Wall clock time and date at job start Tue Mar 31 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99619 * 2 1 4 4 H 1.48504 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47389 * 299.99978 * 3 2 1 6 6 H 1.48495 * 109.47193 * 60.00323 * 3 2 1 7 7 C 1.38810 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00171 * 190.28022 * 7 2 1 9 9 N 1.36934 * 119.99836 * 10.28098 * 7 2 1 10 10 C 1.47084 * 120.88259 * 30.29835 * 9 7 2 11 11 C 1.53237 * 108.52125 * 128.79157 * 10 9 7 12 12 N 1.46891 * 109.34051 * 53.83232 * 11 10 9 13 13 C 1.46903 * 111.00303 * 172.74452 * 12 11 10 14 14 C 1.50701 * 109.46860 * 64.26144 * 13 12 11 15 15 O 1.21287 * 120.00168 * 359.35869 * 14 13 12 16 16 N 1.34782 * 119.99955 * 179.35713 * 14 13 12 17 17 C 1.39918 * 119.99993 * 175.42920 * 16 14 13 18 18 C 1.38901 * 120.06499 * 215.17577 * 17 16 14 19 19 C 1.38104 * 119.94744 * 179.72301 * 18 17 16 20 20 C 1.38291 * 120.07963 * 0.55620 * 19 18 17 21 21 C 1.38350 * 120.12885 * 359.71742 * 20 19 18 22 22 Br 1.89101 * 119.97240 * 180.02562 * 21 20 19 23 23 C 1.38224 * 120.05336 * 0.02562 * 21 20 19 24 24 C 1.46899 * 111.26932 * 296.89434 * 12 11 10 25 25 C 1.47075 * 120.88438 * 210.27520 * 9 7 2 26 26 H 0.96998 * 120.00118 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.62499 * 9.08096 * 10 9 7 28 28 H 1.08997 * 109.78953 * 248.60019 * 10 9 7 29 29 H 1.09000 * 109.49305 * 173.78944 * 11 10 9 30 30 H 1.09002 * 109.49595 * 293.86933 * 11 10 9 31 31 H 1.08994 * 109.47216 * 184.26308 * 13 12 11 32 32 H 1.08993 * 109.47128 * 304.26527 * 13 12 11 33 33 H 0.97003 * 119.99731 * 355.43136 * 16 14 13 34 34 H 1.07996 * 120.02599 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.95653 * 180.25542 * 19 18 17 36 36 H 1.07998 * 119.93233 * 179.74823 * 20 19 18 37 37 H 1.08001 * 120.04200 * 180.02562 * 23 21 20 38 38 H 1.09002 * 109.49489 * 303.14309 * 24 12 11 39 39 H 1.09000 * 109.49404 * 183.06362 * 24 12 11 40 40 H 1.09003 * 109.62729 * 350.92014 * 25 9 7 41 41 H 1.08996 * 109.63229 * 111.49662 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0773 -1.2096 0.1664 9 7 1.3422 -2.3784 -0.2127 10 6 0.1359 -2.4205 -1.0533 11 6 0.3076 -3.5302 -2.0959 12 7 0.6349 -4.7904 -1.4157 13 6 0.6387 -5.9140 -2.3621 14 6 1.7366 -5.7139 -3.3749 15 8 2.4385 -4.7262 -3.3213 16 7 1.9385 -6.6326 -4.3402 17 6 2.8932 -6.4020 -5.3367 18 6 2.6683 -6.8487 -6.6326 19 6 3.6097 -6.6147 -7.6156 20 6 4.7809 -5.9465 -7.3087 21 6 5.0108 -5.5052 -6.0177 22 35 6.6136 -4.5913 -5.6031 23 6 4.0699 -5.7317 -5.0309 24 6 1.9176 -4.6954 -0.7062 25 6 1.8119 -3.6334 0.3934 26 1 -0.4850 0.8400 0.0004 27 1 0.0067 -1.4622 -1.5564 28 1 -0.7372 -2.6303 -0.4355 29 1 -0.6197 -3.6496 -2.6562 30 1 1.1145 -3.2656 -2.7794 31 1 0.8090 -6.8444 -1.8206 32 1 -0.3228 -5.9617 -2.8732 33 1 1.4218 -7.4536 -4.3441 34 1 1.7558 -7.3742 -6.8724 35 1 3.4332 -6.9583 -8.6241 36 1 5.5173 -5.7685 -8.0783 37 1 4.2494 -5.3868 -4.0233 38 1 2.7021 -4.4145 -1.4089 39 1 2.1580 -5.6597 -0.2585 40 1 2.7907 -3.4771 0.8469 41 1 1.1019 -3.9617 1.1525 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020130829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:16 Heat of formation + Delta-G solvation = 19.114637 kcal Electronic energy + Delta-G solvation = -25093.433514 eV Core-core repulsion = 21440.892653 eV Total energy + Delta-G solvation = -3652.540861 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.064 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86753 -40.14195 -38.74405 -36.19104 -35.73036 -33.34943 -33.17142 -31.64421 -31.29963 -30.24286 -29.29544 -26.83869 -24.60686 -24.26180 -23.80112 -23.04382 -21.55796 -20.87591 -19.05434 -18.49475 -18.03829 -17.36903 -16.95257 -16.68476 -16.17423 -15.95459 -15.75948 -15.50835 -15.18748 -15.08737 -14.83084 -14.75121 -14.45255 -14.28709 -13.51687 -13.21430 -12.96091 -12.93045 -12.82119 -12.67271 -12.51416 -12.29656 -12.14019 -12.00165 -11.73148 -11.62888 -11.46532 -11.42330 -11.28730 -11.11159 -10.61507 -9.82393 -9.26291 -9.13522 -8.60069 -7.88073 -5.37396 0.02272 0.22224 0.60274 1.41915 1.43058 1.51870 1.54238 2.02978 2.48001 2.63671 2.96875 3.27842 3.70206 3.74114 3.89976 4.08629 4.13355 4.20870 4.28840 4.35954 4.43363 4.47928 4.56753 4.69330 4.70966 4.75160 4.85060 4.91547 5.03918 5.12650 5.21528 5.26540 5.29134 5.34531 5.46724 5.58825 5.72966 5.88059 6.08412 6.09971 6.39162 6.44481 7.14185 7.15850 7.83871 8.38497 9.18070 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.010309 B = 0.003181 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.366685 B = 8801.353266 C =10668.493235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.048 4.048 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.263 4.263 8 H 0.057 0.943 9 N -0.613 5.613 10 C 0.189 3.811 11 C 0.040 3.960 12 N -0.510 5.510 13 C 0.040 3.960 14 C 0.473 3.527 15 O -0.548 6.548 16 N -0.659 5.659 17 C 0.139 3.861 18 C -0.122 4.122 19 C -0.088 4.088 20 C -0.114 4.114 21 C -0.090 4.090 22 Br -0.063 7.063 23 C -0.122 4.122 24 C 0.040 3.960 25 C 0.146 3.854 26 H 0.251 0.749 27 H 0.051 0.949 28 H 0.001 0.999 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.432 0.568 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.149 0.851 37 H 0.115 0.885 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.899 -22.249 -18.178 29.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.394 4.394 8 H 0.075 0.925 9 N -0.337 5.337 10 C 0.063 3.937 11 C -0.089 4.089 12 N -0.232 5.232 13 C -0.092 4.092 14 C 0.261 3.739 15 O -0.425 6.425 16 N -0.308 5.308 17 C 0.043 3.957 18 C -0.143 4.143 19 C -0.107 4.107 20 C -0.134 4.134 21 C -0.170 4.170 22 Br 0.023 6.977 23 C -0.144 4.144 24 C -0.089 4.089 25 C 0.021 3.979 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.019 0.981 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.273 0.727 34 H 0.186 0.814 35 H 0.191 0.809 36 H 0.167 0.833 37 H 0.133 0.867 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 6.475 -21.134 -17.517 28.203 hybrid contribution 0.561 1.082 -0.222 1.239 sum 7.036 -20.053 -17.738 27.681 Atomic orbital electron populations 1.70136 1.06444 1.25690 1.55801 1.25856 0.96282 1.01303 1.00889 0.85201 0.78326 0.79844 0.77069 1.19630 1.21528 1.21130 1.19492 0.90878 0.85455 1.43551 0.92494 1.44272 1.30358 1.03995 1.55092 1.20565 0.87267 0.95424 0.90398 1.22704 0.99488 0.90364 0.96339 1.62320 1.31063 1.03930 1.25896 1.22703 0.97311 0.97526 0.91645 1.23175 0.86195 0.82007 0.82517 1.90766 1.48535 1.30575 1.72587 1.43672 1.38423 1.22895 1.25774 1.17909 0.88403 0.99434 0.89904 1.21467 1.01568 1.01731 0.89515 1.21421 0.91791 0.96613 1.00898 1.21406 0.99648 0.98463 0.93932 1.21807 0.94002 1.03925 0.97288 1.96711 1.29711 1.76213 1.95088 1.21149 0.92798 1.00896 0.99542 1.22656 0.90601 0.99247 0.96408 1.21095 0.97005 0.86097 0.93745 0.94011 0.93103 0.98089 0.90346 0.95071 0.84120 0.84723 0.72741 0.81423 0.80937 0.83340 0.86667 0.94056 0.89157 0.93104 0.96240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 11.02 21.65 0.24 -57.65 16 2 C -0.05 -2.86 5.07 84.86 0.43 -2.43 16 3 Si 0.97 47.85 29.57 68.60 2.03 49.88 16 4 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.26 -15.82 9.63 84.03 0.81 -15.01 16 8 H 0.06 3.40 7.85 -2.91 -0.02 3.38 16 9 N -0.61 -33.91 3.03 -698.15 -2.11 -36.03 16 10 C 0.19 9.95 5.36 86.35 0.46 10.41 16 11 C 0.04 1.66 5.20 86.38 0.45 2.11 16 12 N -0.51 -17.20 4.83 -899.85 -4.35 -21.54 16 13 C 0.04 0.83 5.84 85.56 0.50 1.33 16 14 C 0.47 11.87 7.09 87.66 0.62 12.49 16 15 O -0.55 -20.26 9.10 -3.05 -0.03 -20.29 16 16 N -0.66 -11.15 5.34 -303.51 -1.62 -12.77 16 17 C 0.14 2.86 6.29 38.15 0.24 3.10 16 18 C -0.12 -1.63 9.97 22.40 0.22 -1.40 16 19 C -0.09 -1.09 10.04 22.25 0.22 -0.87 16 20 C -0.11 -2.00 9.78 22.31 0.22 -1.78 16 21 C -0.09 -2.20 6.22 22.29 0.14 -2.07 16 22 Br -0.06 -1.60 33.70 -20.37 -0.69 -2.28 16 23 C -0.12 -3.32 8.43 22.41 0.19 -3.13 16 24 C 0.04 1.48 5.13 86.38 0.44 1.93 16 25 C 0.15 6.70 6.69 86.35 0.58 7.28 16 26 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 27 H 0.05 3.01 6.18 -2.39 -0.01 3.00 16 28 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.08 2.79 8.06 -2.39 -0.02 2.77 16 30 H 0.03 1.46 5.87 -2.39 -0.01 1.44 16 31 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.14 2.05 8.08 -2.39 -0.02 2.03 16 33 H 0.43 3.18 8.82 -92.71 -0.82 2.36 16 34 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.12 3.93 6.25 -2.91 -0.02 3.92 16 38 H 0.04 1.77 5.58 -2.39 -0.01 1.76 16 39 H 0.09 2.68 8.11 -2.39 -0.02 2.66 16 40 H 0.05 2.29 7.95 -2.39 -0.02 2.27 16 41 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -80.48 348.32 -0.76 -81.23 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.24 Total: 7.50 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 5.53 Total: 11.95 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -7.84 Total: -127.99 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.03 Total: -20.29 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Atomic # 35 Polarization: -1.60 SS G_CDS: -0.69 Total: -2.28 kcal Total: -80.48 -0.76 -81.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020130829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.347 kcal (2) G-P(sol) polarization free energy of solvation -80.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds