Wall clock time and date at job start Tue Mar 31 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21289 * 120.00410 * 2 1 4 4 N 1.34775 * 119.99796 * 179.97438 * 2 1 3 5 5 C 1.39933 * 119.99783 * 175.84689 * 4 2 1 6 6 C 1.38866 * 120.06731 * 35.20375 * 5 4 2 7 7 C 1.38115 * 119.92605 * 179.97438 * 6 5 4 8 8 C 1.38285 * 120.07138 * 359.97316 * 7 6 5 9 9 S 1.76197 * 119.93093 * 180.02562 * 8 7 6 10 10 O 1.42106 * 106.40166 * 336.45326 * 9 8 7 11 11 O 1.42096 * 106.40060 * 203.54136 * 9 8 7 12 12 N 1.65595 * 107.22313 * 89.99646 * 9 8 7 13 13 C 1.47082 * 120.88085 * 269.72575 * 12 9 8 14 14 C 1.53694 * 108.27645 * 128.75273 * 13 12 9 15 15 N 1.46897 * 109.25918 * 54.08100 * 14 13 12 16 16 C 1.46903 * 111.00440 * 172.60521 * 15 14 13 17 17 C 1.50703 * 109.46546 * 50.34462 * 16 15 14 18 18 H 1.08000 * 120.00186 * 5.23892 * 17 16 15 19 19 C 1.37874 * 119.99717 * 185.24471 * 17 16 15 20 20 N 1.31518 * 119.99890 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00133 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46920 * 89.99680 * 21 19 17 23 23 H 1.48498 * 109.47082 * 209.99886 * 21 19 17 24 24 H 1.48500 * 109.46967 * 329.99860 * 21 19 17 25 25 C 1.46900 * 111.26817 * 296.75696 * 15 14 13 26 26 C 1.47081 * 120.88049 * 89.99821 * 12 9 8 27 27 C 1.38285 * 120.14036 * 0.27734 * 8 7 6 28 28 C 1.38112 * 120.06690 * 359.49287 * 27 8 7 29 29 H 1.08998 * 109.47116 * 240.00586 * 1 2 3 30 30 H 1.09002 * 109.46816 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47026 * 119.99939 * 1 2 3 32 32 H 0.96996 * 120.00373 * 355.85082 * 4 2 1 33 33 H 1.08002 * 120.04146 * 359.95006 * 6 5 4 34 34 H 1.08001 * 119.96577 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.62436 * 248.51688 * 13 12 9 36 36 H 1.08996 * 109.62619 * 9.10105 * 13 12 9 37 37 H 1.09003 * 109.65030 * 294.07740 * 14 13 12 38 38 H 1.09008 * 109.42068 * 173.94405 * 14 13 12 39 39 H 1.09000 * 109.47320 * 170.33894 * 16 15 14 40 40 H 1.09000 * 109.46826 * 290.34486 * 16 15 14 41 41 H 0.97005 * 119.99683 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.49586 * 303.14148 * 25 15 14 43 43 H 1.09004 * 109.49109 * 183.06176 * 25 15 14 44 44 H 1.09002 * 109.62464 * 350.90165 * 26 12 9 45 45 H 1.09000 * 109.62872 * 111.48172 * 26 12 9 46 46 H 1.07995 * 119.96153 * 179.72755 * 27 8 7 47 47 H 1.08002 * 120.03275 * 180.25531 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5774 -1.1688 -0.0872 6 6 4.3141 -0.1629 0.5241 7 6 5.6924 -0.1677 0.4361 8 6 6.3389 -1.1730 -0.2594 9 16 8.0975 -1.1758 -0.3688 10 8 8.5141 0.1680 -0.1686 11 8 8.4260 -1.9265 -1.5297 12 7 8.6677 -2.0397 0.9237 13 6 8.9778 -1.3748 2.1985 14 6 8.2633 -2.1368 3.3258 15 7 8.6329 -3.5570 3.2607 16 6 8.1127 -4.2903 4.4226 17 6 6.6453 -3.9904 4.5898 18 1 6.1295 -3.3906 3.8547 19 6 5.9615 -4.4818 5.6815 20 7 6.5896 -5.2126 6.5766 21 14 4.1427 -4.1096 5.8894 22 1 3.3416 -5.1681 5.2236 23 1 3.8075 -4.0709 7.3355 24 1 3.8333 -2.7940 5.2741 25 6 8.1779 -4.1690 2.0052 26 6 8.8832 -3.4913 0.8255 27 6 5.6078 -2.1732 -0.8737 28 6 4.2295 -2.1767 -0.7853 29 1 -0.3633 -0.5137 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6978 -2.0061 0.0617 33 1 3.8099 0.6225 1.0675 34 1 6.2660 0.6146 0.9110 35 1 10.0546 -1.3904 2.3671 36 1 8.6237 -0.3444 2.1695 37 1 7.1841 -2.0361 3.2096 38 1 8.5657 -1.7261 4.2892 39 1 8.2495 -5.3605 4.2678 40 1 8.6513 -3.9809 5.3183 41 1 6.1083 -5.5586 7.3445 42 1 7.1001 -4.0401 1.9073 43 1 8.4185 -5.2321 2.0107 44 1 8.4666 -3.8607 -0.1115 45 1 9.9510 -3.7065 0.8647 46 1 6.1154 -2.9545 -1.4198 47 1 3.6593 -2.9605 -1.2618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020059767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:52 Heat of formation + Delta-G solvation = -64.546461 kcal Electronic energy + Delta-G solvation = -32147.977571 eV Core-core repulsion = 27844.113380 eV Total energy + Delta-G solvation = -4303.864192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.84850 -38.69658 -38.33551 -37.20634 -35.77573 -35.19958 -34.47273 -32.27211 -31.35566 -31.19884 -30.66212 -29.02494 -27.69580 -25.03426 -23.62920 -23.28691 -23.04105 -22.04150 -20.92025 -20.04662 -18.77109 -18.32492 -17.82055 -17.37961 -17.16013 -16.33595 -16.12045 -15.70274 -14.95188 -14.92488 -14.74668 -14.43327 -14.39674 -14.17331 -14.07006 -13.88835 -13.64657 -13.53190 -13.26116 -13.11004 -12.93813 -12.66273 -12.42621 -12.31545 -12.01980 -11.80759 -11.66704 -11.65574 -11.23889 -11.16978 -11.03763 -10.99277 -10.80672 -10.68027 -10.52551 -10.29169 -10.20896 -9.88325 -9.66911 -9.16137 -8.84806 -8.67551 -8.51786 -7.25595 -6.11165 -4.20325 0.39246 0.70197 1.20114 2.11712 2.60320 2.99539 3.16925 3.25077 3.26824 3.43297 3.85713 4.23921 4.31323 4.31793 4.64812 4.71459 4.77753 4.84175 4.87483 5.00418 5.10450 5.19148 5.19671 5.27106 5.38795 5.48158 5.59241 5.67038 5.79024 5.79311 5.84307 5.89087 5.99281 5.99567 6.13392 6.14191 6.23799 6.48749 6.58442 6.71624 6.71847 6.79539 6.91514 7.18126 7.45685 7.64142 7.82111 7.94003 8.18508 8.23040 8.90088 9.46641 10.93906 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.006654 B = 0.004642 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4207.012232 B = 6030.948486 C = 9306.953320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.521 6.521 4 N -0.677 5.677 5 C 0.195 3.805 6 C -0.142 4.142 7 C 0.002 3.998 8 C -0.690 4.690 9 S 2.694 3.306 10 O -0.960 6.960 11 O -0.962 6.962 12 N -0.993 5.993 13 C 0.123 3.877 14 C 0.052 3.948 15 N -0.538 5.538 16 C 0.187 3.813 17 C -0.550 4.550 18 H 0.057 0.943 19 C 0.067 3.933 20 N -0.889 5.889 21 Si 0.886 3.114 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.276 1.276 25 C 0.048 3.952 26 C 0.126 3.874 27 C 0.001 3.999 28 C -0.166 4.166 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.416 0.584 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.027 0.973 40 H 0.037 0.963 41 H 0.263 0.737 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.143 0.857 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 5.739 -14.284 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.395 6.395 4 N -0.323 5.323 5 C 0.100 3.900 6 C -0.162 4.162 7 C -0.018 4.018 8 C -0.777 4.777 9 S 2.785 3.215 10 O -0.950 6.950 11 O -0.952 6.952 12 N -0.832 5.832 13 C -0.002 4.002 14 C -0.078 4.078 15 N -0.262 5.262 16 C 0.062 3.938 17 C -0.589 4.589 18 H 0.075 0.925 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.714 3.286 22 H -0.208 1.208 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.083 4.083 26 C 0.001 3.999 27 C -0.019 4.019 28 C -0.187 4.187 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.252 0.748 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.045 0.955 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.161 0.839 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.490 6.799 -14.747 17.488 hybrid contribution -3.177 -0.582 0.690 3.303 sum -9.668 6.218 -14.056 18.158 Atomic orbital electron populations 1.21939 0.90239 1.06236 1.04802 1.21112 0.91105 0.82972 0.74895 1.90760 1.70501 1.31215 1.47061 1.43750 1.05136 1.10453 1.72959 1.18027 0.82531 0.95709 0.93732 1.21355 0.93799 1.00172 1.00909 1.20811 0.94385 0.94675 0.91921 1.31051 1.27584 1.05290 1.13764 1.01880 0.73601 0.73175 0.72889 1.93560 1.80812 1.34888 1.85769 1.93549 1.82973 1.72394 1.46282 1.57665 1.79139 1.18311 1.28092 1.21819 1.01216 0.95247 0.81941 1.22323 0.98267 0.90059 0.97144 1.62404 1.58944 1.01823 1.03030 1.19774 0.93074 0.93425 0.87521 1.21748 0.95962 1.33220 1.07952 0.92495 1.24940 0.97975 0.94920 0.95778 1.69937 1.36180 1.34605 1.12002 0.86697 0.85935 0.78570 0.77421 1.20760 1.21062 1.20061 1.22277 0.97533 0.98337 0.90131 1.21655 1.01775 0.77685 0.98813 1.20667 0.93439 0.94854 0.92904 1.20963 0.95050 1.00520 1.02140 0.88769 0.88343 0.88891 0.74778 0.83636 0.83967 0.90468 0.89849 0.93621 0.90278 0.95514 0.94485 0.92763 0.94322 0.90499 0.89908 0.90437 0.83903 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.32 36.00 0.37 -0.51 16 2 C 0.51 5.06 7.78 -10.99 -0.09 4.97 16 3 O -0.52 -7.42 14.54 5.55 0.08 -7.34 16 4 N -0.68 -6.29 5.34 -9.86 -0.05 -6.34 16 5 C 0.20 2.44 6.29 -83.69 -0.53 1.91 16 6 C -0.14 -2.02 8.69 -39.39 -0.34 -2.37 16 7 C 0.00 0.03 9.51 -39.61 -0.38 -0.35 16 8 C -0.69 -9.79 5.98 -39.55 -0.24 -10.02 16 9 S 2.69 39.88 5.70 -107.50 -0.61 39.27 16 10 O -0.96 -15.94 16.05 -57.17 -0.92 -16.86 16 11 O -0.96 -15.45 16.05 -57.17 -0.92 -16.37 16 12 N -0.99 -14.61 3.32 -112.97 -0.38 -14.98 16 13 C 0.12 1.83 6.56 -3.36 -0.02 1.81 16 14 C 0.05 0.95 4.99 -3.47 -0.02 0.93 16 15 N -0.54 -10.65 4.83 -235.46 -1.14 -11.78 16 16 C 0.19 4.54 5.20 -4.97 -0.03 4.52 16 17 C -0.55 -14.29 7.83 -34.44 -0.27 -14.56 16 18 H 0.06 1.47 5.91 -52.49 -0.31 1.16 16 19 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 21 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 C 0.05 0.82 5.36 -3.70 -0.02 0.80 16 26 C 0.13 1.80 6.53 -3.60 -0.02 1.78 16 27 C 0.00 0.02 9.51 -39.61 -0.38 -0.36 16 28 C -0.17 -1.90 9.97 -39.39 -0.39 -2.29 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.42 2.39 8.82 -40.82 -0.36 2.03 16 33 H 0.15 2.13 6.25 -52.49 -0.33 1.80 16 34 H 0.14 1.86 7.61 -52.49 -0.40 1.46 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.12 7.21 -51.93 -0.37 0.75 16 37 H 0.05 0.91 6.36 -51.93 -0.33 0.58 16 38 H 0.08 1.45 8.11 -51.92 -0.42 1.03 16 39 H 0.03 0.69 7.89 -51.93 -0.41 0.28 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.04 0.72 7.51 -51.93 -0.39 0.33 16 43 H 0.08 1.29 7.95 -51.93 -0.41 0.88 16 44 H 0.08 1.03 7.22 -51.93 -0.37 0.66 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.14 1.56 7.60 -52.49 -0.40 1.16 16 47 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 393.60 15.07 5.93 5.93 Total: -1.00 -35.07 393.60 -11.33 -46.40 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.60 Total: 3.01 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -2.44 Total: -12.03 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.83 Total: -57.58 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.75 Total: -40.57 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 39.88 SS G_CDS: -0.61 Total: 39.27 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.07 -11.33 -46.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020059767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.150 kcal (2) G-P(sol) polarization free energy of solvation -35.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds