Wall clock time and date at job start Tue Mar 31 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47028 * 2 1 4 4 C 1.39149 * 119.96162 * 269.95229 * 3 2 1 5 5 C 1.39060 * 119.75431 * 0.02562 * 4 3 2 6 6 C 1.37973 * 120.01821 * 179.97438 * 5 4 3 7 7 C 1.38514 * 120.25989 * 359.97348 * 6 5 4 8 8 S 1.76207 * 119.86690 * 180.02562 * 7 6 5 9 9 O 1.42097 * 106.40008 * 203.53712 * 8 7 6 10 10 O 1.42095 * 106.40057 * 336.46090 * 8 7 6 11 11 N 1.65600 * 107.21874 * 89.99903 * 8 7 6 12 12 C 1.46505 * 119.99789 * 90.00063 * 11 8 7 13 13 C 1.46500 * 119.99935 * 270.00087 * 11 8 7 14 14 C 1.37938 * 120.26317 * 0.30089 * 7 6 5 15 15 C 1.39127 * 120.01016 * 359.44657 * 14 7 6 16 16 N 1.39118 * 119.75707 * 180.25328 * 15 14 7 17 17 C 1.36200 * 119.95876 * 0.25829 * 16 15 14 18 18 H 1.08002 * 119.99697 * 314.50013 * 17 16 15 19 19 C 1.39494 * 119.99787 * 134.50613 * 17 16 15 20 20 N 1.31026 * 119.99812 * 160.93140 * 19 17 16 21 21 Si 1.86800 * 120.00283 * 340.92015 * 19 17 16 22 22 H 1.48501 * 109.46905 * 95.24158 * 21 19 17 23 23 H 1.48493 * 109.47315 * 215.24135 * 21 19 17 24 24 H 1.48509 * 109.47004 * 335.24602 * 21 19 17 25 25 C 1.34843 * 120.07987 * 180.28001 * 16 15 14 26 26 O 1.21566 * 120.29460 * 179.97438 * 25 16 15 27 27 C 1.34839 * 119.96236 * 90.00021 * 3 2 1 28 28 O 1.21554 * 120.30224 * 359.97438 * 27 3 2 29 29 H 1.08992 * 109.47222 * 299.99812 * 1 2 3 30 30 H 1.09001 * 109.46921 * 60.00279 * 1 2 3 31 31 H 1.09003 * 109.47074 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47580 * 239.99994 * 2 1 3 33 33 H 1.09005 * 109.47327 * 120.00001 * 2 1 3 34 34 H 1.07993 * 119.99442 * 359.94937 * 5 4 3 35 35 H 1.07995 * 119.86816 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47462 * 60.00237 * 12 11 8 37 37 H 1.09000 * 109.46976 * 179.97438 * 12 11 8 38 38 H 1.08996 * 109.47276 * 299.99555 * 12 11 8 39 39 H 1.08998 * 109.47035 * 90.00214 * 13 11 8 40 40 H 1.08997 * 109.46793 * 209.99828 * 13 11 8 41 41 H 1.08997 * 109.47045 * 329.99981 * 13 11 8 42 42 H 1.08000 * 119.99044 * 179.71913 * 14 7 6 43 43 H 0.97003 * 119.99667 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2509 2.0361 -1.2055 5 6 2.0176 1.3748 -2.4064 6 6 2.2458 2.0191 -3.6049 7 6 2.7070 3.3252 -3.6185 8 16 2.9944 4.1383 -5.1550 9 8 3.9359 5.1699 -4.8931 10 8 3.2104 3.1146 -6.1165 11 7 1.5828 4.8912 -5.5828 12 6 1.3267 6.2675 -5.1510 13 6 0.5902 4.1809 -6.3930 14 6 2.9475 3.9898 -2.4340 15 6 2.7161 3.3526 -1.2190 16 7 2.9555 4.0297 -0.0276 17 6 3.4097 5.3134 -0.0542 18 1 4.2145 5.5878 -0.7202 19 6 2.8354 6.2738 0.7787 20 7 3.4803 7.3840 1.0403 21 14 1.1470 5.9773 1.5209 22 1 1.2986 5.4066 2.8834 23 1 0.4093 7.2634 1.6022 24 1 0.3911 5.0260 0.6670 25 6 2.7388 3.4164 1.1536 26 8 2.9472 4.0042 2.1971 27 6 2.2428 2.0162 1.1682 28 8 2.0414 1.4479 2.2237 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6580 0.3565 -2.4009 35 1 2.0634 1.5034 -4.5360 36 1 2.1041 6.9224 -5.5445 37 1 0.3556 6.5911 -5.5257 38 1 1.3299 6.3132 -4.0620 39 1 -0.1030 3.6531 -5.7379 40 1 0.0396 4.8969 -7.0031 41 1 1.0953 3.4643 -7.0405 42 1 3.3114 5.0066 -2.4497 43 1 3.0808 8.0520 1.6192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022341300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:04 Heat of formation + Delta-G solvation = -71.447263 kcal Electronic energy + Delta-G solvation = -32729.601909 eV Core-core repulsion = 28289.605382 eV Total energy + Delta-G solvation = -4439.996527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.108 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.55923 -38.78018 -38.55784 -37.18359 -36.19727 -35.90596 -35.71234 -35.14018 -32.89403 -31.59321 -30.17778 -29.19540 -28.16313 -26.88770 -24.75426 -24.01330 -23.66829 -23.10853 -21.32718 -19.81473 -19.14552 -18.56851 -18.20973 -17.36492 -16.98496 -16.52348 -16.09545 -16.06573 -15.59805 -15.17608 -14.74226 -14.66301 -14.52778 -14.26364 -14.07378 -13.94453 -13.56737 -13.45963 -13.36882 -13.18150 -12.88183 -12.74065 -12.66051 -12.58399 -12.30443 -12.17713 -11.99236 -11.72304 -11.66198 -11.55940 -11.36934 -11.20849 -10.98809 -10.75790 -10.70208 -10.58684 -10.44040 -9.81230 -9.16516 -9.06479 -8.95003 -8.48118 -7.40688 -6.74438 -4.57297 0.42400 0.88194 1.21129 2.04409 2.57082 2.90385 3.09192 3.11627 3.28964 3.34729 3.55850 3.80026 3.99358 4.15663 4.29235 4.38539 4.68525 4.70325 4.76615 4.88361 5.02545 5.04157 5.21070 5.26544 5.27196 5.33787 5.50357 5.53090 5.55359 5.60638 5.69813 5.76882 5.84212 5.85944 5.88033 5.99826 6.04090 6.19764 6.44083 6.48529 6.76495 6.91624 7.23378 7.46918 7.77123 8.08033 8.24967 8.75691 9.00221 10.27803 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.009663 B = 0.004904 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.993704 B = 5708.828693 C = 7568.550823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.528 5.528 4 C 0.149 3.851 5 C -0.147 4.147 6 C -0.038 4.038 7 C -0.676 4.676 8 S 2.698 3.302 9 O -0.949 6.949 10 O -0.962 6.962 11 N -1.007 6.007 12 C 0.087 3.913 13 C 0.084 3.916 14 C -0.001 4.001 15 C 0.108 3.892 16 N -0.354 5.354 17 C -0.378 4.378 18 H 0.121 0.879 19 C 0.109 3.891 20 N -0.818 5.818 21 Si 0.883 3.117 22 H -0.247 1.247 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.428 3.572 26 O -0.473 6.473 27 C 0.499 3.501 28 O -0.493 6.493 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.164 0.836 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.750 -8.958 -14.693 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.254 5.254 4 C 0.048 3.952 5 C -0.169 4.169 6 C -0.059 4.059 7 C -0.766 4.766 8 S 2.789 3.211 9 O -0.939 6.939 10 O -0.952 6.952 11 N -0.846 5.846 12 C -0.058 4.058 13 C -0.062 4.062 14 C -0.023 4.023 15 C 0.005 3.995 16 N -0.066 5.066 17 C -0.503 4.503 18 H 0.138 0.862 19 C -0.108 4.108 20 N -0.448 5.448 21 Si 0.709 3.291 22 H -0.172 1.172 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.217 3.783 26 O -0.348 6.348 27 C 0.286 3.714 28 O -0.364 6.364 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.181 0.819 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.962 -8.712 -13.614 18.018 hybrid contribution -1.284 -0.327 1.141 1.749 sum -9.246 -9.039 -12.472 17.965 Atomic orbital electron populations 1.22135 0.94728 1.02741 1.03135 1.21801 0.95463 0.80965 1.04531 1.45970 1.60154 1.14571 1.04679 1.17757 1.00109 0.91235 0.86131 1.20638 1.05909 1.00422 0.89882 1.20405 0.95357 0.92174 0.98011 1.30625 1.19211 1.07290 1.19461 1.01795 0.72510 0.73197 0.73597 1.93605 1.57931 1.56635 1.85725 1.93539 1.83946 1.58749 1.58955 1.57327 1.38050 1.23310 1.65934 1.21616 1.02748 0.80646 1.00801 1.21632 0.92115 0.97458 0.94971 1.20659 0.93179 1.00470 0.88024 1.18138 1.01722 0.90605 0.89010 1.41362 1.50852 1.12833 1.01509 1.19059 1.20737 0.81283 1.29247 0.86171 1.25305 0.98022 0.93978 0.93498 1.69524 1.36476 1.08253 1.30537 0.86747 0.81899 0.78155 0.82277 1.17203 1.20986 1.19738 1.19974 0.86296 0.86287 0.85770 1.90746 1.49912 1.63489 1.30624 1.20878 0.78801 0.88382 0.83385 1.90764 1.49473 1.66515 1.29640 0.91910 0.91876 0.90808 0.88977 0.88631 0.84410 0.84247 0.91245 0.90261 0.91416 0.92641 0.90686 0.89945 0.81867 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16 2 C 0.09 1.15 5.57 -4.04 -0.02 1.13 16 3 N -0.53 -9.09 2.68 -114.16 -0.31 -9.39 16 4 C 0.15 2.51 6.52 -83.71 -0.55 1.96 16 5 C -0.15 -1.89 9.19 -39.37 -0.36 -2.25 16 6 C -0.04 -0.48 9.51 -39.58 -0.38 -0.86 16 7 C -0.68 -9.97 5.97 -39.59 -0.24 -10.21 16 8 S 2.70 37.30 5.70 -107.50 -0.61 36.69 16 9 O -0.95 -16.11 16.42 -57.17 -0.94 -17.05 16 10 O -0.96 -14.08 15.87 -57.17 -0.91 -14.99 16 11 N -1.01 -10.84 3.58 -129.21 -0.46 -11.31 16 12 C 0.09 0.86 10.30 59.85 0.62 1.48 16 13 C 0.08 0.65 10.63 59.85 0.64 1.29 16 14 C 0.00 -0.02 8.72 -39.36 -0.34 -0.36 16 15 C 0.11 2.15 6.49 -83.70 -0.54 1.61 16 16 N -0.35 -8.47 2.30 -59.70 -0.14 -8.61 16 17 C -0.38 -9.85 8.38 -15.14 -0.13 -9.98 16 18 H 0.12 3.18 7.33 -52.49 -0.38 2.79 16 19 C 0.11 2.93 4.84 -17.43 -0.08 2.85 16 20 N -0.82 -22.50 13.94 55.52 0.77 -21.73 16 21 Si 0.88 22.03 25.00 -169.99 -4.25 17.78 16 22 H -0.25 -6.63 6.49 56.52 0.37 -6.27 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.43 10.78 5.90 -11.97 -0.07 10.71 16 26 O -0.47 -13.48 13.00 -11.24 -0.15 -13.62 16 27 C 0.50 10.89 7.69 -11.98 -0.09 10.80 16 28 O -0.49 -11.42 16.56 -11.23 -0.19 -11.61 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.83 6.15 -51.93 -0.32 0.51 16 33 H 0.10 1.21 7.43 -51.93 -0.39 0.82 16 34 H 0.14 1.27 6.09 -52.49 -0.32 0.95 16 35 H 0.14 1.36 7.60 -52.49 -0.40 0.96 16 36 H 0.07 0.69 8.01 -51.93 -0.42 0.27 16 37 H 0.08 0.56 7.79 -51.93 -0.40 0.16 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.43 7.92 -51.93 -0.41 0.02 16 41 H 0.08 0.64 7.02 -51.93 -0.36 0.27 16 42 H 0.16 3.06 6.11 -52.49 -0.32 2.74 16 43 H 0.29 7.27 8.30 -40.82 -0.34 6.94 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -35.01 366.16 -7.83 -42.84 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.01 Total: -1.25 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.17 Total: 6.71 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.13 Total: -51.04 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -2.18 Total: -57.27 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.25 Total: 17.78 kcal Atomic # 16 Polarization: 37.30 SS G_CDS: -0.61 Total: 36.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.01 -7.83 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022341300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.602 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds