Wall clock time and date at job start Tue Mar 31 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35922 * 116.99802 * 2 1 4 4 C 1.39789 * 119.58343 * 359.97438 * 3 2 1 5 5 C 1.36151 * 121.02135 * 180.02562 * 4 3 2 6 6 C 1.40304 * 119.66363 * 0.02562 * 5 4 3 7 7 N 1.33904 * 121.90073 * 179.71712 * 6 5 4 8 8 C 1.31797 * 120.21490 * 179.72688 * 7 6 5 9 9 N 1.38752 * 118.66394 * 180.26555 * 8 7 6 10 10 C 1.36970 * 120.00213 * 0.30080 * 9 8 7 11 11 N 1.31911 * 118.70404 * 359.72797 * 10 9 8 12 12 C 1.32282 * 122.34426 * 179.74842 * 11 10 9 13 13 C 1.50700 * 120.24776 * 180.28944 * 12 11 10 14 14 C 1.40677 * 119.49923 * 0.49427 * 12 11 10 15 15 C 1.40627 * 121.15184 * 179.74890 * 14 12 11 16 16 H 1.07997 * 119.99820 * 324.52745 * 15 14 12 17 17 C 1.39893 * 119.99741 * 144.52352 * 15 14 12 18 18 N 1.30962 * 119.99806 * 339.39829 * 17 15 14 19 19 Si 1.86797 * 119.99946 * 159.40247 * 17 15 14 20 20 H 1.48501 * 109.47361 * 59.99915 * 19 17 15 21 21 H 1.48503 * 109.47277 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46769 * 299.99776 * 19 17 15 23 23 C 1.47444 * 117.69131 * 359.77470 * 14 12 11 24 24 O 1.21753 * 121.08858 * 180.02562 * 23 14 12 25 25 N 1.35156 * 117.81443 * 359.97438 * 23 14 12 26 26 H 0.97004 * 119.96674 * 179.97438 * 25 23 14 27 27 N 1.33132 * 122.66419 * 0.57875 * 8 7 6 28 28 C 1.31642 * 121.56621 * 359.70841 * 27 8 7 29 29 C 1.50698 * 120.76633 * 180.02562 * 28 27 8 30 30 C 1.40768 * 118.46765 * 359.97438 * 28 27 8 31 31 C 1.36703 * 119.58307 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46951 * 60.00439 * 1 2 3 33 33 H 1.08997 * 109.46658 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46997 * 299.99642 * 1 2 3 35 35 H 1.07993 * 119.48569 * 0.04927 * 4 3 2 36 36 H 1.08001 * 120.16479 * 179.97438 * 5 4 3 37 37 H 0.97000 * 119.99769 * 180.30282 * 9 8 7 38 38 H 1.08994 * 109.47143 * 270.20424 * 13 12 11 39 39 H 1.09006 * 109.47206 * 30.21187 * 13 12 11 40 40 H 1.09002 * 109.46751 * 150.20635 * 13 12 11 41 41 H 0.97005 * 119.99848 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.47113 * 269.97503 * 29 28 27 43 43 H 1.09004 * 109.47346 * 29.97292 * 29 28 27 44 44 H 1.09000 * 109.47446 * 149.97410 * 29 28 27 45 45 H 1.08001 * 120.26156 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2761 2.3779 -0.0005 5 6 1.8636 3.6061 -0.0011 6 6 3.2630 3.7065 -0.0016 7 7 3.8874 4.8910 -0.0078 8 6 5.2042 4.9467 -0.0027 9 7 5.8178 6.1911 -0.0037 10 6 5.0568 7.3300 -0.0037 11 7 3.7428 7.2139 -0.0082 12 6 2.9395 8.2648 -0.0036 13 6 1.4442 8.0774 -0.0025 14 6 3.4915 9.5588 -0.0041 15 6 2.6701 10.7002 -0.0045 16 1 1.7365 10.6933 -0.5473 17 6 3.0623 11.8444 0.6982 18 7 3.9458 11.7512 1.6604 19 14 2.3258 13.5053 0.2641 20 1 0.8532 13.4576 0.4496 21 1 2.9022 14.5490 1.1493 22 1 2.6362 13.8296 -1.1515 23 6 4.9613 9.6766 -0.0046 24 8 5.5046 10.7662 -0.0046 25 7 5.6855 8.5354 -0.0041 26 1 6.6546 8.5766 -0.0049 27 7 5.9694 3.8572 -0.0027 28 6 5.4477 2.6486 -0.0022 29 6 6.3310 1.4277 -0.0017 30 6 4.0456 2.5231 -0.0011 31 6 3.4116 1.2727 -0.0005 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.1987 2.3038 -0.0001 36 1 1.2553 4.4986 -0.0019 37 1 6.7857 6.2546 -0.0044 38 1 1.0829 8.0321 -1.0298 39 1 1.1947 7.1491 0.5117 40 1 0.9734 8.9153 0.5117 41 1 4.2175 12.5446 2.1479 42 1 6.5436 1.1326 -1.0292 43 1 7.2653 1.6553 0.5116 44 1 5.8231 0.6119 0.5128 45 1 3.9974 0.3654 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020673275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:21 Heat of formation + Delta-G solvation = 68.019535 kcal Electronic energy + Delta-G solvation = -32479.038125 eV Core-core repulsion = 28077.771226 eV Total energy + Delta-G solvation = -4401.266899 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.25598 -39.89152 -39.39831 -37.20486 -36.15744 -35.09219 -34.49979 -33.45807 -32.45805 -31.30593 -30.18412 -29.57244 -28.23687 -27.64697 -27.12586 -25.06268 -23.82722 -23.32168 -22.02088 -21.10447 -20.94733 -18.98321 -18.74796 -17.98140 -17.24125 -16.69235 -16.55683 -15.92366 -15.83601 -15.75758 -15.29811 -15.12181 -14.93877 -14.46657 -14.32357 -14.06221 -13.72417 -13.31558 -13.23992 -13.05367 -12.96060 -12.72796 -12.41310 -12.35195 -12.24109 -11.91470 -11.82838 -11.57103 -11.31536 -11.18431 -11.14076 -11.10114 -10.77676 -10.68819 -10.42577 -10.37308 -9.51079 -9.33660 -9.00462 -8.92260 -8.82892 -8.59919 -7.91293 -7.51139 -7.05233 -6.60495 -4.16565 0.44794 0.95958 2.07201 2.31986 2.80620 3.03859 3.07218 3.10332 3.15349 3.16931 3.62598 3.89476 4.21492 4.24357 4.36530 4.46426 4.60280 4.63721 4.80133 4.88252 4.92415 4.94708 5.19165 5.24701 5.36354 5.38975 5.45044 5.45598 5.60782 5.83060 5.86064 5.95302 6.01095 6.06077 6.26529 6.40969 6.51567 6.72972 6.81653 6.86533 6.90670 6.98890 7.08804 7.21422 7.45337 7.51127 7.58071 7.92856 8.01624 8.28745 8.55384 8.61884 8.73230 9.45448 9.76554 10.05638 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.002540 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.522511 B =11022.821664 C =12760.774903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.096 3.904 4 C -0.154 4.154 5 C -0.061 4.061 6 C 0.173 3.827 7 N -0.464 5.464 8 C 0.549 3.451 9 N -0.602 5.602 10 C 0.402 3.598 11 N -0.422 5.422 12 C -0.071 4.071 13 C -0.044 4.044 14 C -0.007 4.007 15 C -0.399 4.399 16 H 0.094 0.906 17 C 0.075 3.925 18 N -0.737 5.737 19 Si 0.915 3.085 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.262 1.262 23 C 0.530 3.470 24 O -0.532 6.532 25 N -0.643 5.643 26 H 0.385 0.615 27 N -0.552 5.552 28 C 0.238 3.762 29 C -0.106 4.106 30 C -0.174 4.174 31 C -0.111 4.111 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.134 0.866 36 H 0.146 0.854 37 H 0.418 0.582 38 H 0.036 0.964 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.286 0.714 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 -20.109 -1.787 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.050 3.950 4 C -0.176 4.176 5 C -0.080 4.080 6 C 0.041 3.959 7 N -0.185 5.185 8 C 0.192 3.808 9 N -0.235 5.235 10 C 0.056 3.944 11 N -0.145 5.145 12 C -0.196 4.196 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.427 4.427 16 H 0.112 0.888 17 C -0.150 4.150 18 N -0.358 5.358 19 Si 0.739 3.261 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.187 1.187 23 C 0.325 3.675 24 O -0.408 6.408 25 N -0.292 5.292 26 H 0.220 0.780 27 N -0.271 5.271 28 C 0.076 3.924 29 C -0.163 4.163 30 C -0.181 4.181 31 C -0.132 4.132 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.255 0.745 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.348 -18.979 -1.590 19.190 hybrid contribution 0.573 1.004 -0.136 1.164 sum -1.775 -17.976 -1.726 18.146 Atomic orbital electron populations 1.23033 0.78659 1.03742 1.01406 1.86060 1.21151 1.26789 1.89427 1.18551 0.92099 0.84095 1.00217 1.21142 1.00367 0.92009 1.04049 1.20642 0.92365 0.97780 0.97248 1.19010 0.94511 0.87462 0.94890 1.69253 1.07267 1.23619 1.18405 1.18793 0.85564 0.84350 0.92142 1.40181 1.07969 0.99977 1.75323 1.17551 0.87051 0.77639 1.12135 1.67044 0.97830 1.32784 1.16813 1.20346 0.94324 0.86321 1.18587 1.19895 0.90752 1.00269 0.99279 1.20168 0.89025 0.94478 0.97977 1.19212 1.04602 0.95252 1.23677 0.88847 1.25964 0.94081 1.01430 0.93517 1.69757 1.20984 1.32667 1.12387 0.86245 0.79654 0.80229 0.79971 1.18829 1.20249 1.18675 1.19282 0.89008 0.81669 0.77557 1.90724 1.73203 1.25340 1.51555 1.44103 1.10174 1.06110 1.68835 0.78020 1.67256 1.41470 0.98256 1.20167 1.21552 0.90349 0.92206 0.88310 1.20794 0.99035 0.92740 1.03744 1.18916 0.95060 0.94745 1.09356 1.19878 0.91539 0.96755 1.05040 0.92663 0.88451 0.92641 0.84837 0.83662 0.74534 0.94504 0.93679 0.92219 0.90276 0.89484 0.89774 0.89836 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.80 101.05 0.99 1.16 16 2 O -0.32 -3.25 10.47 -19.49 -0.20 -3.46 16 3 C 0.10 1.10 6.64 -39.56 -0.26 0.84 16 4 C -0.15 -1.75 8.94 -39.75 -0.36 -2.10 16 5 C -0.06 -0.87 10.00 -39.56 -0.40 -1.26 16 6 C 0.17 2.89 6.62 -84.79 -0.56 2.33 16 7 N -0.46 -9.07 7.51 -11.85 -0.09 -9.16 16 8 C 0.55 10.16 8.37 -322.37 -2.70 7.46 16 9 N -0.60 -10.91 5.48 -14.58 -0.08 -10.99 16 10 C 0.40 8.74 8.42 -320.99 -2.70 6.04 16 11 N -0.42 -9.97 7.29 -9.34 -0.07 -10.03 16 12 C -0.07 -1.75 6.90 -81.48 -0.56 -2.31 16 13 C -0.04 -0.93 9.68 36.01 0.35 -0.59 16 14 C -0.01 -0.18 5.55 -104.33 -0.58 -0.76 16 15 C -0.40 -10.35 7.81 -38.06 -0.30 -10.65 16 16 H 0.09 2.26 7.42 -52.49 -0.39 1.87 16 17 C 0.08 1.91 4.62 -17.30 -0.08 1.83 16 18 N -0.74 -19.77 11.17 55.55 0.62 -19.15 16 19 Si 0.92 19.00 29.61 -169.99 -5.03 13.97 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 23 C 0.53 13.92 7.48 -12.34 -0.09 13.83 16 24 O -0.53 -15.15 15.07 5.14 0.08 -15.07 16 25 N -0.64 -14.10 5.30 -13.72 -0.07 -14.17 16 26 H 0.38 7.10 8.80 -40.82 -0.36 6.74 16 27 N -0.55 -8.76 10.34 -9.68 -0.10 -8.86 16 28 C 0.24 3.20 6.90 -81.72 -0.56 2.64 16 29 C -0.11 -0.90 9.79 36.00 0.35 -0.55 16 30 C -0.17 -2.46 5.74 -106.82 -0.61 -3.08 16 31 C -0.11 -1.30 9.24 -39.41 -0.36 -1.66 16 32 H 0.05 0.31 7.63 -51.93 -0.40 -0.08 16 33 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.32 7.63 -51.93 -0.40 -0.08 16 35 H 0.13 1.12 6.21 -52.49 -0.33 0.80 16 36 H 0.15 2.06 8.06 -52.49 -0.42 1.63 16 37 H 0.42 6.14 8.80 -40.82 -0.36 5.78 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.25 7.03 -51.93 -0.37 0.88 16 41 H 0.29 7.09 8.30 -40.82 -0.34 6.75 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.55 6.56 -51.93 -0.34 0.21 16 45 H 0.14 1.24 6.51 -52.49 -0.34 0.90 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -33.97 379.73 -12.61 -46.58 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -4.95 Total: 11.45 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: -8.44 Total: 13.17 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: 0.21 Total: -72.37 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.13 Total: -18.53 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.97 -12.61 -46.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020673275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.599 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds