Wall clock time and date at job start Tue Mar 31 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47070 * 2 1 4 4 C 1.53006 * 109.46826 * 240.00219 * 2 1 3 5 5 C 1.50690 * 109.47190 * 120.00365 * 2 1 3 6 6 C 1.38237 * 120.00499 * 60.00076 * 5 2 1 7 7 C 1.38232 * 120.00062 * 179.97438 * 6 5 2 8 8 C 1.38237 * 120.00261 * 359.97438 * 7 6 5 9 9 S 1.76201 * 120.00076 * 179.97438 * 8 7 6 10 10 O 1.42104 * 106.40209 * 336.46481 * 9 8 7 11 11 O 1.42099 * 106.40361 * 203.54155 * 9 8 7 12 12 N 1.65597 * 107.21552 * 90.00231 * 9 8 7 13 13 C 1.47080 * 120.88338 * 269.72108 * 12 9 8 14 14 C 1.53698 * 108.27668 * 128.75300 * 13 12 9 15 15 N 1.46890 * 109.25687 * 54.08682 * 14 13 12 16 16 C 1.46906 * 111.00357 * 172.60584 * 15 14 13 17 17 C 1.50698 * 109.46998 * 59.39791 * 16 15 14 18 18 H 1.08005 * 119.99741 * 5.01909 * 17 16 15 19 19 C 1.37870 * 119.99943 * 185.02289 * 17 16 15 20 20 N 1.31521 * 119.99926 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00013 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47078 * 90.00281 * 21 19 17 23 23 H 1.48503 * 109.46874 * 209.99740 * 21 19 17 24 24 H 1.48491 * 109.47247 * 329.99782 * 21 19 17 25 25 C 1.46901 * 111.26992 * 296.75318 * 15 14 13 26 26 C 1.47080 * 120.88100 * 89.99885 * 12 9 8 27 27 C 1.38229 * 119.99890 * 0.28038 * 8 7 6 28 28 C 1.38236 * 119.99993 * 359.50966 * 27 8 7 29 29 H 1.08997 * 109.47298 * 299.99830 * 1 2 3 30 30 H 1.09003 * 109.47481 * 59.99926 * 1 2 3 31 31 H 1.09000 * 109.47449 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47364 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47496 * 300.00105 * 3 2 1 34 34 H 1.08997 * 109.47409 * 60.00147 * 3 2 1 35 35 H 1.08994 * 109.46996 * 299.99452 * 4 2 1 36 36 H 1.09004 * 109.47176 * 60.00241 * 4 2 1 37 37 H 1.09003 * 109.46968 * 179.97438 * 4 2 1 38 38 H 1.07993 * 119.99362 * 359.97132 * 6 5 2 39 39 H 1.08005 * 119.99933 * 179.97438 * 7 6 5 40 40 H 1.08993 * 109.62998 * 248.52598 * 13 12 9 41 41 H 1.09001 * 109.62611 * 9.10638 * 13 12 9 42 42 H 1.08996 * 109.65298 * 294.07967 * 14 13 12 43 43 H 1.09008 * 109.42019 * 173.94839 * 14 13 12 44 44 H 1.08997 * 109.47212 * 179.39783 * 16 15 14 45 45 H 1.09000 * 109.46738 * 299.39808 * 16 15 14 46 46 H 0.97000 * 119.99982 * 179.97438 * 20 19 17 47 47 H 1.08991 * 109.49571 * 303.14700 * 25 15 14 48 48 H 1.09000 * 109.49782 * 183.06020 * 25 15 14 49 49 H 1.08996 * 109.62734 * 350.89754 * 26 12 9 50 50 H 1.09008 * 109.62593 * 111.48016 * 26 12 9 51 51 H 1.07995 * 120.00314 * 179.72605 * 27 8 7 52 52 H 1.08001 * 120.00173 * 180.27798 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2303 6 6 1.6984 -2.0339 1.4491 7 6 2.1597 -2.6857 2.5775 8 6 2.9553 -2.0142 3.4869 9 16 3.5427 -2.8448 4.9255 10 8 2.6422 -3.9177 5.1652 11 8 3.8221 -1.8354 5.8858 12 7 4.9969 -3.5336 4.5344 13 6 5.0645 -4.9014 3.9979 14 6 5.9063 -4.8738 2.7122 15 7 7.2072 -4.2545 2.9981 16 6 8.1083 -4.3654 1.8432 17 6 7.4857 -3.6825 0.6528 18 1 6.5563 -3.1436 0.7645 19 6 8.1023 -3.7456 -0.5787 20 7 7.5586 -3.1501 -1.6177 21 14 9.7100 -4.6771 -0.7716 22 1 9.4236 -6.0920 -1.1195 23 1 10.5158 -4.0549 -1.8527 24 1 10.4685 -4.6247 0.5039 25 6 7.0511 -2.8534 3.4113 26 6 6.2558 -2.7959 4.7199 27 6 3.2848 -0.6893 3.2709 28 6 2.8271 -0.0387 2.1403 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1299 -0.7209 -1.2496 38 1 1.0771 -2.5586 0.7384 39 1 1.8985 -3.7196 2.7486 40 1 5.5313 -5.5595 4.7307 41 1 4.0590 -5.2558 3.7712 42 1 5.3883 -4.2953 1.9473 43 1 6.0589 -5.8930 2.3570 44 1 9.0604 -3.8895 2.0781 45 1 8.2752 -5.4175 1.6123 46 1 7.9926 -3.1942 -2.4840 47 1 6.5172 -2.3031 2.6368 48 1 8.0340 -2.4073 3.5632 49 1 6.0382 -1.7578 4.9709 50 1 6.8349 -3.2556 5.5209 51 1 3.9027 -0.1633 3.9835 52 1 3.0883 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020059773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:45 Heat of formation + Delta-G solvation = -66.832318 kcal Electronic energy + Delta-G solvation = -32879.289787 eV Core-core repulsion = 28776.585479 eV Total energy + Delta-G solvation = -4102.704308 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.176 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.93949 -39.84035 -38.46059 -37.42763 -37.02230 -36.09324 -34.23721 -32.29490 -32.02188 -31.31416 -30.01690 -28.35824 -28.19089 -26.73825 -24.66230 -24.63263 -23.54453 -23.47410 -21.48175 -20.42181 -19.98400 -19.25839 -18.85815 -18.41701 -17.24737 -16.74956 -16.56058 -16.30084 -15.97554 -15.86824 -15.80789 -15.44599 -15.43063 -15.26993 -14.76718 -14.51253 -14.49363 -14.42537 -14.14240 -13.98276 -13.87835 -13.42654 -13.34962 -13.26782 -13.13429 -12.95040 -12.92194 -12.87814 -12.63872 -12.58502 -12.47496 -12.27647 -12.15037 -12.03399 -11.98006 -11.88806 -11.79334 -11.64735 -11.54934 -11.41787 -10.77257 -10.22809 -10.06875 -10.03176 -8.97429 -8.30038 -6.34668 -0.72888 -0.21608 0.27680 1.36460 1.38467 1.49568 1.82109 2.34552 2.42621 2.70181 3.05844 3.15581 3.29057 3.47131 3.61361 3.66908 3.86472 3.97627 4.00051 4.16356 4.23035 4.24636 4.27296 4.41795 4.44523 4.45303 4.57443 4.67361 4.70207 4.70751 4.79308 4.81555 4.83095 4.86197 4.90723 4.95618 4.96101 5.00218 5.04225 5.07151 5.12266 5.12821 5.15591 5.23660 5.24304 5.31361 5.35447 5.50927 5.51426 5.54100 5.82373 6.11126 6.33846 6.40199 6.72153 7.32409 8.85781 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.007334 B = 0.004409 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3817.124951 B = 6349.557432 C = 9187.697462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.020 4.020 6 C -0.146 4.146 7 C -0.031 4.031 8 C -0.693 4.693 9 S 2.710 3.290 10 O -0.976 6.976 11 O -0.976 6.976 12 N -0.995 5.995 13 C 0.130 3.870 14 C 0.050 3.950 15 N -0.524 5.524 16 C 0.160 3.840 17 C -0.545 4.545 18 H 0.034 0.966 19 C 0.013 3.987 20 N -0.946 5.946 21 Si 0.946 3.054 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.245 1.245 25 C 0.048 3.952 26 C 0.130 3.870 27 C -0.030 4.030 28 C -0.152 4.152 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.016 0.984 43 H 0.082 0.918 44 H 0.032 0.968 45 H 0.032 0.968 46 H 0.264 0.736 47 H 0.014 0.986 48 H 0.085 0.915 49 H 0.100 0.900 50 H 0.099 0.901 51 H 0.147 0.853 52 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.497 4.685 7.435 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.036 4.036 3 C -0.203 4.203 4 C -0.197 4.197 5 C -0.020 4.020 6 C -0.164 4.164 7 C -0.050 4.050 8 C -0.781 4.781 9 S 2.803 3.197 10 O -0.967 6.967 11 O -0.966 6.966 12 N -0.834 5.834 13 C 0.005 3.995 14 C -0.080 4.080 15 N -0.247 5.247 16 C 0.032 3.968 17 C -0.584 4.584 18 H 0.052 0.948 19 C -0.185 4.185 20 N -0.587 5.587 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.215 1.215 24 H -0.168 1.168 25 C -0.082 4.082 26 C 0.005 3.995 27 C -0.050 4.050 28 C -0.170 4.170 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.034 0.966 43 H 0.100 0.900 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.032 0.968 48 H 0.103 0.897 49 H 0.118 0.882 50 H 0.117 0.883 51 H 0.165 0.835 52 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.676 4.410 8.489 15.095 hybrid contribution 0.458 0.432 -2.338 2.422 sum -11.219 4.842 6.151 13.680 Atomic orbital electron populations 1.21871 0.91593 1.02715 1.02955 1.19705 0.97193 0.95582 0.91097 1.21995 1.00910 0.94121 1.03280 1.21900 1.00171 1.00606 0.97006 1.20527 0.92695 0.93872 0.94909 1.21362 1.02053 0.94996 0.98021 1.21086 0.91960 0.99909 0.92053 1.30921 1.15875 1.07509 1.23782 1.01268 0.72072 0.72621 0.73758 1.93524 1.63474 1.54899 1.84773 1.93523 1.84756 1.60075 1.58263 1.57659 1.21001 1.24144 1.80608 1.21792 1.01027 0.81471 0.95188 1.22364 0.90230 0.99745 0.95653 1.62366 1.11630 1.15741 1.34984 1.20073 0.93083 0.96369 0.87230 1.21869 1.08559 1.33472 0.94489 0.94827 1.25866 1.01141 0.96033 0.95427 1.70085 1.41613 1.45867 1.01086 0.85724 0.79579 0.78866 0.78822 1.19348 1.21497 1.16812 1.22317 1.00264 0.89974 0.95635 1.21697 0.83443 0.96905 0.97411 1.21124 0.94836 0.92190 0.96806 1.21600 0.99177 1.01924 0.94339 0.92144 0.90429 0.92099 0.93179 0.90615 0.91142 0.92382 0.90256 0.94812 0.83598 0.83617 0.88324 0.88306 0.96598 0.90007 0.95033 0.94969 0.92737 0.96757 0.89715 0.88220 0.88334 0.83507 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.29 71.98 0.60 -1.57 16 2 C -0.04 -0.74 0.85 -52.93 -0.05 -0.79 16 3 C -0.15 -2.67 7.13 71.98 0.51 -2.16 16 4 C -0.14 -3.26 8.29 71.98 0.60 -2.67 16 5 C -0.02 -0.51 4.76 -19.87 -0.09 -0.60 16 6 C -0.15 -3.86 8.71 22.27 0.19 -3.67 16 7 C -0.03 -0.88 9.52 22.27 0.21 -0.67 16 8 C -0.69 -20.48 5.97 22.27 0.13 -20.34 16 9 S 2.71 79.65 5.70 -56.49 -0.32 79.33 16 10 O -0.98 -31.36 16.05 -128.00 -2.05 -33.41 16 11 O -0.98 -31.17 16.05 -128.00 -2.06 -33.22 16 12 N -1.00 -28.48 3.32 -511.32 -1.70 -30.18 16 13 C 0.13 3.64 6.56 86.50 0.57 4.21 16 14 C 0.05 1.78 5.17 86.54 0.45 2.23 16 15 N -0.52 -19.85 4.83 -898.88 -4.34 -24.19 16 16 C 0.16 7.14 4.18 85.56 0.36 7.49 16 17 C -0.55 -29.48 8.30 25.60 0.21 -29.27 16 18 H 0.03 2.05 6.13 -2.91 -0.02 2.04 16 19 C 0.01 0.75 5.47 84.65 0.46 1.21 16 20 N -0.95 -57.28 13.96 21.45 0.30 -56.98 16 21 Si 0.95 42.43 27.37 68.60 1.88 44.31 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 24 H -0.24 -10.13 6.69 99.48 0.67 -9.46 16 25 C 0.05 1.68 5.24 86.39 0.45 2.13 16 26 C 0.13 3.60 6.53 86.35 0.56 4.17 16 27 C -0.03 -0.86 9.52 22.27 0.21 -0.64 16 28 C -0.15 -4.01 8.98 22.27 0.20 -3.81 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.96 7.39 -2.39 -0.02 0.94 16 32 H 0.05 1.05 7.51 -2.39 -0.02 1.03 16 33 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.07 1.12 7.51 -2.39 -0.02 1.10 16 35 H 0.06 1.34 7.39 -2.39 -0.02 1.32 16 36 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.15 3.21 7.10 -2.91 -0.02 3.19 16 39 H 0.15 3.70 7.62 -2.91 -0.02 3.68 16 40 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.10 2.49 7.21 -2.39 -0.02 2.47 16 42 H 0.02 0.67 6.79 -2.39 -0.02 0.65 16 43 H 0.08 2.79 8.11 -2.38 -0.02 2.77 16 44 H 0.03 1.40 7.47 -2.39 -0.02 1.38 16 45 H 0.03 1.41 7.29 -2.39 -0.02 1.39 16 46 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 47 H 0.01 0.59 6.92 -2.39 -0.02 0.57 16 48 H 0.08 2.80 8.05 -2.39 -0.02 2.78 16 49 H 0.10 2.45 7.22 -2.39 -0.02 2.44 16 50 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 51 H 0.15 3.66 7.61 -2.91 -0.02 3.64 16 52 H 0.15 3.30 5.90 -2.91 -0.02 3.28 16 Total: -1.00 -70.69 410.20 -1.85 -72.54 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.86 Total: 26.54 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 5.58 Total: -44.74 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -5.74 Total: -111.34 kcal Atomic # 8 Polarization: -62.53 SS G_CDS: -4.11 Total: -66.64 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.31 kcal Atomic # 16 Polarization: 79.65 SS G_CDS: -0.32 Total: 79.33 kcal Total: -70.69 -1.85 -72.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020059773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.712 kcal (2) G-P(sol) polarization free energy of solvation -70.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds