Wall clock time and date at job start Tue Mar 31 2020 04:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86804 * 119.99602 * 2 1 4 4 H 1.48498 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47417 * 300.00000 * 3 2 1 6 6 H 1.48505 * 109.46939 * 60.00280 * 3 2 1 7 7 C 1.38886 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99801 * 185.47152 * 7 2 1 9 9 N 1.37143 * 120.00129 * 5.46361 * 7 2 1 10 10 C 1.34770 * 120.00178 * 233.62328 * 9 7 2 11 11 O 1.21279 * 119.99938 * 186.00326 * 10 9 7 12 12 C 1.50699 * 119.99908 * 6.00771 * 10 9 7 13 13 N 1.46504 * 109.46973 * 174.99248 * 12 10 9 14 14 C 1.35763 * 119.62655 * 269.72776 * 13 12 10 15 15 C 1.35348 * 120.70207 * 179.76298 * 14 13 12 16 16 C 1.40194 * 119.95000 * 0.51001 * 15 14 13 17 17 C 1.36399 * 119.26231 * 359.74406 * 16 15 14 18 18 C 1.50706 * 120.34824 * 180.02562 * 17 16 15 19 19 F 1.39904 * 109.46854 * 359.97438 * 18 17 16 20 20 F 1.39900 * 109.47080 * 119.97698 * 18 17 16 21 21 F 1.39897 * 109.47400 * 239.98233 * 18 17 16 22 22 C 1.34665 * 119.62578 * 89.99718 * 13 12 10 23 23 O 1.22057 * 119.98161 * 0.02562 * 22 13 12 24 24 C 1.39790 * 119.99715 * 53.62943 * 9 7 2 25 25 C 1.38956 * 120.07723 * 188.28385 * 24 9 7 26 26 C 1.38082 * 119.92153 * 179.78669 * 25 24 9 27 27 C 1.38307 * 120.07846 * 0.46521 * 26 25 24 28 28 C 1.38313 * 120.15766 * 359.78264 * 27 26 25 29 29 C 1.38086 * 120.07159 * 359.97438 * 28 27 26 30 30 H 0.96999 * 120.00428 * 4.99750 * 1 2 3 31 31 H 1.08998 * 109.47015 * 294.98761 * 12 10 9 32 32 H 1.08995 * 109.47645 * 54.99428 * 12 10 9 33 33 H 1.08000 * 119.64664 * 359.97438 * 14 13 12 34 34 H 1.08001 * 120.02542 * 180.27037 * 15 14 13 35 35 H 1.07998 * 120.37034 * 179.73376 * 16 15 14 36 36 H 1.08000 * 120.04160 * 359.97438 * 25 24 9 37 37 H 1.08000 * 119.96489 * 180.25002 * 26 25 24 38 38 H 1.08001 * 119.92880 * 179.76683 * 27 26 25 39 39 H 1.07996 * 119.96604 * 179.97438 * 28 27 26 40 40 H 1.08004 * 120.03364 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3466 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3965 1.2126 7 6 2.0087 -1.2028 -0.0005 8 1 3.0850 -1.2048 0.0886 9 7 1.3278 -2.3877 -0.1142 10 6 1.5138 -3.3620 0.7982 11 8 0.9972 -4.4478 0.6399 12 6 2.3638 -3.1023 2.0153 13 7 2.3130 -4.2661 2.9038 14 6 1.3593 -4.3334 3.8677 15 6 1.2894 -5.4005 4.6973 16 6 2.2149 -6.4460 4.5723 17 6 3.1755 -6.3742 3.6066 18 6 4.1824 -7.4846 3.4501 19 9 3.9339 -8.4772 4.4042 20 9 4.0761 -8.0332 2.1676 21 9 5.4719 -6.9740 3.6336 22 6 3.2161 -5.2543 2.7586 23 8 4.0709 -5.1769 1.8908 24 6 0.4408 -2.5850 -1.1764 25 6 -0.3764 -3.7086 -1.2018 26 6 -1.2546 -3.8980 -2.2505 27 6 -1.3145 -2.9760 -3.2796 28 6 -0.4989 -1.8591 -3.2603 29 6 0.3781 -1.6608 -2.2122 30 1 -0.4851 0.8368 -0.0732 31 1 3.3943 -2.9249 1.7076 32 1 1.9859 -2.2262 2.5422 33 1 0.6468 -3.5284 3.9714 34 1 0.5235 -5.4447 5.4575 35 1 2.1680 -7.2987 5.2334 36 1 -0.3271 -4.4313 -0.4008 37 1 -1.8930 -4.7690 -2.2688 38 1 -1.9995 -3.1285 -4.1005 39 1 -0.5479 -1.1414 -4.0657 40 1 1.0150 -0.7886 -2.1979 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023107684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:08 Heat of formation + Delta-G solvation = -130.919573 kcal Electronic energy + Delta-G solvation = -33422.562727 eV Core-core repulsion = 28368.112506 eV Total energy + Delta-G solvation = -5054.450221 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.098 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.94652 -47.52437 -47.32047 -41.48802 -39.71294 -37.37534 -36.91029 -35.23473 -34.77653 -32.09409 -30.76982 -29.80940 -29.54983 -27.56773 -26.33174 -25.37117 -23.35231 -22.75929 -21.80404 -21.28255 -19.75077 -18.65633 -18.50995 -18.27035 -17.88572 -17.04650 -16.88250 -16.73226 -15.76008 -15.66572 -15.35968 -15.19316 -14.55466 -14.46738 -14.37547 -14.26648 -14.19388 -13.83815 -13.54731 -13.53554 -13.50272 -13.21206 -13.08467 -12.95030 -12.61259 -12.39457 -12.32478 -11.95270 -11.82975 -11.73433 -11.46343 -11.42738 -11.23338 -10.94199 -10.57544 -10.53168 -10.13400 -9.96923 -9.44242 -8.96951 -8.56739 -8.10023 -7.89918 -7.06865 -6.48812 -4.72886 0.48987 1.81791 2.27435 2.39127 2.45996 2.90644 2.95794 3.03207 3.06084 3.41599 3.49423 3.80465 3.89759 4.15837 4.28495 4.54531 4.58803 4.63622 4.65404 4.85524 5.02103 5.08621 5.36933 5.48692 5.64302 5.71448 5.78993 5.80622 5.91021 5.93293 6.07056 6.34887 6.56259 6.60957 6.74682 6.97934 6.99833 7.09057 7.38092 7.49396 7.51731 7.61540 7.91998 7.99973 8.25008 8.64954 8.97445 9.38033 10.29847 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.003242 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.956978 B = 8633.300627 C = 9712.536690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.061 3.939 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.376 5.376 10 C 0.478 3.522 11 O -0.557 6.557 12 C 0.087 3.913 13 N -0.470 5.470 14 C 0.194 3.806 15 C -0.259 4.259 16 C 0.057 3.943 17 C -0.332 4.332 18 C 0.536 3.464 19 F -0.184 7.184 20 F -0.171 7.171 21 F -0.175 7.175 22 C 0.544 3.456 23 O -0.526 6.526 24 C 0.193 3.807 25 C -0.179 4.179 26 C -0.117 4.117 27 C -0.170 4.170 28 C -0.120 4.120 29 C -0.104 4.104 30 H 0.277 0.723 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.171 0.829 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.163 0.837 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.342 -4.956 9.699 10.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.507 4.507 8 H 0.115 0.885 9 N -0.084 5.084 10 C 0.268 3.732 11 O -0.440 6.440 12 C -0.036 4.036 13 N -0.176 5.176 14 C 0.063 3.937 15 C -0.282 4.282 16 C 0.035 3.965 17 C -0.338 4.338 18 C 0.481 3.519 19 F -0.165 7.165 20 F -0.153 7.153 21 F -0.156 7.156 22 C 0.344 3.656 23 O -0.406 6.406 24 C 0.097 3.903 25 C -0.199 4.199 26 C -0.136 4.136 27 C -0.190 4.190 28 C -0.139 4.139 29 C -0.125 4.125 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.189 0.811 34 H 0.173 0.827 35 H 0.164 0.836 36 H 0.180 0.820 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.592 -5.258 9.112 10.537 hybrid contribution 0.207 0.991 -0.164 1.026 sum 0.800 -4.267 8.949 9.946 Atomic orbital electron populations 1.69961 1.06156 1.28903 1.41693 1.25632 0.95346 1.00185 0.93935 0.86029 0.80214 0.81149 0.78536 1.18659 1.19993 1.20139 1.19488 0.91906 0.81964 1.57384 0.88548 1.40897 1.35688 1.13730 1.18040 1.20680 0.83064 0.84992 0.84423 1.90369 1.51491 1.25222 1.76934 1.21819 1.04837 0.85914 0.91054 1.45267 1.25387 1.19964 1.27026 1.22355 0.88169 0.98336 0.84863 1.20548 1.05545 0.95527 1.06551 1.21379 0.87914 0.96498 0.90757 1.20654 1.05661 1.00055 1.07419 1.17490 0.80028 0.80601 0.73754 1.93123 1.94229 1.64178 1.64993 1.93231 1.95974 1.86673 1.39377 1.93202 1.40530 1.86947 1.94910 1.16083 0.82042 0.82474 0.85032 1.91022 1.36350 1.78254 1.34985 1.18125 0.91116 0.93593 0.87505 1.22320 0.96745 0.99726 1.01088 1.20842 0.98970 0.98705 0.95082 1.20785 1.01998 0.96553 0.99634 1.20749 0.97422 0.97484 0.98196 1.20756 0.99903 0.99261 0.92534 0.91295 0.85426 0.85310 0.81149 0.82681 0.83614 0.82024 0.87628 0.88002 0.87616 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.83 11.62 55.49 0.64 -19.19 16 2 C 0.06 1.34 3.85 -17.49 -0.07 1.27 16 3 Si 0.92 17.18 29.56 -169.99 -5.02 12.16 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.38 -8.58 7.40 -14.94 -0.11 -8.69 16 8 H 0.10 2.09 7.78 -52.49 -0.41 1.69 16 9 N -0.38 -8.81 2.66 -58.98 -0.16 -8.96 16 10 C 0.48 10.49 7.59 -10.99 -0.08 10.41 16 11 O -0.56 -13.22 12.93 5.56 0.07 -13.15 16 12 C 0.09 1.52 4.64 -5.19 -0.02 1.49 16 13 N -0.47 -7.47 2.09 -121.07 -0.25 -7.73 16 14 C 0.19 2.25 10.28 -16.84 -0.17 2.08 16 15 C -0.26 -2.47 10.01 -39.88 -0.40 -2.87 16 16 C 0.06 0.63 9.48 -39.51 -0.37 0.25 16 17 C -0.33 -5.06 5.38 -104.42 -0.56 -5.63 16 18 C 0.54 8.32 3.02 36.01 0.11 8.43 16 19 F -0.18 -2.37 16.00 2.25 0.04 -2.33 16 20 F -0.17 -3.04 17.01 2.25 0.04 -3.00 16 21 F -0.17 -2.86 17.00 2.25 0.04 -2.82 16 22 C 0.54 9.93 7.29 -15.45 -0.11 9.81 16 23 O -0.53 -11.59 15.64 4.87 0.08 -11.52 16 24 C 0.19 4.64 5.71 -83.70 -0.48 4.16 16 25 C -0.18 -4.15 8.96 -39.37 -0.35 -4.50 16 26 C -0.12 -2.39 10.04 -39.61 -0.40 -2.79 16 27 C -0.17 -3.29 10.04 -39.53 -0.40 -3.69 16 28 C -0.12 -2.42 10.04 -39.61 -0.40 -2.82 16 29 C -0.10 -2.38 7.86 -39.37 -0.31 -2.69 16 30 H 0.28 6.24 8.32 -40.82 -0.34 5.90 16 31 H 0.13 2.28 7.32 -51.93 -0.38 1.90 16 32 H 0.13 1.89 7.92 -51.93 -0.41 1.48 16 33 H 0.17 1.47 8.03 -52.49 -0.42 1.04 16 34 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.15 1.16 7.17 -52.49 -0.38 0.79 16 36 H 0.16 3.89 4.75 -55.00 -0.26 3.63 16 37 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 40 H 0.12 2.88 6.03 -52.48 -0.32 2.57 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -30.73 356.97 -6.68 -37.42 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -3.40 Total: 9.50 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -4.13 Total: 4.24 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.23 Total: -35.88 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: 0.15 Total: -24.67 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 0.11 Total: -8.15 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.02 Total: 12.16 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.73 -6.68 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023107684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.502 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds