 9.10 -39.22 -0.36 -0.98 16 7 C -0.10 -1.43 4.15 -104.92 -0.44 -1.86 16 8 C 0.16 2.28 5.39 -103.91 -0.56 1.72 16 9 C -0.20 -2.93 5.81 -105.98 -0.62 -3.55 16 10 C 0.28 3.89 12.71 -22.54 -0.29 3.60 16 11 N -0.45 -6.65 18.52 41.76 0.77 -5.87 16 12 C 0.50 7.54 7.74 -155.40 -1.20 6.33 16 13 N -0.83 -9.93 8.96 31.25 0.28 -9.65 16 14 N -0.53 -9.74 8.40 -10.68 -0.09 -9.83 16 15 C 0.22 4.21 7.01 -16.30 -0.11 4.10 16 16 S 0.09 1.96 18.58 -107.50 -2.00 -0.04 16 17 C -0.53 -13.15 9.80 30.96 0.30 -12.84 16 18 H 0.13 3.51 6.75 -52.49 -0.35 3.16 16 19 C 0.10 2.55 5.50 -17.46 -0.10 2.46 16 20 N -0.84 -22.33 13.96 55.49 0.77 -21.55 16 21 Si 0.84 18.23 27.74 -169.99 -4.71 13.52 16 22 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.24 -5.00 6.74 56.52 0.38 -4.62 16 25 C -0.15 -2.51 5.80 -105.99 -0.62 -3.12 16 26 C 0.28 4.83 12.93 -22.40 -0.29 4.54 16 27 N -0.43 -7.94 18.55 41.92 0.78 -7.17 16 28 C -0.05 -0.60 9.10 -39.22 -0.36 -0.96 16 29 C -0.21 -2.38 9.02 -39.49 -0.36 -2.74 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 34 H 0.06 0.44 7.65 -51.93 -0.40 0.05 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.41 4.07 7.62 -40.82 -0.31 3.76 16 38 H 0.41 4.70 8.95 -40.82 -0.37 4.33 16 39 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.13 1.18 6.28 -52.49 -0.33 0.85 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -28.24 384.06 -7.50 -35.74 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.85 Total: 6.78 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -5.05 Total: -4.00 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 2.52 Total: -54.08 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.19 Total: -3.70 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.71 Total: 13.52 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.00 Total: -0.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.24 -7.50 -35.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020011033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.572 kcal (2) G-P(sol) polarization free energy of solvation -28.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds