Wall clock time and date at job start Tue Mar 31 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99619 * 2 1 4 4 H 1.48504 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47389 * 299.99978 * 3 2 1 6 6 H 1.48495 * 109.47193 * 60.00323 * 3 2 1 7 7 C 1.38810 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00171 * 190.28022 * 7 2 1 9 9 N 1.36934 * 119.99836 * 10.28098 * 7 2 1 10 10 C 1.47084 * 120.88259 * 30.29835 * 9 7 2 11 11 C 1.53237 * 108.52125 * 128.79157 * 10 9 7 12 12 N 1.46891 * 109.34051 * 53.83232 * 11 10 9 13 13 C 1.46903 * 111.00303 * 172.74452 * 12 11 10 14 14 C 1.50701 * 109.46860 * 64.26144 * 13 12 11 15 15 O 1.21287 * 120.00168 * 359.35869 * 14 13 12 16 16 N 1.34782 * 119.99955 * 179.35713 * 14 13 12 17 17 C 1.39918 * 119.99993 * 175.42920 * 16 14 13 18 18 C 1.38901 * 120.06499 * 215.17577 * 17 16 14 19 19 C 1.38104 * 119.94744 * 179.72301 * 18 17 16 20 20 C 1.38291 * 120.07963 * 0.55620 * 19 18 17 21 21 C 1.38350 * 120.12885 * 359.71742 * 20 19 18 22 22 Br 1.89101 * 119.97240 * 180.02562 * 21 20 19 23 23 C 1.38224 * 120.05336 * 0.02562 * 21 20 19 24 24 C 1.46899 * 111.26932 * 296.89434 * 12 11 10 25 25 C 1.47075 * 120.88438 * 210.27520 * 9 7 2 26 26 H 0.96998 * 120.00118 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.62499 * 9.08096 * 10 9 7 28 28 H 1.08997 * 109.78953 * 248.60019 * 10 9 7 29 29 H 1.09000 * 109.49305 * 173.78944 * 11 10 9 30 30 H 1.09002 * 109.49595 * 293.86933 * 11 10 9 31 31 H 1.08994 * 109.47216 * 184.26308 * 13 12 11 32 32 H 1.08993 * 109.47128 * 304.26527 * 13 12 11 33 33 H 0.97003 * 119.99731 * 355.43136 * 16 14 13 34 34 H 1.07996 * 120.02599 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.95653 * 180.25542 * 19 18 17 36 36 H 1.07998 * 119.93233 * 179.74823 * 20 19 18 37 37 H 1.08001 * 120.04200 * 180.02562 * 23 21 20 38 38 H 1.09002 * 109.49489 * 303.14309 * 24 12 11 39 39 H 1.09000 * 109.49404 * 183.06362 * 24 12 11 40 40 H 1.09003 * 109.62729 * 350.92014 * 25 9 7 41 41 H 1.08996 * 109.63229 * 111.49662 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0773 -1.2096 0.1664 9 7 1.3422 -2.3784 -0.2127 10 6 0.1359 -2.4205 -1.0533 11 6 0.3076 -3.5302 -2.0959 12 7 0.6349 -4.7904 -1.4157 13 6 0.6387 -5.9140 -2.3621 14 6 1.7366 -5.7139 -3.3749 15 8 2.4385 -4.7262 -3.3213 16 7 1.9385 -6.6326 -4.3402 17 6 2.8932 -6.4020 -5.3367 18 6 2.6683 -6.8487 -6.6326 19 6 3.6097 -6.6147 -7.6156 20 6 4.7809 -5.9465 -7.3087 21 6 5.0108 -5.5052 -6.0177 22 35 6.6136 -4.5913 -5.6031 23 6 4.0699 -5.7317 -5.0309 24 6 1.9176 -4.6954 -0.7062 25 6 1.8119 -3.6334 0.3934 26 1 -0.4850 0.8400 0.0004 27 1 0.0067 -1.4622 -1.5564 28 1 -0.7372 -2.6303 -0.4355 29 1 -0.6197 -3.6496 -2.6562 30 1 1.1145 -3.2656 -2.7794 31 1 0.8090 -6.8444 -1.8206 32 1 -0.3228 -5.9617 -2.8732 33 1 1.4218 -7.4536 -4.3441 34 1 1.7558 -7.3742 -6.8724 35 1 3.4332 -6.9583 -8.6241 36 1 5.5173 -5.7685 -8.0783 37 1 4.2494 -5.3868 -4.0233 38 1 2.7021 -4.4145 -1.4089 39 1 2.1580 -5.6597 -0.2585 40 1 2.7907 -3.4771 0.8469 41 1 1.1019 -3.9617 1.1525 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020130829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:17 Heat of formation + Delta-G solvation = 43.097073 kcal Electronic energy + Delta-G solvation = -25092.393558 eV Core-core repulsion = 21440.892653 eV Total energy + Delta-G solvation = -3651.500905 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.064 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.87354 -39.12362 -37.29508 -35.03564 -34.14610 -32.37210 -31.42485 -30.35203 -29.81027 -29.33653 -27.86953 -25.15966 -23.28509 -22.68864 -22.51369 -21.97781 -20.55602 -19.16276 -17.91102 -17.20569 -16.66820 -16.40251 -15.74801 -15.08277 -14.97944 -14.47403 -14.33464 -14.21939 -14.17112 -13.68742 -13.50009 -13.19754 -13.15519 -12.91262 -12.17536 -11.88827 -11.83481 -11.63634 -11.30050 -11.20804 -10.93510 -10.71698 -10.52969 -10.41282 -10.36505 -10.21962 -10.04119 -9.88514 -9.70471 -9.54487 -8.98728 -8.44299 -8.40875 -7.70549 -6.50173 -5.68684 -3.14132 0.80288 1.02698 1.46903 2.47614 2.87014 3.40392 3.43367 3.50446 3.53468 4.30970 4.53484 4.57896 4.73705 4.77086 4.85814 5.12790 5.14985 5.20630 5.39558 5.49360 5.51001 5.53616 5.89744 5.98680 5.99808 6.03645 6.07934 6.08978 6.29665 6.42427 6.60035 6.64139 6.69316 6.78762 7.02364 7.12288 7.33400 7.53211 7.70415 7.79958 7.89730 8.06649 8.56148 9.32240 9.93911 10.53838 11.39989 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.010309 B = 0.003181 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.366685 B = 8801.353266 C =10668.493235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.182 3.818 11 C 0.020 3.980 12 N -0.505 5.505 13 C 0.037 3.963 14 C 0.473 3.527 15 O -0.494 6.494 16 N -0.681 5.681 17 C 0.156 3.844 18 C -0.136 4.136 19 C -0.097 4.097 20 C -0.113 4.113 21 C -0.071 4.071 22 Br -0.046 7.046 23 C -0.094 4.094 24 C 0.025 3.975 25 C 0.152 3.848 26 H 0.252 0.748 27 H 0.088 0.912 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.410 0.590 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.150 0.850 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.664 -19.458 -16.038 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.081 0.919 9 N -0.316 5.316 10 C 0.056 3.944 11 C -0.109 4.109 12 N -0.227 5.227 13 C -0.095 4.095 14 C 0.261 3.739 15 O -0.367 6.367 16 N -0.328 5.328 17 C 0.060 3.940 18 C -0.157 4.157 19 C -0.116 4.116 20 C -0.133 4.133 21 C -0.151 4.151 22 Br 0.039 6.961 23 C -0.116 4.116 24 C -0.104 4.104 25 C 0.025 3.975 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.246 0.754 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 7.247 -18.256 -15.356 24.932 hybrid contribution 0.325 0.336 -0.823 0.947 sum 7.572 -17.920 -16.179 25.303 Atomic orbital electron populations 1.69977 1.05173 1.25152 1.54962 1.25116 0.95419 0.98236 1.00848 0.86202 0.79326 0.83987 0.77182 1.20289 1.21654 1.21697 1.19230 0.90777 0.83937 1.43573 0.91860 1.44009 1.30167 1.03250 1.54134 1.20816 0.88327 0.95210 0.90051 1.23142 0.99143 0.90178 0.98450 1.62463 1.31927 1.03994 1.24310 1.22506 0.96175 0.98674 0.92193 1.23119 0.86563 0.82322 0.81940 1.90748 1.46647 1.28142 1.71158 1.44008 1.38997 1.22809 1.26993 1.17733 0.88868 0.98886 0.88501 1.21055 1.00387 1.03179 0.91041 1.20923 0.93131 0.98339 0.99220 1.21082 0.98436 0.99006 0.94804 1.21684 0.94401 1.02791 0.96217 1.96751 1.28846 1.75680 1.94806 1.21309 0.90808 0.98831 1.00629 1.22920 0.90413 0.99096 0.97970 1.20940 0.97569 0.86519 0.92459 0.93778 0.89367 0.95908 0.92879 0.92688 0.88047 0.87909 0.75366 0.85132 0.84829 0.85042 0.83221 0.91847 0.92819 0.92747 0.96028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.15 11.02 55.49 0.61 -26.54 16 2 C 0.00 0.05 5.07 -17.43 -0.09 -0.04 16 3 Si 0.90 22.64 29.57 -169.99 -5.03 17.61 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.25 -7.09 9.63 -15.06 -0.14 -7.24 16 8 H 0.06 1.82 7.85 -52.49 -0.41 1.40 16 9 N -0.59 -15.78 3.03 -172.02 -0.52 -16.31 16 10 C 0.18 4.60 5.36 -3.60 -0.02 4.58 16 11 C 0.02 0.40 5.20 -3.71 -0.02 0.38 16 12 N -0.50 -8.91 4.83 -235.77 -1.14 -10.05 16 13 C 0.04 0.46 5.84 -4.97 -0.03 0.43 16 14 C 0.47 6.37 7.09 -10.98 -0.08 6.29 16 15 O -0.49 -8.99 9.10 5.55 0.05 -8.94 16 16 N -0.68 -6.72 5.34 -9.86 -0.05 -6.78 16 17 C 0.16 1.76 6.29 -83.70 -0.53 1.23 16 18 C -0.14 -1.18 9.97 -39.39 -0.39 -1.57 16 19 C -0.10 -0.80 10.04 -39.61 -0.40 -1.19 16 20 C -0.11 -1.10 9.78 -39.52 -0.39 -1.49 16 21 C -0.07 -0.87 6.22 -39.55 -0.25 -1.11 16 22 Br -0.05 -0.57 33.70 -68.01 -2.29 -2.86 16 23 C -0.09 -1.27 8.43 -39.37 -0.33 -1.60 16 24 C 0.02 0.47 5.13 -3.70 -0.02 0.45 16 25 C 0.15 3.41 6.69 -3.61 -0.02 3.39 16 26 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.09 2.48 6.18 -51.93 -0.32 2.16 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.97 8.06 -51.93 -0.42 0.56 16 30 H 0.05 1.25 5.87 -51.93 -0.31 0.95 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.41 2.41 8.82 -40.82 -0.36 2.05 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.15 2.38 6.25 -52.49 -0.33 2.05 16 38 H 0.06 1.33 5.58 -51.93 -0.29 1.04 16 39 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 40 H 0.05 1.19 7.95 -51.93 -0.41 0.78 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -34.07 348.32 -11.18 -45.25 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.36 Total: 0.86 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -2.70 Total: 2.51 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -1.10 Total: -59.67 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.05 Total: -8.94 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.29 Total: -2.86 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.07 -11.18 -45.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020130829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.346 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds