Wall clock time and date at job start Tue Mar 31 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35877 * 117.00207 * 2 1 4 4 C 1.36714 * 120.25602 * 359.97438 * 3 2 1 5 5 C 1.39202 * 121.01504 * 180.02562 * 4 3 2 6 6 C 1.36300 * 121.02399 * 359.93115 * 5 4 3 7 7 C 1.40239 * 119.61050 * 0.08671 * 6 5 4 8 8 C 1.40762 * 122.03749 * 179.97438 * 7 6 5 9 9 C 1.50693 * 120.77068 * 359.95226 * 8 7 6 10 10 N 1.31638 * 118.46166 * 179.97438 * 8 7 6 11 11 C 1.33139 * 121.56083 * 359.97438 * 10 8 7 12 12 N 1.38755 * 118.67680 * 180.02562 * 11 10 8 13 13 C 1.36968 * 119.99665 * 0.27485 * 12 11 10 14 14 N 1.31918 * 118.70568 * 359.45347 * 13 12 11 15 15 C 1.32276 * 122.34239 * 179.74692 * 14 13 12 16 16 C 1.50698 * 120.24875 * 180.28749 * 15 14 13 17 17 C 1.40681 * 119.50207 * 0.49587 * 15 14 13 18 18 C 1.40629 * 121.15322 * 179.74526 * 17 15 14 19 19 H 1.07994 * 120.00302 * 324.53282 * 18 17 15 20 20 C 1.39895 * 119.99312 * 144.52476 * 18 17 15 21 21 N 1.30958 * 120.00713 * 339.39458 * 20 18 17 22 22 Si 1.86807 * 119.99515 * 159.39371 * 20 18 17 23 23 H 1.48498 * 109.46867 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47131 * 119.99881 * 22 20 18 25 25 H 1.48491 * 109.47043 * 240.00170 * 22 20 18 26 26 C 1.47437 * 117.69140 * 359.77502 * 17 15 14 27 27 O 1.21767 * 121.09256 * 180.02562 * 26 17 15 28 28 N 1.35157 * 117.81330 * 359.97438 * 26 17 15 29 29 H 0.97003 * 119.97090 * 180.02562 * 28 26 17 30 30 N 1.31802 * 122.64939 * 0.27938 * 11 10 8 31 31 C 1.33818 * 120.20965 * 359.45063 * 30 11 10 32 32 H 1.08999 * 109.46922 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46911 * 300.00219 * 1 2 3 34 34 H 1.08994 * 109.46835 * 60.00314 * 1 2 3 35 35 H 1.08002 * 119.49331 * 0.02562 * 4 3 2 36 36 H 1.08001 * 119.48910 * 179.97438 * 5 4 3 37 37 H 1.07998 * 120.19437 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.47529 * 270.02913 * 9 8 7 39 39 H 1.09007 * 109.46984 * 30.02556 * 9 8 7 40 40 H 1.08995 * 109.47359 * 150.02930 * 9 8 7 41 41 H 0.96998 * 120.00006 * 180.02562 * 12 11 10 42 42 H 1.09001 * 109.47784 * 270.20933 * 16 15 14 43 43 H 1.08999 * 109.46848 * 30.21510 * 16 15 14 44 44 H 1.09010 * 109.46953 * 150.20643 * 16 15 14 45 45 H 0.96994 * 120.00470 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.3065 2.3606 -0.0005 5 6 1.9220 3.6091 -0.0011 6 6 3.2803 3.7227 0.0003 7 6 4.0724 2.5655 0.0005 8 6 5.4789 2.6233 0.0013 9 6 6.1960 3.9486 0.0011 10 7 6.1532 1.4927 0.0019 11 6 5.5359 0.3131 0.0023 12 7 6.3058 -0.8413 0.0035 13 6 7.6726 -0.7528 0.0100 14 7 8.2302 0.4427 0.0040 15 6 9.5421 0.6117 0.0145 16 6 10.1287 1.9998 0.0135 17 6 10.3856 -0.5141 0.0222 18 6 11.7849 -0.3747 0.0282 19 1 12.2493 0.4349 -0.5151 20 6 12.5754 -1.2848 0.7380 21 7 12.0476 -1.9994 1.7002 22 14 14.3840 -1.4808 0.3134 23 1 14.7323 -0.5653 -0.8028 24 1 15.2103 -1.1485 1.5016 25 1 14.6471 -2.8837 -0.0959 26 6 9.7516 -1.8452 0.0232 27 8 10.4227 -2.8613 0.0301 28 7 8.4012 -1.9006 0.0171 29 1 7.9515 -2.7600 0.0179 30 7 4.2230 0.1976 -0.0034 31 6 3.4509 1.2906 0.0013 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 0.2282 2.2994 -0.0005 36 1 1.3139 4.5016 -0.0019 37 1 3.7438 4.6982 0.0003 38 1 6.3691 4.2679 -1.0266 39 1 5.5859 4.6919 0.5145 40 1 7.1515 3.8449 0.5151 41 1 5.8760 -1.7108 0.0033 42 1 10.2755 2.3316 -1.0143 43 1 9.4477 2.6824 0.5219 44 1 11.0872 1.9896 0.5325 45 1 12.5956 -2.6306 2.1922 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020673251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:16 Heat of formation + Delta-G solvation = 69.774142 kcal Electronic energy + Delta-G solvation = -32593.418864 eV Core-core repulsion = 28192.228050 eV Total energy + Delta-G solvation = -4401.190813 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.32864 -39.88278 -39.21321 -37.33818 -36.22393 -35.07369 -34.44567 -33.66964 -32.59737 -30.82278 -30.00344 -29.49052 -28.39662 -27.63605 -27.40567 -25.02378 -23.62799 -23.56626 -21.71870 -21.54525 -20.82157 -18.78477 -18.55370 -18.18601 -17.17059 -16.70214 -16.49365 -16.06354 -15.99048 -15.87632 -15.23771 -15.17790 -14.95044 -14.72182 -14.28069 -13.99289 -13.60618 -13.21998 -13.12938 -13.06014 -12.80308 -12.74977 -12.26556 -12.21570 -12.02680 -11.88591 -11.72024 -11.52131 -11.49531 -11.25204 -11.23117 -11.20849 -10.73047 -10.56905 -10.36740 -10.24277 -9.86096 -9.40663 -9.02602 -8.83689 -8.63495 -8.58941 -7.95849 -7.60532 -7.07142 -6.61505 -4.17510 0.49283 0.91197 2.01125 2.32226 2.81055 3.03046 3.07529 3.09082 3.12103 3.17672 3.60672 3.88688 4.16717 4.27709 4.31265 4.54732 4.60857 4.72463 4.77567 4.82662 4.93580 4.94857 5.12514 5.27523 5.29596 5.43436 5.45675 5.66619 5.68658 5.76501 5.84023 6.01917 6.04902 6.11338 6.33879 6.36440 6.59552 6.72491 6.80581 6.82318 6.89578 6.97416 7.06489 7.18535 7.46225 7.50197 7.62640 7.92048 8.00018 8.26735 8.54151 8.60543 8.69878 9.44735 9.73689 10.03927 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.019492 B = 0.002410 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.177830 B =11613.901646 C =12897.080215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.295 6.295 3 C 0.131 3.869 4 C -0.187 4.187 5 C -0.115 4.115 6 C -0.094 4.094 7 C -0.179 4.179 8 C 0.238 3.762 9 C -0.105 4.105 10 N -0.461 5.461 11 C 0.568 3.432 12 N -0.599 5.599 13 C 0.398 3.602 14 N -0.424 5.424 15 C -0.071 4.071 16 C -0.044 4.044 17 C -0.007 4.007 18 C -0.396 4.396 19 H 0.095 0.905 20 C 0.075 3.925 21 N -0.736 5.736 22 Si 0.913 3.087 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.270 1.270 26 C 0.530 3.470 27 O -0.532 6.532 28 N -0.642 5.642 29 H 0.385 0.615 30 N -0.561 5.561 31 C 0.193 3.807 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.420 0.580 42 H 0.037 0.963 43 H 0.045 0.955 44 H 0.059 0.941 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.145 10.154 -1.850 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.208 6.208 3 C 0.083 3.917 4 C -0.209 4.209 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.186 4.186 8 C 0.073 3.927 9 C -0.162 4.162 10 N -0.178 5.178 11 C 0.211 3.789 12 N -0.231 5.231 13 C 0.052 3.948 14 N -0.146 5.146 15 C -0.196 4.196 16 C -0.102 4.102 17 C -0.017 4.017 18 C -0.425 4.425 19 H 0.113 0.887 20 C -0.151 4.151 21 N -0.356 5.356 22 Si 0.737 3.263 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.195 1.195 26 C 0.324 3.676 27 O -0.408 6.408 28 N -0.291 5.291 29 H 0.220 0.780 30 N -0.286 5.286 31 C 0.061 3.939 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.257 0.743 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.130 9.101 -1.660 19.469 hybrid contribution -0.180 -1.173 -0.119 1.193 sum -17.310 7.928 -1.779 19.122 Atomic orbital electron populations 1.23085 0.78925 1.03953 1.01091 1.86214 1.20533 1.26016 1.87988 1.18258 0.89579 0.85000 0.98815 1.20852 0.99992 0.92040 1.08030 1.20468 0.94627 0.96608 1.01663 1.20768 0.93434 0.97143 1.00126 1.19052 0.95671 0.94227 1.09636 1.22137 0.88335 0.95134 0.87056 1.20789 1.01387 0.90230 1.03796 1.68478 1.38338 0.96305 1.14667 1.18897 0.84214 0.85845 0.89911 1.40275 1.02268 1.05906 1.74640 1.17558 0.81424 0.83310 1.12496 1.67028 1.14109 1.16588 1.16855 1.20349 0.85958 0.94643 1.18609 1.19900 0.99033 0.91921 0.99341 1.20186 0.94881 0.88671 0.97940 1.19286 0.90243 1.09693 1.23238 0.88718 1.25976 1.01802 0.93747 0.93538 1.69763 1.38643 1.14937 1.12282 0.86175 0.81046 0.79493 0.79607 1.18085 1.19877 1.19542 1.19286 0.78744 0.91936 0.77586 1.90733 1.61238 1.37293 1.51540 1.44090 1.08646 1.07648 1.68739 0.77965 1.68026 1.03790 1.31693 1.25097 1.17740 0.90784 0.88071 0.97268 0.88247 0.92754 0.92758 0.85220 0.85706 0.84955 0.89453 0.90345 0.88889 0.74270 0.94459 0.93578 0.92221 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.92 10.33 -19.35 -0.20 -4.12 16 3 C 0.13 1.79 6.70 -39.20 -0.26 1.53 16 4 C -0.19 -1.94 8.99 -39.77 -0.36 -2.29 16 5 C -0.11 -1.07 9.95 -39.92 -0.40 -1.47 16 6 C -0.09 -0.99 9.33 -39.53 -0.37 -1.36 16 7 C -0.18 -2.55 5.74 -106.82 -0.61 -3.16 16 8 C 0.24 3.63 6.90 -81.73 -0.56 3.06 16 9 C -0.10 -1.16 9.79 36.00 0.35 -0.80 16 10 N -0.46 -8.74 7.39 -9.68 -0.07 -8.81 16 11 C 0.57 10.87 8.36 -322.35 -2.70 8.18 16 12 N -0.60 -11.18 5.48 -14.58 -0.08 -11.26 16 13 C 0.40 8.65 8.42 -320.99 -2.70 5.95 16 14 N -0.42 -9.82 7.27 -9.34 -0.07 -9.89 16 15 C -0.07 -1.71 6.90 -81.48 -0.56 -2.27 16 16 C -0.04 -0.91 9.68 36.00 0.35 -0.56 16 17 C -0.01 -0.19 5.55 -104.33 -0.58 -0.77 16 18 C -0.40 -10.17 7.81 -38.06 -0.30 -10.47 16 19 H 0.09 2.27 7.42 -52.49 -0.39 1.88 16 20 C 0.07 1.88 4.62 -17.30 -0.08 1.80 16 21 N -0.74 -19.61 11.17 55.55 0.62 -18.99 16 22 Si 0.91 18.83 29.61 -169.99 -5.03 13.79 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 C 0.53 13.87 7.48 -12.34 -0.09 13.78 16 27 O -0.53 -15.13 15.07 5.13 0.08 -15.05 16 28 N -0.64 -14.13 5.30 -13.72 -0.07 -14.20 16 29 H 0.39 7.20 8.80 -40.82 -0.36 6.84 16 30 N -0.56 -10.19 10.28 -11.77 -0.12 -10.31 16 31 C 0.19 3.13 6.63 -84.69 -0.56 2.57 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 34 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 35 H 0.13 0.96 6.22 -52.49 -0.33 0.64 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.13 1.00 6.51 -52.49 -0.34 0.66 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.62 6.56 -51.92 -0.34 0.28 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.42 6.59 8.80 -40.82 -0.36 6.23 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.22 7.04 -51.92 -0.37 0.85 16 45 H 0.29 7.00 8.30 -40.82 -0.34 6.66 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -34.30 379.59 -12.62 -46.91 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -4.95 Total: 11.31 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: -8.44 Total: 14.89 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: 0.21 Total: -73.46 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.12 Total: -19.17 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.30 -12.62 -46.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020673251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.688 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds