Wall clock time and date at job start Tue Mar 31 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48506 * 109.47058 * 240.00124 * 3 2 1 5 5 H 1.48495 * 109.46930 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47006 * 120.00127 * 3 2 1 7 7 C 1.40122 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.46191 * 120.00080 * 0.02562 * 7 2 1 10 10 O 1.21728 * 120.00198 * 359.97438 * 9 7 2 11 11 N 1.34784 * 120.00433 * 179.97438 * 9 7 2 12 12 C 1.39070 * 120.00213 * 185.27964 * 11 9 7 13 13 C 1.39267 * 119.93486 * 33.64471 * 12 11 9 14 14 C 1.37603 * 120.07116 * 180.02562 * 13 12 11 15 15 C 1.39843 * 119.93054 * 359.97438 * 14 13 12 16 16 C 1.47455 * 120.06849 * 179.97438 * 15 14 13 17 17 O 1.21512 * 120.00212 * 359.97438 * 16 15 14 18 18 O 1.34750 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.45204 * 117.00201 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47145 * 179.97438 * 19 18 16 21 21 N 1.31743 * 123.77981 * 89.97584 * 20 19 18 22 22 N 1.27568 * 118.27972 * 179.97438 * 21 20 19 23 23 S 1.56512 * 109.25643 * 359.97438 * 22 21 20 24 24 C 1.35491 * 123.78744 * 269.95430 * 20 19 18 25 25 Cl 1.73603 * 127.92760 * 0.03946 * 24 20 19 26 26 C 1.39836 * 119.86273 * 0.25429 * 15 14 13 27 27 C 1.37609 * 119.93176 * 359.52979 * 26 15 14 28 28 H 0.96998 * 120.00312 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99409 * 5.28192 * 11 9 7 30 30 H 1.08003 * 119.96313 * 359.97438 * 13 12 11 31 31 H 1.07999 * 120.04048 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47062 * 59.99512 * 19 18 16 33 33 H 1.09000 * 109.46985 * 300.00037 * 19 18 16 34 34 H 1.08000 * 120.03407 * 179.75447 * 26 15 14 35 35 H 1.08003 * 119.96605 * 180.21065 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6965 -1.2126 5 1 1.2752 2.7464 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2134 0.0001 9 6 1.2761 -2.4795 0.0005 10 8 0.0588 -2.4796 0.0005 11 7 1.9499 -3.6468 0.0005 12 6 1.2590 -4.8487 -0.1103 13 6 0.0987 -4.9151 -0.8777 14 6 -0.5874 -6.1026 -0.9889 15 6 -0.1182 -7.2438 -0.3307 16 6 -0.8514 -8.5178 -0.4472 17 8 -1.8646 -8.5768 -1.1153 18 8 -0.3984 -9.6165 0.1880 19 6 -1.1710 -10.8356 0.0290 20 6 -0.5166 -11.9498 0.8045 21 7 -0.7940 -12.2282 2.0620 22 7 -0.1765 -13.1967 2.6170 23 16 0.8110 -13.8379 1.5857 24 6 0.4227 -12.7777 0.2867 25 17 1.0828 -12.7708 -1.3189 26 6 1.0444 -7.1728 0.4431 27 6 1.7286 -5.9833 0.5467 28 1 -0.4850 0.8400 -0.0004 29 1 2.9168 -3.6486 0.0779 30 1 -0.2633 -4.0333 -1.3855 31 1 -1.4873 -6.1535 -1.5838 32 1 -1.2131 -11.1040 -1.0266 33 1 -2.1820 -10.6764 0.4040 34 1 1.4070 -8.0514 0.9558 35 1 2.6285 -5.9287 1.1414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021664591.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:46 Heat of formation + Delta-G solvation = -22.313341 kcal Electronic energy + Delta-G solvation = -25992.435486 eV Core-core repulsion = 21723.612541 eV Total energy + Delta-G solvation = -4268.822945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 367.023 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64700 -40.40748 -39.18559 -37.69707 -37.11281 -36.39058 -33.70851 -33.18215 -32.59910 -30.61424 -29.75416 -28.07216 -27.18681 -26.43485 -23.59417 -22.49277 -21.86506 -20.99948 -19.93882 -19.56214 -18.04377 -17.57207 -17.36312 -16.82487 -16.35839 -16.28732 -16.19628 -15.60799 -14.84854 -14.54189 -14.13522 -13.96478 -13.83858 -13.35532 -13.21874 -13.14743 -13.04765 -12.85728 -12.71527 -12.61377 -12.07559 -11.92776 -11.60497 -11.39663 -11.15620 -10.93878 -10.84308 -10.72603 -10.71748 -10.63257 -10.45482 -10.30732 -10.07745 -9.53723 -9.01471 -8.66608 -7.92545 -7.35006 -6.46170 -4.94774 -0.58365 -0.00776 0.76267 1.07907 1.26284 1.42300 1.82448 2.70383 2.77259 3.03072 3.08328 3.10236 3.39912 3.87288 3.89237 4.09265 4.38729 4.43211 4.45658 4.81211 4.92691 5.08891 5.24613 5.29995 5.49688 5.73080 5.87068 6.03388 6.20896 6.38722 6.54556 6.79542 6.85756 7.02428 7.12767 7.18987 7.55680 7.82020 7.84734 7.99828 8.72949 9.01602 10.22452 10.43657 Molecular weight = 367.02amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.001677 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.160016 B =16691.668086 C =16884.295322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.537 3.463 10 O -0.554 6.554 11 N -0.694 5.694 12 C 0.239 3.761 13 C -0.147 4.147 14 C -0.026 4.026 15 C -0.187 4.187 16 C 0.522 3.478 17 O -0.515 6.515 18 O -0.349 6.349 19 C 0.151 3.849 20 C 0.036 3.964 21 N -0.205 5.205 22 N -0.274 5.274 23 S 0.485 5.515 24 C -0.216 4.216 25 Cl 0.047 6.953 26 C -0.034 4.034 27 C -0.196 4.196 28 H 0.275 0.725 29 H 0.397 0.603 30 H 0.148 0.852 31 H 0.132 0.868 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -26.350 -0.816 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.436 6.436 11 N -0.335 5.335 12 C 0.136 3.864 13 C -0.168 4.168 14 C -0.046 4.046 15 C -0.190 4.190 16 C 0.370 3.630 17 O -0.404 6.404 18 O -0.266 6.266 19 C 0.073 3.927 20 C -0.111 4.111 21 N -0.072 5.072 22 N -0.255 5.255 23 S 0.620 5.380 24 C -0.381 4.381 25 Cl 0.075 6.925 26 C -0.053 4.053 27 C -0.217 4.217 28 H 0.086 0.914 29 H 0.231 0.769 30 H 0.166 0.834 31 H 0.150 0.850 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.146 0.854 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.924 -27.044 0.553 27.332 hybrid contribution 0.629 1.619 -1.260 2.146 sum 4.553 -25.424 -0.707 25.839 Atomic orbital electron populations 1.69956 1.07199 1.28221 1.32925 1.25764 0.94757 1.00647 0.92507 0.86298 0.79790 0.80329 0.79669 1.19041 1.20309 1.19055 1.20831 0.93877 0.88843 1.53526 0.90834 1.18468 0.87563 0.82001 0.77471 1.90663 1.13570 1.85822 1.53517 1.44331 1.10094 1.04537 1.74536 1.18303 0.92162 0.86452 0.89438 1.21303 0.96731 0.98207 1.00557 1.21047 0.97983 0.90314 0.95211 1.18710 0.99999 0.90518 1.09797 1.21271 0.82808 0.83381 0.75577 1.90822 1.24971 1.85266 1.39389 1.86582 1.53472 1.18026 1.68492 1.20991 0.94226 0.78848 0.98589 1.21838 0.98238 0.99882 0.91158 1.71387 1.19824 1.08633 1.07404 1.78961 1.11312 1.10572 1.24620 1.81688 1.34384 1.28231 0.93670 1.28095 1.04876 1.06099 0.99035 1.98435 1.82774 1.97504 1.13777 1.21011 0.92446 0.97323 0.94521 1.20856 1.03723 0.92938 1.04205 0.91441 0.76886 0.83399 0.85016 0.88384 0.88123 0.85357 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.20 11.82 55.55 0.66 -20.54 16 2 C 0.09 2.21 5.50 -17.36 -0.10 2.12 16 3 Si 0.92 18.77 29.56 -169.99 -5.02 13.75 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.54 -13.90 9.54 -35.68 -0.34 -14.24 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.54 14.11 7.46 -13.06 -0.10 14.01 16 10 O -0.55 -16.54 12.69 5.16 0.07 -16.47 16 11 N -0.69 -14.45 5.30 -11.19 -0.06 -14.51 16 12 C 0.24 4.64 6.27 -83.81 -0.53 4.11 16 13 C -0.15 -2.97 8.62 -39.43 -0.34 -3.31 16 14 C -0.03 -0.47 9.58 -39.21 -0.38 -0.84 16 15 C -0.19 -3.06 5.88 -104.95 -0.62 -3.68 16 16 C 0.52 8.08 7.89 34.48 0.27 8.36 16 17 O -0.51 -8.82 16.13 -19.28 -0.31 -9.13 16 18 O -0.35 -4.64 9.44 -40.63 -0.38 -5.02 16 19 C 0.15 1.64 5.80 36.01 0.21 1.85 16 20 C 0.04 0.36 6.53 -83.61 -0.55 -0.18 16 21 N -0.21 -2.36 11.68 32.51 0.38 -1.98 16 22 N -0.27 -2.73 12.54 60.35 0.76 -1.97 16 23 S 0.49 3.04 23.40 -107.50 -2.52 0.52 16 24 C -0.22 -1.72 7.28 29.75 0.22 -1.50 16 25 Cl 0.05 0.33 28.83 -51.86 -1.50 -1.16 16 26 C -0.03 -0.51 9.60 -39.21 -0.38 -0.88 16 27 C -0.20 -3.11 9.94 -39.43 -0.39 -3.50 16 28 H 0.27 7.00 8.29 -40.82 -0.34 6.67 16 29 H 0.40 6.89 8.79 -40.82 -0.36 6.53 16 30 H 0.15 3.39 6.41 -52.48 -0.34 3.06 16 31 H 0.13 2.22 7.64 -52.49 -0.40 1.82 16 32 H 0.10 0.93 7.82 -51.93 -0.41 0.52 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.13 1.61 7.60 -52.49 -0.40 1.21 16 35 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -33.00 353.21 -7.91 -40.90 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -2.29 Total: 7.99 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -3.01 Total: 2.31 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 1.73 Total: -39.00 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.63 Total: -30.62 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.52 Total: 0.52 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.50 Total: -1.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.00 -7.91 -40.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021664591.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.591 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds