Wall clock time and date at job start Tue Mar 31 2020 04:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.75346 * 124.30457 * 2 1 4 4 C 1.75772 * 92.18841 * 179.90790 * 3 2 1 5 5 N 1.33952 * 131.18863 * 180.02562 * 4 3 2 6 6 C 1.32010 * 120.97775 * 180.35062 * 5 4 3 7 7 S 1.76199 * 119.01708 * 180.02562 * 6 5 4 8 8 C 1.81003 * 99.99958 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47285 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99849 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99914 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00235 * 359.97438 * 11 9 8 13 13 C 1.46502 * 119.99858 * 179.97438 * 11 9 8 14 14 C 1.50697 * 109.46902 * 89.99860 * 13 11 9 15 15 H 1.08001 * 120.00514 * 0.02562 * 14 13 11 16 16 C 1.37881 * 119.99768 * 179.97438 * 14 13 11 17 17 N 1.31511 * 120.00169 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99804 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47065 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46773 * 120.00367 * 18 16 14 21 21 H 1.48501 * 109.47227 * 240.00309 * 18 16 14 22 22 N 1.32798 * 121.96004 * 0.02676 * 6 5 4 23 23 C 1.32348 * 121.11742 * 359.95113 * 22 6 5 24 24 N 1.38298 * 120.46233 * 180.02562 * 23 22 6 25 25 C 1.39673 * 109.62073 * 0.34310 * 4 3 2 26 26 C 1.31822 * 124.30484 * 180.29060 * 2 1 3 27 27 C 1.50701 * 122.59142 * 0.03118 * 26 2 1 28 28 H 1.09001 * 109.47349 * 269.70273 * 1 2 3 29 29 H 1.08999 * 109.47137 * 29.70382 * 1 2 3 30 30 H 1.09003 * 109.46819 * 149.70258 * 1 2 3 31 31 H 1.09003 * 109.47108 * 299.99883 * 8 7 6 32 32 H 1.09003 * 109.47177 * 59.99610 * 8 7 6 33 33 H 1.08998 * 109.46930 * 89.99665 * 12 11 9 34 34 H 1.08995 * 109.46996 * 210.00234 * 12 11 9 35 35 H 1.08996 * 109.46716 * 330.00204 * 12 11 9 36 36 H 1.09000 * 109.47326 * 210.00142 * 13 11 9 37 37 H 1.09001 * 109.47069 * 330.00134 * 13 11 9 38 38 H 0.97001 * 120.00305 * 179.97438 * 17 16 14 39 39 H 0.96998 * 120.00280 * 192.04361 * 24 23 22 40 40 H 0.96996 * 119.99942 * 12.03433 * 24 23 22 41 41 H 1.08995 * 109.47421 * 96.22963 * 27 26 2 42 42 H 1.08996 * 109.47198 * 216.23249 * 27 26 2 43 43 H 1.09001 * 109.47155 * 336.23397 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4952 1.4484 0.0000 4 6 3.9839 0.5140 0.0028 5 7 5.2670 0.8988 0.0046 6 6 6.2430 0.0099 -0.0003 7 16 7.9124 0.5735 0.0031 8 6 8.7804 -1.0148 -0.0066 9 6 10.2681 -0.7743 -0.0046 10 8 10.6991 0.3594 0.0023 11 7 11.1195 -1.8189 -0.0114 12 6 10.5989 -3.1883 -0.0202 13 6 12.5658 -1.5851 -0.0100 14 6 13.0617 -1.5141 1.4113 15 1 12.3690 -1.6318 2.2315 16 6 14.4000 -1.2999 1.6646 17 7 15.2436 -1.1571 0.6658 18 14 15.0146 -1.2112 3.4264 19 1 13.8744 -1.4010 4.3585 20 1 16.0221 -2.2783 3.6534 21 1 15.6362 0.1158 3.6676 22 7 6.0040 -1.2964 -0.0077 23 6 4.7664 -1.7653 -0.0096 24 7 4.5331 -3.1284 -0.0168 25 6 3.6818 -0.8497 -0.0042 26 6 2.2499 -1.0889 -0.0055 27 6 1.6586 -2.4750 -0.0132 28 1 -0.3634 -0.0053 1.0276 29 1 -0.3633 0.8926 -0.5092 30 1 -0.3633 -0.8873 -0.5185 31 1 8.5037 -1.5854 0.8799 32 1 8.5036 -1.5746 -0.9000 33 1 10.4697 -3.5212 -1.0500 34 1 11.3017 -3.8474 0.4894 35 1 9.6380 -3.2149 0.4935 36 1 13.0665 -2.4023 -0.5291 37 1 12.7824 -0.6452 -0.5177 38 1 16.1851 -1.0060 0.8440 39 1 3.6414 -3.4670 -0.1935 40 1 5.2611 -3.7460 0.1545 41 1 1.6190 -2.8475 -1.0368 42 1 2.2781 -3.1377 0.5909 43 1 0.6507 -2.4424 0.4006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023107778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:38 Heat of formation + Delta-G solvation = 9.886962 kcal Electronic energy + Delta-G solvation = -26969.964111 eV Core-core repulsion = 23073.966033 eV Total energy + Delta-G solvation = -3895.998078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.093 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04315 -40.66573 -38.27973 -36.74771 -36.67804 -34.78495 -33.74828 -31.92825 -31.62635 -30.31627 -29.22919 -27.37811 -27.22190 -25.58830 -24.90789 -24.22229 -20.74974 -20.47297 -19.78676 -19.30959 -18.72106 -18.20125 -17.99841 -17.33182 -16.96434 -16.82973 -16.77536 -16.48334 -16.08853 -15.94672 -15.06304 -15.01596 -14.66826 -14.49699 -14.36319 -13.93470 -13.74369 -13.68228 -13.58754 -13.46045 -13.45291 -13.21881 -13.13248 -12.83257 -12.80444 -12.56735 -12.49894 -12.22890 -12.07677 -11.81713 -11.69454 -11.50881 -10.86924 -10.65268 -10.61420 -10.43870 -9.77155 -9.51015 -9.27154 -8.57402 -8.23432 -6.37723 -0.69208 -0.15692 0.03419 0.23217 0.87325 0.92024 1.02826 1.36017 1.39147 1.50299 1.63761 2.23200 2.27413 2.41945 2.48267 3.06664 3.27346 3.44485 3.55844 3.63898 3.75367 3.99089 4.14436 4.23706 4.32196 4.44887 4.66508 4.68712 4.71178 4.74383 4.77507 4.82576 4.93969 4.98560 5.10946 5.21502 5.22613 5.45729 5.52661 5.54778 5.78540 6.02293 6.03889 6.44673 6.58560 6.71848 6.95181 7.19815 7.35984 8.84011 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.001943 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.463806 B =14405.933595 C =14954.214667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.181 4.181 3 S 0.156 5.844 4 C 0.091 3.909 5 N -0.544 5.544 6 C 0.335 3.665 7 S 0.050 5.950 8 C -0.117 4.117 9 C 0.511 3.489 10 O -0.581 6.581 11 N -0.599 5.599 12 C 0.075 3.925 13 C 0.259 3.741 14 C -0.543 4.543 15 H 0.054 0.946 16 C 0.007 3.993 17 N -0.927 5.927 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.268 1.268 21 H -0.283 1.283 22 N -0.597 5.597 23 C 0.495 3.505 24 N -0.805 5.805 25 C -0.239 4.239 26 C -0.071 4.071 27 C -0.107 4.107 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.031 0.969 37 H 0.001 0.999 38 H 0.267 0.733 39 H 0.426 0.574 40 H 0.419 0.581 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.526 -9.093 -2.424 37.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.297 4.297 3 S 0.416 5.584 4 C -0.160 4.160 5 N -0.269 5.269 6 C -0.046 4.046 7 S 0.285 5.715 8 C -0.269 4.269 9 C 0.298 3.702 10 O -0.462 6.462 11 N -0.330 5.330 12 C -0.067 4.067 13 C 0.137 3.863 14 C -0.581 4.581 15 H 0.072 0.928 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.193 1.193 21 H -0.209 1.209 22 N -0.329 5.329 23 C 0.237 3.763 24 N -0.354 5.354 25 C -0.260 4.260 26 C -0.083 4.083 27 C -0.166 4.166 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.049 0.951 37 H 0.019 0.981 38 H 0.076 0.924 39 H 0.264 0.736 40 H 0.252 0.748 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -35.046 -5.495 -2.471 35.560 hybrid contribution 0.325 -2.677 0.670 2.779 sum -34.721 -8.172 -1.801 35.715 Atomic orbital electron populations 1.20546 0.84261 1.04858 1.04312 1.24181 1.01732 0.94016 1.09818 1.84200 0.89870 1.07468 1.76818 1.24057 0.96985 0.95639 0.99298 1.68038 0.97912 1.37569 1.23392 1.24761 0.99839 0.86720 0.93243 1.86967 0.86973 1.07873 1.89668 1.23610 0.92742 1.00082 1.10421 1.20206 0.88081 0.84924 0.77001 1.90698 1.79438 1.23934 1.52160 1.48057 1.07309 1.07171 1.70510 1.22028 1.00634 0.81037 1.03007 1.18850 0.75350 0.95813 0.96248 1.21719 0.93537 1.49864 0.92989 0.92761 1.25850 0.96913 0.94463 1.01936 1.70049 1.03954 1.49715 1.32942 0.85372 0.78371 0.77898 0.79191 1.19170 1.19289 1.20882 1.68194 1.21604 1.14555 1.28543 1.18469 0.86883 0.86993 0.83986 1.42527 1.16485 1.00815 1.75610 1.20200 0.95592 0.93401 1.16826 1.19439 0.88032 0.98519 1.02275 1.20887 1.02428 0.89215 1.04041 0.89128 0.90384 0.87909 0.84390 0.83939 0.90647 0.90931 0.88829 0.95114 0.98106 0.92372 0.73588 0.74814 0.88761 0.90290 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 9.64 71.23 0.69 0.28 16 2 C -0.18 -2.39 6.38 24.90 0.16 -2.23 16 3 S 0.16 3.10 23.20 -56.49 -1.31 1.79 16 4 C 0.09 2.49 7.69 84.72 0.65 3.15 16 5 N -0.54 -18.07 10.42 -192.49 -2.01 -20.08 16 6 C 0.34 10.77 7.85 180.52 1.42 12.18 16 7 S 0.05 1.77 21.38 -56.49 -1.21 0.56 16 8 C -0.12 -3.66 3.83 71.24 0.27 -3.39 16 9 C 0.51 21.90 7.69 87.66 0.67 22.58 16 10 O -0.58 -31.01 15.44 -3.04 -0.05 -31.06 16 11 N -0.60 -25.44 2.86 -851.14 -2.43 -27.87 16 12 C 0.07 2.15 10.24 127.77 1.31 3.45 16 13 C 0.26 13.98 5.16 85.63 0.44 14.43 16 14 C -0.54 -31.43 9.39 25.60 0.24 -31.19 16 15 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 16 C 0.01 0.43 5.46 84.66 0.46 0.90 16 17 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 18 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 N -0.60 -15.81 9.10 -192.89 -1.76 -17.56 16 23 C 0.50 10.35 7.87 134.02 1.06 11.40 16 24 N -0.80 -8.34 8.79 -54.08 -0.48 -8.82 16 25 C -0.24 -5.18 6.06 -20.23 -0.12 -5.31 16 26 C -0.07 -0.98 5.96 -18.87 -0.11 -1.09 16 27 C -0.11 -0.45 8.37 71.24 0.60 0.15 16 28 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 0.09 7.06 -2.39 -0.02 0.08 16 31 H 0.14 3.75 7.37 -2.39 -0.02 3.73 16 32 H 0.14 3.69 8.07 -2.39 -0.02 3.67 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 35 H 0.09 2.03 6.44 -2.39 -0.02 2.02 16 36 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 37 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.43 2.00 5.20 -92.71 -0.48 1.51 16 40 H 0.42 3.15 8.95 -92.71 -0.83 2.32 16 41 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.08 0.21 6.02 -2.39 -0.01 0.20 16 43 H 0.10 0.05 6.84 -2.39 -0.02 0.03 16 Total: -1.00 -84.73 385.13 0.59 -84.14 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -0.22 Total: 2.19 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 7.73 Total: 25.31 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -6.38 Total: -130.37 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.06 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -2.52 Total: 2.35 kcal Total: -84.73 0.59 -84.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023107778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.032 kcal (2) G-P(sol) polarization free energy of solvation -84.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds