Wall clock time and date at job start Tue Mar 31 2020 05:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81407 * 102.99999 * 2 1 4 4 C 1.52997 * 109.47050 * 180.02562 * 3 2 1 5 5 O 1.45206 * 109.46891 * 179.97438 * 4 3 2 6 6 C 1.34229 * 116.99724 * 180.02562 * 5 4 3 7 7 O 1.20828 * 120.00266 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99734 * 179.97438 * 6 5 4 9 9 O 1.42905 * 109.46972 * 179.97438 * 8 6 5 10 10 C 1.35691 * 116.99845 * 179.97438 * 9 8 6 11 11 C 1.39200 * 119.87038 * 359.72936 * 10 9 8 12 12 C 1.36599 * 120.12492 * 179.76046 * 11 10 9 13 13 C 1.40259 * 119.86593 * 0.50985 * 12 11 10 14 14 C 1.46744 * 120.12120 * 179.76067 * 13 12 11 15 15 N 1.30694 * 120.00203 * 359.97438 * 14 13 12 16 16 N 1.40101 * 119.99932 * 179.97438 * 15 14 13 17 17 C 1.34776 * 119.99729 * 179.97438 * 16 15 14 18 18 O 1.21974 * 120.00199 * 0.02562 * 17 16 15 19 19 C 1.40687 * 119.99874 * 180.02562 * 17 16 15 20 20 H 1.07993 * 120.00039 * 359.97438 * 19 17 16 21 21 C 1.40200 * 119.99979 * 180.02562 * 19 17 16 22 22 N 1.30610 * 120.00307 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 120.00064 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47044 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47251 * 119.99908 * 23 21 19 26 26 H 1.48506 * 109.47186 * 239.99881 * 23 21 19 27 27 C 1.40255 * 119.75251 * 359.74381 * 13 12 11 28 28 C 1.36591 * 119.86918 * 359.97438 * 27 13 12 29 29 H 1.09002 * 109.46954 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46975 * 299.99936 * 1 2 3 31 31 H 1.08996 * 109.46903 * 60.00181 * 1 2 3 32 32 H 1.09001 * 109.46971 * 59.99657 * 3 2 1 33 33 H 1.09003 * 109.46681 * 299.99879 * 3 2 1 34 34 H 1.09001 * 109.47677 * 59.99888 * 4 3 2 35 35 H 1.09003 * 109.47116 * 299.99412 * 4 3 2 36 36 H 1.09004 * 109.47103 * 59.99845 * 8 6 5 37 37 H 1.09000 * 109.47247 * 299.99723 * 8 6 5 38 38 H 1.08000 * 119.94093 * 0.02562 * 11 10 9 39 39 H 1.08003 * 120.06368 * 180.27588 * 12 11 10 40 40 H 1.08003 * 119.99892 * 179.97438 * 14 13 12 41 41 H 0.96994 * 119.99997 * 0.02562 * 16 15 14 42 42 H 0.96991 * 120.00125 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.06584 * 180.02562 * 27 13 12 44 44 H 1.08000 * 119.93301 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 8 4.0689 3.3548 -0.0013 6 6 5.3713 3.6795 -0.0024 7 8 6.2107 2.8104 -0.0024 8 6 5.7867 5.1282 -0.0037 9 8 7.2131 5.2147 -0.0042 10 6 7.7548 6.4588 -0.0058 11 6 6.9248 7.5763 -0.0127 12 6 7.4645 8.8311 -0.0095 13 6 8.8578 8.9922 -0.0101 14 6 9.4436 10.3377 -0.0120 15 7 8.6667 11.3886 -0.0136 16 7 9.2260 12.6732 -0.0148 17 6 8.4248 13.7569 -0.0171 18 8 7.2128 13.6195 -0.0175 19 6 8.9864 15.0469 -0.0188 20 1 10.0595 15.1686 -0.0180 21 6 8.1530 16.1743 -0.0206 22 7 6.8552 16.0271 -0.0201 23 14 8.8987 17.8870 -0.0223 24 1 10.3800 17.7819 -0.0208 25 1 8.4551 18.6189 -1.2359 26 1 8.4538 18.6218 1.1892 27 6 9.6891 7.8625 -0.0085 28 6 9.1382 6.6126 -0.0059 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8031 2.2372 0.8900 33 1 1.8031 2.2371 -0.8900 34 1 4.1610 1.4705 -0.8908 35 1 4.1616 1.4704 0.8892 36 1 5.3935 5.6197 0.8863 37 1 5.3923 5.6184 -0.8937 38 1 5.8521 7.4510 -0.0163 39 1 6.8196 9.6975 -0.0104 40 1 10.5167 10.4594 -0.0120 41 1 10.1897 12.7825 -0.0149 42 1 6.2787 16.8071 -0.0217 43 1 10.7626 7.9807 -0.0085 44 1 9.7773 5.7420 -0.0043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020248592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:37 Heat of formation + Delta-G solvation = -86.832707 kcal Electronic energy + Delta-G solvation = -27458.704664 eV Core-core repulsion = 23083.466885 eV Total energy + Delta-G solvation = -4375.237779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.113 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12060 -40.09167 -38.04125 -37.48082 -36.93471 -35.05768 -32.71749 -32.63038 -31.62034 -31.17338 -29.83710 -29.52782 -28.43038 -26.47121 -24.26263 -23.46348 -22.78214 -21.47675 -20.63659 -19.69661 -18.80102 -17.87513 -17.59201 -17.54217 -17.25961 -16.64169 -16.21814 -16.20396 -15.69038 -15.36354 -15.09995 -14.97911 -14.41871 -14.32054 -14.04906 -14.01379 -13.90101 -13.38325 -13.38087 -13.06122 -12.97698 -12.81671 -12.70194 -12.60567 -12.49571 -11.89056 -11.73201 -11.42190 -11.23183 -11.18113 -11.04394 -10.77088 -10.71193 -10.68702 -10.66268 -10.36674 -9.53318 -9.08561 -9.06033 -8.51104 -8.36199 -7.79916 -7.18678 -6.43219 -4.98290 0.69719 1.05865 1.46598 1.66910 1.76047 1.92833 2.81200 3.02595 3.09132 3.14165 3.23042 3.69343 3.93560 3.99932 4.06903 4.14251 4.24983 4.41906 4.51437 4.53059 4.53229 4.56005 4.68150 4.82376 4.86860 4.92860 5.02575 5.09061 5.11921 5.32576 5.41390 5.65680 5.73102 5.79960 5.82318 6.08273 6.27573 6.35995 6.58304 6.65883 6.84355 7.16839 7.18013 7.25448 7.80565 7.96089 8.64318 8.73574 9.26250 10.35837 10.60988 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.001188 C = 0.001111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.958074 B =23556.645975 C =25188.550674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.241 6.241 3 C -0.095 4.095 4 C 0.086 3.914 5 O -0.352 6.352 6 C 0.468 3.532 7 O -0.480 6.480 8 C 0.070 3.930 9 O -0.297 6.297 10 C 0.117 3.883 11 C -0.206 4.206 12 C -0.051 4.051 13 C -0.051 4.051 14 C 0.018 3.982 15 N -0.189 5.189 16 N -0.588 5.588 17 C 0.557 3.443 18 O -0.554 6.554 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.088 3.912 22 N -0.744 5.744 23 Si 0.917 3.083 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.068 4.068 28 C -0.144 4.144 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.369 0.631 42 H 0.274 0.726 43 H 0.133 0.867 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.852 -27.612 0.041 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.017 6.017 3 C -0.243 4.243 4 C 0.011 3.989 5 O -0.270 6.270 6 C 0.309 3.691 7 O -0.365 6.365 8 C -0.007 4.007 9 O -0.210 6.210 10 C 0.072 3.928 11 C -0.225 4.225 12 C -0.072 4.072 13 C -0.053 4.053 14 C -0.191 4.191 15 N 0.001 4.999 16 N -0.334 5.334 17 C 0.366 3.634 18 O -0.434 6.434 19 C -0.572 4.572 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.372 5.372 23 Si 0.741 3.259 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.089 4.089 28 C -0.162 4.162 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.159 0.841 40 H 0.124 0.876 41 H 0.205 0.795 42 H 0.085 0.915 43 H 0.151 0.849 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.834 -28.418 0.041 29.478 hybrid contribution 0.734 1.795 0.000 1.939 sum -7.100 -26.623 0.041 27.553 Atomic orbital electron populations 1.23436 0.92939 1.07015 1.05438 1.86958 1.08401 1.08153 1.98162 1.23278 0.97905 0.96128 1.07010 1.22628 0.93498 0.78300 1.04429 1.86401 1.26916 1.29178 1.84532 1.22999 0.80725 0.91875 0.73540 1.90741 1.51989 1.50626 1.43145 1.21848 0.82324 0.90602 1.05903 1.85980 1.18973 1.26714 1.89355 1.19177 0.92917 0.82228 0.98522 1.20967 0.99635 0.92520 1.09343 1.21143 0.94752 0.97067 0.94214 1.18525 0.92931 0.90980 1.02864 1.23885 0.96307 0.90995 1.07909 1.74790 1.29126 0.91741 1.04255 1.48084 1.08609 1.00646 1.76043 1.16810 0.86373 0.81858 0.78381 1.90719 1.13776 1.84956 1.53905 1.19783 0.94657 0.89461 1.53346 0.91031 1.25768 0.94371 1.01010 0.92394 1.70020 1.03933 1.31410 1.31789 0.86164 0.80179 0.81089 0.78514 1.18491 1.19820 1.19826 1.20798 0.99688 0.90494 0.97925 1.19987 0.91335 0.98119 1.06790 0.87546 0.90058 0.90054 0.88515 0.88520 0.89778 0.89773 0.87273 0.87268 0.85380 0.84091 0.87596 0.79524 0.91511 0.84883 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.37 10.76 101.05 1.09 0.71 16 2 S -0.24 -1.44 22.38 -107.50 -2.41 -3.85 16 3 C -0.10 -0.49 6.32 37.16 0.23 -0.25 16 4 C 0.09 0.60 5.47 37.16 0.20 0.80 16 5 O -0.35 -2.83 10.22 -39.26 -0.40 -3.23 16 6 C 0.47 4.55 8.03 36.01 0.29 4.84 16 7 O -0.48 -6.31 16.25 -25.48 -0.41 -6.72 16 8 C 0.07 0.58 5.32 36.01 0.19 0.77 16 9 O -0.30 -3.46 9.66 -38.73 -0.37 -3.84 16 10 C 0.12 1.41 6.71 -38.87 -0.26 1.15 16 11 C -0.21 -2.50 8.97 -39.82 -0.36 -2.85 16 12 C -0.05 -0.77 9.54 -39.41 -0.38 -1.14 16 13 C -0.05 -0.75 5.88 -104.94 -0.62 -1.36 16 14 C 0.02 0.30 10.75 -14.60 -0.16 0.14 16 15 N -0.19 -4.14 10.19 32.13 0.33 -3.81 16 16 N -0.59 -13.84 6.26 28.92 0.18 -13.66 16 17 C 0.56 16.01 7.65 -15.34 -0.12 15.89 16 18 O -0.55 -18.25 15.20 4.94 0.08 -18.17 16 19 C -0.54 -14.64 9.26 -37.92 -0.35 -14.99 16 20 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 21 C 0.09 2.36 5.50 -17.33 -0.10 2.26 16 22 N -0.74 -21.52 11.71 55.56 0.65 -20.87 16 23 Si 0.92 19.09 29.56 -169.99 -5.02 14.06 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.07 -0.80 9.76 -39.42 -0.38 -1.19 16 28 C -0.14 -1.66 9.93 -39.82 -0.40 -2.06 16 29 H 0.11 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.08 0.20 8.14 -51.92 -0.42 -0.23 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.10 0.43 8.14 -51.92 -0.42 0.00 16 33 H 0.10 0.43 8.14 -51.92 -0.42 0.00 16 34 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 36 H 0.11 0.68 7.66 -51.93 -0.40 0.28 16 37 H 0.11 0.68 7.64 -51.93 -0.40 0.28 16 38 H 0.13 1.20 6.27 -52.49 -0.33 0.87 16 39 H 0.14 2.39 7.55 -52.48 -0.40 1.99 16 40 H 0.11 1.47 8.03 -52.48 -0.42 1.04 16 41 H 0.37 7.28 8.61 -182.60 -1.57 5.71 16 42 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 407.59 15.07 6.14 6.14 Total: -1.00 -37.49 407.59 -9.21 -46.71 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.86 Total: 4.50 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.11 Total: 2.72 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 1.16 Total: -38.34 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.11 Total: -31.96 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.41 Total: -3.85 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.49 -9.21 -46.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020248592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.124 kcal (2) G-P(sol) polarization free energy of solvation -37.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds