Wall clock time and date at job start Tue Mar 31 2020 04:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.75346 * 124.30457 * 2 1 4 4 C 1.75772 * 92.18841 * 179.90790 * 3 2 1 5 5 N 1.33952 * 131.18863 * 180.02562 * 4 3 2 6 6 C 1.32010 * 120.97775 * 180.35062 * 5 4 3 7 7 S 1.76199 * 119.01708 * 180.02562 * 6 5 4 8 8 C 1.81003 * 99.99958 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47285 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99849 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99914 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00235 * 359.97438 * 11 9 8 13 13 C 1.46502 * 119.99858 * 179.97438 * 11 9 8 14 14 C 1.50697 * 109.46902 * 89.99860 * 13 11 9 15 15 H 1.08001 * 120.00514 * 0.02562 * 14 13 11 16 16 C 1.37881 * 119.99768 * 179.97438 * 14 13 11 17 17 N 1.31511 * 120.00169 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99804 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47065 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46773 * 120.00367 * 18 16 14 21 21 H 1.48501 * 109.47227 * 240.00309 * 18 16 14 22 22 N 1.32798 * 121.96004 * 0.02676 * 6 5 4 23 23 C 1.32348 * 121.11742 * 359.95113 * 22 6 5 24 24 N 1.38298 * 120.46233 * 180.02562 * 23 22 6 25 25 C 1.39673 * 109.62073 * 0.34310 * 4 3 2 26 26 C 1.31822 * 124.30484 * 180.29060 * 2 1 3 27 27 C 1.50701 * 122.59142 * 0.03118 * 26 2 1 28 28 H 1.09001 * 109.47349 * 269.70273 * 1 2 3 29 29 H 1.08999 * 109.47137 * 29.70382 * 1 2 3 30 30 H 1.09003 * 109.46819 * 149.70258 * 1 2 3 31 31 H 1.09003 * 109.47108 * 299.99883 * 8 7 6 32 32 H 1.09003 * 109.47177 * 59.99610 * 8 7 6 33 33 H 1.08998 * 109.46930 * 89.99665 * 12 11 9 34 34 H 1.08995 * 109.46996 * 210.00234 * 12 11 9 35 35 H 1.08996 * 109.46716 * 330.00204 * 12 11 9 36 36 H 1.09000 * 109.47326 * 210.00142 * 13 11 9 37 37 H 1.09001 * 109.47069 * 330.00134 * 13 11 9 38 38 H 0.97001 * 120.00305 * 179.97438 * 17 16 14 39 39 H 0.96998 * 120.00280 * 192.04361 * 24 23 22 40 40 H 0.96996 * 119.99942 * 12.03433 * 24 23 22 41 41 H 1.08995 * 109.47421 * 96.22963 * 27 26 2 42 42 H 1.08996 * 109.47198 * 216.23249 * 27 26 2 43 43 H 1.09001 * 109.47155 * 336.23397 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4952 1.4484 0.0000 4 6 3.9839 0.5140 0.0028 5 7 5.2670 0.8988 0.0046 6 6 6.2430 0.0099 -0.0003 7 16 7.9124 0.5735 0.0031 8 6 8.7804 -1.0148 -0.0066 9 6 10.2681 -0.7743 -0.0046 10 8 10.6991 0.3594 0.0023 11 7 11.1195 -1.8189 -0.0114 12 6 10.5989 -3.1883 -0.0202 13 6 12.5658 -1.5851 -0.0100 14 6 13.0617 -1.5141 1.4113 15 1 12.3690 -1.6318 2.2315 16 6 14.4000 -1.2999 1.6646 17 7 15.2436 -1.1571 0.6658 18 14 15.0146 -1.2112 3.4264 19 1 13.8744 -1.4010 4.3585 20 1 16.0221 -2.2783 3.6534 21 1 15.6362 0.1158 3.6676 22 7 6.0040 -1.2964 -0.0077 23 6 4.7664 -1.7653 -0.0096 24 7 4.5331 -3.1284 -0.0168 25 6 3.6818 -0.8497 -0.0042 26 6 2.2499 -1.0889 -0.0055 27 6 1.6586 -2.4750 -0.0132 28 1 -0.3634 -0.0053 1.0276 29 1 -0.3633 0.8926 -0.5092 30 1 -0.3633 -0.8873 -0.5185 31 1 8.5037 -1.5854 0.8799 32 1 8.5036 -1.5746 -0.9000 33 1 10.4697 -3.5212 -1.0500 34 1 11.3017 -3.8474 0.4894 35 1 9.6380 -3.2149 0.4935 36 1 13.0665 -2.4023 -0.5291 37 1 12.7824 -0.6452 -0.5177 38 1 16.1851 -1.0060 0.8440 39 1 3.6414 -3.4670 -0.1935 40 1 5.2611 -3.7460 0.1545 41 1 1.6190 -2.8475 -1.0368 42 1 2.2781 -3.1377 0.5909 43 1 0.6507 -2.4424 0.4006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023107778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:38 Heat of formation + Delta-G solvation = 34.182682 kcal Electronic energy + Delta-G solvation = -26968.910569 eV Core-core repulsion = 23073.966033 eV Total energy + Delta-G solvation = -3894.944536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.093 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.15077 -38.97153 -37.58240 -35.94477 -34.91647 -32.94285 -32.65998 -31.15802 -30.09567 -29.85632 -27.46960 -26.64646 -25.70183 -24.70982 -23.59587 -22.69107 -19.95568 -19.32809 -18.72463 -18.28095 -17.37866 -16.61232 -16.40581 -16.19659 -16.15586 -15.76818 -15.35698 -15.16958 -15.03033 -14.42712 -14.22637 -13.98406 -13.79138 -13.42886 -13.20051 -13.05646 -12.88925 -12.64920 -12.44235 -12.37171 -12.23230 -12.05040 -11.89570 -11.68968 -11.28634 -11.17219 -11.13161 -10.88242 -10.62255 -10.34400 -10.17782 -9.87318 -9.64228 -9.46618 -9.12254 -8.98253 -8.45225 -8.35260 -7.74900 -7.51812 -6.05998 -4.10855 0.20595 0.80106 0.94461 1.29528 1.57672 1.74329 2.09936 3.00098 3.24475 3.29780 3.37940 3.42243 3.44410 3.88486 4.01704 4.29463 4.40512 4.43792 4.51377 4.66649 4.77578 4.97240 4.97921 5.01090 5.06700 5.17187 5.21339 5.28917 5.37244 5.46887 5.49303 5.66176 5.72261 5.87920 5.96129 6.16042 6.35323 6.72049 6.95946 7.13781 7.39133 7.45825 7.81611 7.89703 8.19809 8.27254 8.81385 8.97581 9.54249 11.02178 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.001943 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.463806 B =14405.933595 C =14954.214667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.193 4.193 3 S 0.163 5.837 4 C 0.135 3.865 5 N -0.514 5.514 6 C 0.342 3.658 7 S 0.106 5.894 8 C -0.148 4.148 9 C 0.519 3.481 10 O -0.527 6.527 11 N -0.594 5.594 12 C 0.081 3.919 13 C 0.245 3.755 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.282 1.282 22 N -0.590 5.590 23 C 0.504 3.496 24 N -0.831 5.831 25 C -0.244 4.244 26 C -0.061 4.061 27 C -0.107 4.107 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.035 0.965 37 H 0.046 0.954 38 H 0.263 0.737 39 H 0.412 0.588 40 H 0.410 0.590 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.824 -6.072 -3.256 33.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.310 4.310 3 S 0.423 5.577 4 C -0.118 4.118 5 N -0.238 5.238 6 C -0.037 4.037 7 S 0.342 5.658 8 C -0.300 4.300 9 C 0.303 3.697 10 O -0.404 6.404 11 N -0.326 5.326 12 C -0.063 4.063 13 C 0.126 3.874 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.208 1.208 22 N -0.321 5.321 23 C 0.247 3.753 24 N -0.379 5.379 25 C -0.264 4.264 26 C -0.073 4.073 27 C -0.166 4.166 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.247 0.753 40 H 0.241 0.759 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -31.251 -2.388 -3.296 31.515 hybrid contribution -0.585 -3.580 0.980 3.757 sum -31.836 -5.968 -2.315 32.473 Atomic orbital electron populations 1.20354 0.87163 1.03375 1.02982 1.23671 1.00200 0.95648 1.11490 1.84222 0.90526 1.05581 1.77350 1.23589 0.97127 0.93707 0.97425 1.68165 0.96674 1.36553 1.22403 1.25293 1.01001 0.85837 0.91570 1.86816 0.84622 1.06221 1.88114 1.23898 0.97226 1.00487 1.08397 1.19427 0.86002 0.85865 0.78372 1.90728 1.78023 1.21701 1.49973 1.48066 1.09128 1.04564 1.70832 1.21700 0.99463 0.84492 1.00651 1.19371 0.71984 0.98301 0.97734 1.21453 0.93185 1.49780 0.92207 0.92325 1.24940 0.96663 0.94999 0.97516 1.69938 1.03519 1.49088 1.30717 0.86429 0.78690 0.77725 0.84508 1.19783 1.20987 1.20791 1.68265 1.20398 1.15689 1.27772 1.18248 0.87526 0.85390 0.84181 1.42565 1.15247 1.02618 1.77472 1.19779 0.93755 0.94190 1.18691 1.19082 0.89734 0.96259 1.02231 1.20748 1.01446 0.91869 1.02566 0.90520 0.90988 0.90316 0.86371 0.86498 0.93476 0.90477 0.92305 0.94684 0.93573 0.92716 0.75266 0.75943 0.90488 0.91125 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 9.64 36.00 0.35 -0.01 16 2 C -0.19 -1.54 6.38 -36.21 -0.23 -1.77 16 3 S 0.16 1.66 23.20 -107.50 -2.49 -0.83 16 4 C 0.14 1.84 7.69 -16.09 -0.12 1.72 16 5 N -0.51 -8.23 10.42 -12.19 -0.13 -8.36 16 6 C 0.34 5.40 7.85 -91.10 -0.71 4.68 16 7 S 0.11 1.79 21.38 -107.50 -2.30 -0.51 16 8 C -0.15 -2.35 3.83 36.01 0.14 -2.21 16 9 C 0.52 10.87 7.69 -10.99 -0.08 10.78 16 10 O -0.53 -13.30 15.44 5.55 0.09 -13.21 16 11 N -0.59 -12.48 2.86 -182.96 -0.52 -13.00 16 12 C 0.08 1.24 10.24 59.85 0.61 1.85 16 13 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 14 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 15 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 18 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 22 N -0.59 -8.13 9.10 -12.32 -0.11 -8.24 16 23 C 0.50 5.76 7.87 -154.66 -1.22 4.54 16 24 N -0.83 -5.72 8.79 31.55 0.28 -5.44 16 25 C -0.24 -2.83 6.06 -105.19 -0.64 -3.47 16 26 C -0.06 -0.51 5.96 -103.77 -0.62 -1.13 16 27 C -0.11 -0.47 8.37 36.01 0.30 -0.17 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.24 7.06 -51.93 -0.37 -0.13 16 31 H 0.12 1.70 7.37 -51.91 -0.38 1.32 16 32 H 0.12 1.61 8.07 -51.91 -0.42 1.19 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 36 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 37 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.41 1.81 5.20 -40.82 -0.21 1.60 16 40 H 0.41 2.29 8.95 -40.82 -0.37 1.93 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.26 6.02 -51.93 -0.31 -0.05 16 43 H 0.08 0.24 6.84 -51.93 -0.35 -0.12 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -36.17 385.13 -11.55 -47.73 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -5.21 Total: -2.64 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -2.68 Total: 7.57 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.25 Total: -60.84 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -4.79 Total: -1.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.17 -11.55 -47.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023107778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.910 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds