Wall clock time and date at job start Tue Mar 31 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38918 * 118.76424 * 2 1 4 4 C 1.36910 * 120.53547 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.93252 * 179.97438 * 4 3 2 6 6 C 1.39957 * 118.14332 * 359.95559 * 4 3 2 7 7 C 1.46680 * 118.72406 * 0.02562 * 6 4 3 8 8 N 1.32405 * 107.09792 * 179.97438 * 7 6 4 9 9 N 1.40059 * 109.82663 * 359.75364 * 8 7 6 10 10 C 1.36421 * 109.51003 * 0.42489 * 9 8 7 11 11 N 1.33298 * 120.88407 * 179.80778 * 10 9 8 12 12 C 1.31767 * 121.42435 * 359.72341 * 11 10 9 13 13 C 1.50704 * 119.95225 * 179.97438 * 12 11 10 14 14 C 1.39167 * 120.09815 * 0.02562 * 12 11 10 15 15 C 1.36859 * 130.95458 * 179.59111 * 9 8 7 16 16 N 1.37881 * 120.48561 * 0.65070 * 15 9 8 17 17 C 1.46902 * 111.00148 * 179.72329 * 16 15 9 18 18 C 1.53240 * 109.33921 * 187.25406 * 17 16 15 19 19 N 1.47078 * 108.52213 * 306.17190 * 18 17 16 20 20 C 1.36927 * 120.88018 * 231.18526 * 19 18 17 21 21 H 1.08000 * 120.00012 * 28.66836 * 20 19 18 22 22 C 1.38818 * 120.00183 * 208.66585 * 20 19 18 23 23 N 1.31621 * 120.00201 * 199.00669 * 22 20 19 24 24 Si 1.86797 * 119.99552 * 19.01184 * 22 20 19 25 25 H 1.48498 * 109.47237 * 273.07025 * 24 22 20 26 26 H 1.48492 * 109.47354 * 33.07495 * 24 22 20 27 27 H 1.48500 * 109.46807 * 153.07250 * 24 22 20 28 28 C 1.47080 * 118.23701 * 51.45901 * 19 18 17 29 29 C 1.46893 * 111.00034 * 304.02994 * 16 15 9 30 30 N 1.31147 * 118.76469 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47069 * 270.02616 * 1 2 3 32 32 H 1.09000 * 109.47211 * 30.02348 * 1 2 3 33 33 H 1.08999 * 109.46775 * 150.02451 * 1 2 3 34 34 H 1.08004 * 119.73702 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.47323 * 269.95595 * 5 4 3 36 36 H 1.09012 * 109.46756 * 29.95120 * 5 4 3 37 37 H 1.08999 * 109.47357 * 149.94771 * 5 4 3 38 38 H 1.08996 * 109.46948 * 270.01783 * 13 12 11 39 39 H 1.09001 * 109.47152 * 30.02106 * 13 12 11 40 40 H 1.09001 * 109.46900 * 150.01645 * 13 12 11 41 41 H 1.07990 * 120.49011 * 179.97438 * 14 12 11 42 42 H 1.08997 * 109.49274 * 67.29476 * 17 16 15 43 43 H 1.08998 * 109.48928 * 307.21556 * 17 16 15 44 44 H 1.08996 * 109.62694 * 186.45836 * 18 17 16 45 45 H 1.09003 * 109.62371 * 65.88114 * 18 17 16 46 46 H 0.96995 * 119.99756 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.63019 * 68.24874 * 28 19 18 48 48 H 1.08994 * 109.62634 * 188.83060 * 28 19 18 49 49 H 1.09007 * 109.49327 * 292.70091 * 29 16 15 50 50 H 1.09000 * 109.49806 * 52.78189 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1756 1.2178 0.0000 4 6 3.5440 1.2601 -0.0005 5 6 4.2783 2.5761 -0.0011 6 6 4.2420 0.0470 -0.0001 7 6 3.4786 -1.2055 0.0003 8 7 4.3566 -2.1966 0.0001 9 7 5.6578 -1.6784 -0.0061 10 6 5.6054 -0.3152 -0.0004 11 7 6.7223 0.4125 -0.0008 12 6 7.9117 -0.1545 -0.0012 13 6 9.1528 0.7003 -0.0022 14 6 8.0235 -1.5417 -0.0018 15 6 6.8737 -2.3067 -0.0012 16 7 6.9496 -3.6834 -0.0016 17 6 8.3479 -4.1336 -0.0025 18 6 8.3913 -5.6544 -0.1854 19 7 7.5394 -6.2731 0.8416 20 6 8.0150 -7.2835 1.6338 21 1 9.0691 -7.3400 1.8624 22 6 7.1424 -8.2354 2.1433 23 7 7.4982 -8.9678 3.1775 24 14 5.4634 -8.4768 1.3610 25 1 4.4939 -7.5296 1.9676 26 1 5.5565 -8.2228 -0.0990 27 1 5.0052 -9.8702 1.5928 28 6 6.1612 -5.7817 0.9909 29 6 6.2074 -4.2519 1.1315 30 7 2.1382 -1.1496 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6113 2.1387 0.0004 35 1 4.4557 2.8927 -1.0289 36 1 3.6779 3.3274 0.5121 37 1 5.2323 2.4601 0.5132 38 1 9.4512 0.9063 -1.0300 39 1 8.9475 1.6394 0.5117 40 1 9.9572 0.1735 0.5112 41 1 8.9951 -2.0131 -0.0025 42 1 8.8162 -3.8678 0.9452 43 1 8.8841 -3.6533 -0.8209 44 1 9.4163 -6.0077 -0.0725 45 1 8.0184 -5.9148 -1.1760 46 1 6.8883 -9.6326 3.5337 47 1 5.5780 -6.0541 0.1112 48 1 5.7111 -6.2192 1.8819 49 1 6.7055 -3.9844 2.0635 50 1 5.1913 -3.8574 1.1355 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020590236.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:30 Heat of formation + Delta-G solvation = 195.263435 kcal Electronic energy + Delta-G solvation = -33509.034253 eV Core-core repulsion = 29346.836820 eV Total energy + Delta-G solvation = -4162.197433 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.186 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.63020 -40.18946 -38.88580 -37.46056 -35.60151 -34.36877 -33.02809 -32.15005 -31.41226 -31.08859 -30.35035 -28.24508 -28.15510 -27.50836 -27.04729 -24.38307 -23.35096 -22.99640 -22.53726 -21.88721 -20.60647 -19.81341 -18.40609 -18.34861 -17.25106 -16.87893 -16.48415 -16.17240 -15.96635 -15.15059 -14.99282 -14.85981 -14.55190 -14.45887 -14.30773 -14.19092 -13.94417 -13.49437 -13.38821 -13.23867 -12.90467 -12.84381 -12.73405 -12.69195 -12.52170 -12.45271 -12.23579 -12.08890 -12.03083 -11.74449 -11.32207 -11.23122 -10.97791 -10.89422 -10.55031 -10.33249 -10.21701 -10.11975 -9.98890 -9.61326 -9.15233 -9.07897 -8.79008 -8.68740 -7.51099 -7.17013 -6.07458 -3.48524 0.01890 0.28667 1.43756 1.59453 1.79929 3.02057 3.21302 3.27206 3.39834 3.44186 3.47040 3.71081 3.78521 4.17025 4.34538 4.42504 4.47171 4.64970 4.67451 4.72386 4.87939 4.98352 5.00773 5.13569 5.16130 5.21666 5.26413 5.28232 5.30516 5.35067 5.40862 5.42958 5.44221 5.49160 5.50234 5.57402 5.62519 5.70807 5.74365 5.88883 5.95223 6.02211 6.04674 6.23925 6.27362 6.40038 6.43473 6.47550 6.58655 6.73618 6.77720 7.37025 7.42987 7.76966 8.04377 8.18585 8.74772 9.56021 9.91617 11.07797 Molecular weight = 366.19amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.003207 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.715939 B = 8729.879667 C =11064.939592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.226 3.774 3 C -0.255 4.255 4 C 0.078 3.922 5 C -0.121 4.121 6 C -0.270 4.270 7 C 0.324 3.676 8 N -0.315 5.315 9 N -0.279 5.279 10 C 0.346 3.654 11 N -0.497 5.497 12 C 0.228 3.772 13 C -0.105 4.105 14 C -0.282 4.282 15 C 0.407 3.593 16 N -0.466 5.466 17 C 0.035 3.965 18 C 0.150 3.850 19 N -0.608 5.608 20 C -0.269 4.269 21 H 0.089 0.911 22 C 0.029 3.971 23 N -0.904 5.904 24 Si 0.881 3.119 25 H -0.284 1.284 26 H -0.270 1.270 27 H -0.300 1.300 28 C 0.130 3.870 29 C 0.038 3.962 30 N -0.496 5.496 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.176 0.824 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.036 0.964 46 H 0.265 0.735 47 H 0.040 0.960 48 H 0.088 0.912 49 H 0.057 0.943 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 25.218 -7.223 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.068 3.932 3 C -0.278 4.278 4 C 0.068 3.932 5 C -0.177 4.177 6 C -0.283 4.283 7 C 0.064 3.936 8 N -0.148 5.148 9 N -0.048 5.048 10 C 0.105 3.895 11 N -0.214 5.214 12 C 0.074 3.926 13 C -0.162 4.162 14 C -0.310 4.310 15 C 0.185 3.815 16 N -0.178 5.178 17 C -0.092 4.092 18 C 0.023 3.977 19 N -0.332 5.332 20 C -0.397 4.397 21 H 0.106 0.894 22 C -0.171 4.171 23 N -0.546 5.546 24 Si 0.711 3.289 25 H -0.211 1.211 26 H -0.196 1.196 27 H -0.228 1.228 28 C 0.004 3.996 29 C -0.088 4.088 30 N -0.213 5.213 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.153 0.847 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.193 0.807 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.106 0.894 49 H 0.075 0.925 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.475 23.421 -7.500 24.716 hybrid contribution -0.265 0.549 0.040 0.611 sum -2.740 23.970 -7.460 25.253 Atomic orbital electron populations 1.20830 0.88443 1.03723 1.03476 1.21340 0.96756 0.87519 0.87550 1.21072 0.93627 0.98883 1.14200 1.19293 0.93027 0.92994 0.87874 1.20910 1.00959 0.92760 1.03072 1.19238 0.88944 0.96680 1.23481 1.21331 0.90629 0.88726 0.92899 1.78399 0.82482 1.13973 1.39939 1.47163 1.06196 1.06844 1.44552 1.20099 0.93845 0.79782 0.95780 1.67865 0.96009 1.36158 1.21385 1.21693 0.93233 0.91378 0.86306 1.20824 0.91719 0.99536 1.04166 1.21977 0.97888 0.94139 1.16973 1.19598 0.81640 0.90312 0.89932 1.57869 1.17145 1.00868 1.41915 1.23210 0.83478 1.00619 1.01941 1.21070 0.96612 0.87567 0.92453 1.44489 1.09342 1.40764 1.38573 1.18870 0.95584 1.02090 1.23149 0.89355 1.25309 0.98155 0.96364 0.97306 1.69800 1.37237 1.25213 1.22358 0.87039 0.84812 0.76240 0.80815 1.21099 1.19551 1.22755 1.21652 0.87893 0.89071 1.00991 1.23243 0.98729 0.99196 0.87588 1.67460 1.04260 1.28077 1.21454 0.89827 0.90282 0.90121 0.84694 0.90286 0.90983 0.89967 0.89002 0.89522 0.89395 0.80716 0.91650 0.89528 0.90094 0.94581 0.92488 0.94167 0.89388 0.92464 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.12 36.01 0.36 -0.57 16 2 C 0.23 2.95 6.76 -82.63 -0.56 2.40 16 3 C -0.26 -2.91 9.27 -39.81 -0.37 -3.28 16 4 C 0.08 1.00 5.91 -104.46 -0.62 0.38 16 5 C -0.12 -1.13 10.01 36.00 0.36 -0.77 16 6 C -0.27 -4.38 6.17 -104.77 -0.65 -5.02 16 7 C 0.32 6.02 8.57 -156.47 -1.34 4.68 16 8 N -0.32 -6.22 10.46 31.87 0.33 -5.89 16 9 N -0.28 -4.83 3.70 -11.07 -0.04 -4.87 16 10 C 0.35 5.51 7.77 -155.96 -1.21 4.29 16 11 N -0.50 -6.54 9.68 -8.38 -0.08 -6.63 16 12 C 0.23 2.40 6.82 -82.27 -0.56 1.83 16 13 C -0.11 -0.61 10.19 36.01 0.37 -0.24 16 14 C -0.28 -3.17 8.52 -39.28 -0.33 -3.51 16 15 C 0.41 6.22 6.48 -152.52 -0.99 5.23 16 16 N -0.47 -7.75 4.67 -172.00 -0.80 -8.55 16 17 C 0.03 0.49 4.29 -3.70 -0.02 0.47 16 18 C 0.15 2.65 6.69 -3.60 -0.02 2.62 16 19 N -0.61 -13.79 2.79 -171.73 -0.48 -14.27 16 20 C -0.27 -7.19 10.07 -15.06 -0.15 -7.34 16 21 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 22 C 0.03 0.81 5.26 -17.43 -0.09 0.72 16 23 N -0.90 -27.09 13.97 55.49 0.78 -26.31 16 24 Si 0.88 22.37 24.30 -169.99 -4.13 18.24 16 25 H -0.28 -7.01 6.40 56.52 0.36 -6.65 16 26 H -0.27 -6.86 6.86 56.52 0.39 -6.47 16 27 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 28 C 0.13 2.87 4.38 -3.36 -0.01 2.86 16 29 C 0.04 0.72 5.47 -3.46 -0.02 0.70 16 30 N -0.50 -8.55 10.35 -7.73 -0.08 -8.63 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.47 8.06 -51.93 -0.42 0.05 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.51 8.10 -51.92 -0.42 0.09 16 37 H 0.08 0.84 7.33 -51.93 -0.38 0.46 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.35 8.09 -51.93 -0.42 -0.07 16 41 H 0.18 1.43 5.84 -52.49 -0.31 1.13 16 42 H 0.07 0.89 7.81 -51.93 -0.41 0.48 16 43 H 0.09 0.91 6.88 -51.93 -0.36 0.56 16 44 H 0.08 1.34 7.95 -51.93 -0.41 0.92 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.04 0.93 7.04 -51.93 -0.37 0.56 16 48 H 0.09 2.11 4.63 -51.93 -0.24 1.87 16 49 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 50 H 0.10 2.00 5.80 -51.93 -0.30 1.70 16 LS Contribution 391.98 15.07 5.91 5.91 Total: -1.00 -35.12 391.98 -11.48 -46.60 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.02 Total: -1.05 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -5.85 Total: 5.45 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -0.38 Total: -75.15 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.13 Total: 18.24 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.12 -11.48 -46.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020590236.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.860 kcal (2) G-P(sol) polarization free energy of solvation -35.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 206.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds