Wall clock time and date at job start Tue Mar 31 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31655 * 1 3 3 Si 1.86797 * 120.00225 * 2 1 4 4 H 1.48498 * 109.47314 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47057 * 29.99901 * 3 2 1 6 6 H 1.48501 * 109.47044 * 150.00140 * 3 2 1 7 7 C 1.38671 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00043 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.76202 * 100.00163 * 179.97438 * 9 7 2 11 11 N 1.31309 * 125.53027 * 0.04432 * 10 9 7 12 12 N 1.40419 * 106.93369 * 179.74430 * 11 10 9 13 13 H 0.96997 * 126.77724 * 180.22643 * 12 11 10 14 14 C 1.35116 * 106.44797 * 0.35056 * 12 11 10 15 15 N 1.38261 * 126.00107 * 179.90955 * 14 12 11 16 16 N 1.40095 * 120.00318 * 179.71448 * 15 14 12 17 17 C 1.29817 * 119.99899 * 180.02562 * 16 15 14 18 18 C 1.47456 * 119.99892 * 179.97438 * 17 16 15 19 19 C 1.39705 * 120.14528 * 359.72421 * 18 17 16 20 20 C 1.37910 * 119.84656 * 179.81040 * 19 18 17 21 21 C 1.38464 * 120.15006 * 0.44704 * 20 19 18 22 22 Br 1.89100 * 119.85111 * 179.76678 * 21 20 19 23 23 C 1.38463 * 120.29549 * 359.78086 * 21 20 19 24 24 C 1.37906 * 120.15098 * 0.02562 * 23 21 20 25 25 N 1.31591 * 108.00594 * 359.64891 * 14 12 11 26 26 H 0.97002 * 119.99545 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99723 * 359.71492 * 15 14 12 28 28 H 1.07999 * 120.00137 * 359.97438 * 17 16 15 29 29 H 1.08004 * 120.08141 * 0.02562 * 19 18 17 30 30 H 1.08005 * 119.92466 * 180.20489 * 20 19 18 31 31 H 1.08001 * 119.92415 * 179.97438 * 23 21 20 32 32 H 1.08002 * 120.07284 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2506 1.6177 0.0000 4 1 2.4981 2.0464 -1.4000 5 1 1.4481 2.6526 0.7000 6 1 3.5482 1.4400 0.7000 7 6 2.0099 -1.2010 -0.0005 8 1 3.0899 -1.2010 -0.0010 9 16 1.1289 -2.7268 -0.0005 10 6 2.4786 -3.8595 -0.0021 11 7 3.7501 -3.5314 -0.0021 12 7 4.4817 -4.7300 0.0024 13 1 5.4474 -4.8208 0.0066 14 6 3.5750 -5.7317 -0.0030 15 7 3.8589 -7.0849 -0.0029 16 7 2.8153 -8.0196 -0.0028 17 6 3.0820 -9.2901 -0.0023 18 6 1.9836 -10.2739 -0.0016 19 6 0.6550 -9.8421 0.0041 20 6 -0.3675 -10.7676 0.0007 21 6 -0.0796 -12.1220 0.0009 22 35 -1.4882 -13.3836 0.0029 23 6 1.2350 -12.5567 0.0000 24 6 2.2670 -11.6419 -0.0006 25 7 2.3742 -5.1935 -0.0026 26 1 -0.4849 0.8401 0.0004 27 1 4.7806 -7.3870 -0.0028 28 1 4.1082 -9.6265 -0.0022 29 1 0.4290 -8.7860 0.0077 30 1 -1.3951 -10.4352 0.0018 31 1 1.4527 -13.6145 0.0006 32 1 3.2920 -11.9823 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020457354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:08 Heat of formation + Delta-G solvation = 163.168832 kcal Electronic energy + Delta-G solvation = -19854.503943 eV Core-core repulsion = 16411.589174 eV Total energy + Delta-G solvation = -3442.914769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 366.980 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.15872 -39.63124 -37.39150 -33.87971 -32.58452 -32.11255 -31.65134 -31.40047 -29.80421 -28.30312 -25.56444 -24.04900 -23.10389 -22.49006 -21.26907 -20.46222 -18.74718 -17.63555 -17.24700 -16.91683 -15.77973 -15.41482 -15.29179 -15.08141 -14.87225 -14.67808 -13.91109 -13.87335 -13.81493 -13.09239 -12.94179 -11.81504 -11.69049 -11.49089 -11.40911 -11.11293 -11.05130 -10.93882 -10.61402 -10.51783 -10.42456 -10.12454 -9.89648 -9.42512 -9.38399 -9.14334 -8.92650 -8.60754 -7.93080 -6.67932 -6.36788 -4.09349 0.29010 0.99643 1.28846 1.80439 1.87331 2.47858 2.86087 3.21579 3.25948 3.33101 3.41515 3.68169 3.68217 4.13138 4.19883 4.33058 4.55640 4.62949 4.93680 5.00728 5.05375 5.09965 5.28399 5.32862 5.63813 5.80464 5.88231 5.93082 6.10354 6.20358 6.43323 6.60699 7.10763 7.61457 7.66750 7.79660 8.39559 8.79939 9.13660 10.71018 Molecular weight = 366.98amu Principal moments of inertia in cm(-1) A = 0.019070 B = 0.001645 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.901715 B =17016.021441 C =18474.079354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.076 3.924 3 Si 0.929 3.071 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.096 0.904 9 S 0.162 5.838 10 C 0.219 3.781 11 N -0.321 5.321 12 N -0.521 5.521 13 H 0.426 0.574 14 C 0.526 3.474 15 N -0.547 5.547 16 N -0.174 5.174 17 C 0.069 3.931 18 C -0.024 4.024 19 C -0.075 4.075 20 C -0.091 4.091 21 C -0.083 4.083 22 Br -0.054 7.054 23 C -0.096 4.096 24 C -0.092 4.092 25 N -0.529 5.529 26 H 0.273 0.727 27 H 0.396 0.604 28 H 0.121 0.879 29 H 0.150 0.850 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.028 -30.023 0.015 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.133 4.133 3 Si 0.754 3.246 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.693 4.693 8 H 0.114 0.886 9 S 0.391 5.609 10 C -0.167 4.167 11 N -0.158 5.158 12 N -0.245 5.245 13 H 0.269 0.731 14 C 0.157 3.843 15 N -0.280 5.280 16 N 0.020 4.980 17 C -0.143 4.143 18 C -0.026 4.026 19 C -0.096 4.096 20 C -0.111 4.111 21 C -0.164 4.164 22 Br 0.032 6.968 23 C -0.116 4.116 24 C -0.113 4.113 25 N -0.267 5.267 26 H 0.083 0.917 27 H 0.236 0.764 28 H 0.138 0.862 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.298 -29.123 0.020 29.152 hybrid contribution 4.218 0.485 -0.011 4.246 sum 5.516 -28.637 0.010 29.164 Atomic orbital electron populations 1.69967 1.05984 1.28215 1.46746 1.25033 0.95117 0.99429 0.93765 0.85997 0.79498 0.80554 0.78521 1.20082 1.20689 1.19375 1.23204 0.97026 0.90500 1.58610 0.88569 1.83789 0.97432 0.93275 1.86416 1.27382 0.97775 0.93776 0.97778 1.78693 1.04125 0.98500 1.34489 1.47906 1.08924 1.03299 1.64402 0.73068 1.19731 0.87124 0.81237 0.96205 1.43662 1.05000 0.99454 1.79907 1.74821 1.14692 1.00485 1.07995 1.24170 0.97921 0.90082 1.02114 1.18407 0.91860 0.91562 1.00814 1.21607 0.91001 1.01201 0.95835 1.21163 1.00667 0.90681 0.98598 1.21960 0.93009 0.93758 1.07661 1.96740 1.46146 1.56336 1.97620 1.20961 0.90505 1.00325 0.99791 1.21159 0.99481 0.91217 0.99465 1.70896 1.18811 1.06523 1.30480 0.91714 0.76360 0.86159 0.83226 0.84440 0.84728 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.06 13.22 55.48 0.73 -24.33 16 2 C 0.08 2.11 5.49 -17.47 -0.10 2.01 16 3 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.52 9.36 30.89 0.29 -15.23 16 8 H 0.10 2.76 6.87 -52.48 -0.36 2.40 16 9 S 0.16 4.36 21.89 -107.50 -2.35 2.00 16 10 C 0.22 5.41 8.20 -90.81 -0.74 4.66 16 11 N -0.32 -7.47 11.51 30.16 0.35 -7.12 16 12 N -0.52 -9.00 7.47 30.05 0.22 -8.78 16 13 H 0.43 5.24 8.96 -182.36 -1.63 3.61 16 14 C 0.53 9.33 9.12 -320.70 -2.92 6.41 16 15 N -0.55 -6.96 6.42 30.05 0.19 -6.77 16 16 N -0.17 -2.24 10.44 32.16 0.34 -1.90 16 17 C 0.07 0.61 10.75 -14.65 -0.16 0.45 16 18 C -0.02 -0.20 5.87 -105.05 -0.62 -0.82 16 19 C -0.08 -0.76 9.58 -39.15 -0.37 -1.13 16 20 C -0.09 -0.83 9.77 -39.62 -0.39 -1.21 16 21 C -0.08 -0.70 6.23 -39.42 -0.25 -0.94 16 22 Br -0.05 -0.43 33.69 -68.01 -2.29 -2.72 16 23 C -0.10 -0.66 9.77 -39.62 -0.39 -1.05 16 24 C -0.09 -0.59 9.79 -39.16 -0.38 -0.98 16 25 N -0.53 -11.81 11.12 -14.12 -0.16 -11.96 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.40 3.21 8.77 -182.60 -1.60 1.61 16 28 H 0.12 0.61 8.02 -52.49 -0.42 0.19 16 29 H 0.15 1.73 7.55 -52.48 -0.40 1.33 16 30 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 32 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -34.61 333.22 -13.82 -48.42 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.82 Total: -0.42 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -6.03 Total: -7.84 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 1.68 Total: -60.86 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -2.35 Total: 2.00 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.29 Total: -2.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.61 -13.82 -48.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020457354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.591 kcal (2) G-P(sol) polarization free energy of solvation -34.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds