Wall clock time and date at job start Tue Mar 31 2020 04:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47660 * 2 1 4 4 C 1.35794 * 117.00626 * 179.97438 * 3 2 1 5 5 C 1.38927 * 119.91890 * 179.97438 * 4 3 2 6 6 C 1.37781 * 120.08666 * 180.02562 * 5 4 3 7 7 C 1.39648 * 119.91354 * 359.97438 * 6 5 4 8 8 C 1.47836 * 120.08254 * 179.97438 * 7 6 5 9 9 C 1.40993 * 120.97507 * 114.99980 * 8 7 6 10 10 C 1.43200 * 120.51837 * 0.02562 * 9 8 7 11 11 N 6.56069 * 150.91255 * 79.81599 * 2 1 3 12 12 C 1.40754 * 118.96402 * 179.97438 * 9 8 7 13 13 N 1.38083 * 119.52786 * 180.02562 * 12 9 8 14 14 N 1.32280 * 120.94425 * 0.02562 * 12 9 8 15 15 C 1.32514 * 122.17996 * 359.97438 * 14 12 9 16 16 S 1.76198 * 119.54465 * 180.02562 * 15 14 12 17 17 C 1.76200 * 99.99721 * 359.97438 * 16 15 14 18 18 H 1.07996 * 120.00420 * 359.97438 * 17 16 15 19 19 C 1.38860 * 119.99828 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99758 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00157 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47069 * 89.99901 * 21 19 17 23 23 H 1.48497 * 109.47201 * 210.00611 * 21 19 17 24 24 H 1.48509 * 109.46987 * 330.00388 * 21 19 17 25 25 C 1.40768 * 120.91494 * 359.71617 * 15 14 12 26 26 C 1.43210 * 120.52641 * 180.28848 * 25 15 14 27 27 N 7.10167 * 138.85331 * 317.62903 * 2 1 3 28 28 C 1.39644 * 119.83098 * 0.25432 * 7 6 5 29 29 C 1.37783 * 119.91063 * 359.49341 * 28 7 6 30 30 H 1.08996 * 109.47098 * 300.01100 * 1 2 3 31 31 H 1.09002 * 109.46688 * 60.00332 * 1 2 3 32 32 H 1.08998 * 109.46938 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47601 * 239.98955 * 2 1 3 34 34 H 1.09002 * 109.46688 * 119.99668 * 2 1 3 35 35 H 1.08001 * 119.95317 * 0.04018 * 5 4 3 36 36 H 1.08001 * 120.04228 * 180.02562 * 6 5 4 37 37 H 0.97001 * 119.99755 * 0.02562 * 13 12 9 38 38 H 0.97003 * 120.00302 * 180.02562 * 13 12 9 39 39 H 0.96996 * 119.99219 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.04243 * 179.72443 * 28 7 6 41 41 H 1.07997 * 119.95557 * 180.27235 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3527 1.5251 0.0005 5 6 3.8819 2.8097 0.0000 6 6 5.2472 2.9942 0.0000 7 6 6.0995 1.8880 0.0011 8 6 7.5651 2.0817 0.0006 9 6 8.3517 1.6715 1.0965 10 6 7.7442 1.0555 2.2376 11 7 7.2633 0.5639 3.1392 12 6 9.7436 1.8759 1.0509 13 7 10.5251 1.4782 2.1175 14 7 10.3137 2.4436 0.0009 15 6 9.6146 2.8447 -1.0510 16 16 10.4457 3.5923 -2.4129 17 6 12.1061 3.5365 -1.8260 18 1 12.3224 3.1116 -0.8569 19 6 13.1365 4.0399 -2.6089 20 7 14.3758 3.9987 -2.1707 21 14 12.7625 4.7755 -4.2848 22 1 12.4966 6.2293 -4.1390 23 1 13.9258 4.5728 -5.1852 24 1 11.5675 4.1093 -4.8623 25 6 8.2178 2.6758 -1.0981 26 6 7.4712 3.1068 -2.2417 27 7 6.8778 3.4523 -3.1491 28 6 5.5638 0.5984 -0.0032 29 6 4.1973 0.4220 0.0020 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.2220 3.6647 -0.0001 36 1 5.6578 3.9931 0.0001 37 1 10.1142 1.0609 2.8908 38 1 11.4850 1.6161 2.0936 39 1 15.0955 4.3499 -2.7178 40 1 6.2198 -0.2596 -0.0069 41 1 3.7823 -0.5750 0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020011033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:40 Heat of formation + Delta-G solvation = 60.796909 kcal Electronic energy + Delta-G solvation = -28360.627541 eV Core-core repulsion = 24331.393133 eV Total energy + Delta-G solvation = -4029.234408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.089 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73261 -40.94997 -38.75559 -37.88771 -37.31773 -35.77842 -34.75859 -34.33017 -32.71077 -32.02754 -31.06742 -30.09188 -27.96851 -26.09791 -25.33804 -24.67492 -23.11135 -22.32548 -21.26065 -20.25266 -19.36402 -19.20743 -18.46571 -18.03666 -17.16181 -17.08349 -17.00531 -16.63736 -16.06921 -16.00978 -15.92615 -15.43718 -14.92975 -14.61896 -14.61698 -14.48426 -14.46654 -14.32531 -14.09651 -14.01015 -13.85606 -13.67927 -13.47104 -13.30370 -13.14611 -13.11615 -12.92764 -12.77778 -12.68226 -12.18514 -12.01155 -11.86068 -11.68790 -11.24159 -11.06303 -10.88175 -10.57471 -10.11212 -9.54257 -9.19439 -8.86589 -8.53016 -6.31661 -0.53882 -0.31528 0.28206 0.31256 0.72669 1.31145 1.39727 1.46528 1.57536 1.69572 1.72649 2.14414 2.17610 2.22715 2.25619 2.51398 2.60848 2.81394 2.83015 2.92931 3.09805 3.22146 3.72471 3.82215 3.85753 4.04621 4.11292 4.11892 4.20893 4.33134 4.35545 4.41874 4.52105 4.69924 4.82387 4.89417 4.93499 4.95538 5.13222 5.22406 5.28359 5.38227 5.62758 5.74693 6.04214 6.25146 6.36064 6.47219 6.47825 6.56959 6.86307 7.08632 8.57669 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.013933 B = 0.002677 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.108082 B =10457.709837 C =12133.209141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.327 6.327 4 C 0.137 3.863 5 C -0.159 4.159 6 C -0.054 4.054 7 C -0.127 4.127 8 C 0.173 3.827 9 C -0.180 4.180 10 C 0.292 3.708 11 N -0.445 5.445 12 C 0.496 3.504 13 N -0.813 5.813 14 N -0.553 5.553 15 C 0.235 3.765 16 S 0.054 5.946 17 C -0.538 4.538 18 H 0.105 0.895 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.888 3.112 22 H -0.257 1.257 23 H -0.256 1.256 24 H -0.229 1.229 25 C -0.149 4.149 26 C 0.287 3.713 27 N -0.446 5.446 28 C -0.052 4.052 29 C -0.208 4.208 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.419 0.581 38 H 0.419 0.581 39 H 0.280 0.720 40 H 0.140 0.860 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.228 -8.242 6.689 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.241 6.241 4 C 0.091 3.909 5 C -0.178 4.178 6 C -0.072 4.072 7 C -0.128 4.128 8 C 0.160 3.840 9 C -0.197 4.197 10 C -0.023 4.023 11 N -0.122 5.122 12 C 0.244 3.756 13 N -0.354 5.354 14 N -0.277 5.277 15 C -0.020 4.020 16 S 0.306 5.694 17 C -0.686 4.686 18 H 0.123 0.877 19 C -0.152 4.152 20 N -0.529 5.529 21 Si 0.710 3.290 22 H -0.181 1.181 23 H -0.180 1.180 24 H -0.153 1.153 25 C -0.166 4.166 26 C -0.027 4.027 27 N -0.123 5.123 28 C -0.070 4.070 29 C -0.226 4.226 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.252 0.748 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.169 -7.640 5.437 23.153 hybrid contribution 1.142 -0.330 0.806 1.436 sum -20.027 -7.970 6.243 22.440 Atomic orbital electron populations 1.21809 0.91380 1.04228 1.03226 1.23128 0.97032 0.80605 1.02484 1.86048 1.18483 1.31571 1.87997 1.19300 0.82874 0.94304 0.94374 1.20513 0.94855 0.95721 1.06676 1.21142 0.92238 0.98603 0.95241 1.18555 0.89887 0.94854 1.09479 1.18439 0.91671 0.85877 0.88042 1.15778 0.91086 1.18888 0.93926 1.24740 0.93230 0.92272 0.92010 1.81167 1.07578 1.12027 1.11471 1.18267 0.86026 0.84579 0.86704 1.42225 1.11297 1.64640 1.17236 1.67682 1.37202 1.21300 1.01475 1.23212 0.90685 0.92184 0.95911 1.83216 1.04350 1.65169 1.16619 1.22884 0.89777 1.46538 1.09396 0.87729 1.25544 0.94120 0.94479 1.01046 1.69923 1.00118 1.43572 1.39316 0.86298 0.81117 0.80998 0.80621 1.18101 1.17980 1.15290 1.15926 0.90119 1.17216 0.93365 1.25031 0.92683 0.92660 0.92342 1.81228 1.09419 1.10974 1.10663 1.21144 0.95156 0.95804 0.94919 1.21367 0.93445 0.99207 1.08586 0.91779 0.91869 0.88149 0.90945 0.90925 0.83575 0.84212 0.74849 0.74872 0.90988 0.84183 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 71.98 0.74 -0.64 16 2 C 0.04 0.53 5.46 71.98 0.39 0.93 16 3 O -0.33 -6.50 10.13 -91.24 -0.92 -7.42 16 4 C 0.14 2.98 6.69 22.60 0.15 3.13 16 5 C -0.16 -3.55 9.97 22.33 0.22 -3.33 16 6 C -0.05 -1.29 9.10 22.50 0.20 -1.08 16 7 C -0.13 -3.17 4.15 -20.06 -0.08 -3.25 16 8 C 0.17 4.75 5.39 -19.40 -0.10 4.65 16 9 C -0.18 -4.73 5.81 -20.74 -0.12 -4.85 16 10 C 0.29 7.24 12.71 88.36 1.12 8.36 16 11 N -0.45 -11.80 18.52 18.98 0.35 -11.45 16 12 C 0.50 14.23 7.74 133.81 1.04 15.27 16 13 N -0.81 -17.82 8.96 -55.04 -0.49 -18.31 16 14 N -0.55 -20.28 8.40 -187.70 -1.58 -21.85 16 15 C 0.24 8.89 7.01 85.21 0.60 9.49 16 16 S 0.05 2.36 18.58 -56.49 -1.05 1.31 16 17 C -0.54 -27.83 9.80 67.97 0.67 -27.16 16 18 H 0.10 5.83 6.75 -2.91 -0.02 5.81 16 19 C 0.06 2.94 5.50 84.89 0.47 3.41 16 20 N -0.89 -49.40 13.96 21.65 0.30 -49.10 16 21 Si 0.89 38.54 27.74 68.60 1.90 40.44 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.23 -9.53 6.74 99.48 0.67 -8.86 16 25 C -0.15 -4.83 5.80 -20.75 -0.12 -4.95 16 26 C 0.29 9.78 12.93 88.31 1.14 10.92 16 27 N -0.45 -16.09 18.55 19.03 0.35 -15.74 16 28 C -0.05 -1.15 9.10 22.50 0.20 -0.95 16 29 C -0.21 -4.11 9.02 22.33 0.20 -3.91 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 34 H 0.07 0.79 7.65 -2.39 -0.02 0.77 16 35 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.42 7.24 7.62 -92.71 -0.71 6.54 16 38 H 0.42 8.95 8.95 -92.71 -0.83 8.12 16 39 H 0.28 14.33 8.31 -92.71 -0.77 13.55 16 40 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 41 H 0.15 2.21 6.28 -2.91 -0.02 2.20 16 Total: -1.00 -62.20 384.06 5.16 -57.04 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.43 Total: 19.07 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 6.72 Total: 6.02 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -1.06 Total: -116.45 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.92 Total: -7.42 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 1.90 Total: 40.44 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.05 Total: 1.31 kcal Total: -62.20 5.16 -57.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020011033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.832 kcal (2) G-P(sol) polarization free energy of solvation -62.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds