Wall clock time and date at job start Tue Mar 31 2020 04:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31698 * 119.71948 * 2 1 4 4 C 1.31925 * 121.88381 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.45916 * 180.02562 * 4 3 2 6 6 F 1.39896 * 109.46978 * 4.99909 * 5 4 3 7 7 F 1.39896 * 109.47488 * 125.00071 * 5 4 3 8 8 F 1.39903 * 109.46723 * 245.00348 * 5 4 3 9 9 C 1.38359 * 121.08179 * 0.02562 * 4 3 2 10 10 C 1.38350 * 119.30540 * 359.74700 * 9 4 3 11 11 C 1.39538 * 119.71952 * 180.02562 * 2 1 3 12 12 C 1.47808 * 120.55880 * 359.95491 * 11 2 1 13 13 O 1.21563 * 120.00151 * 0.90513 * 12 11 2 14 14 N 1.34774 * 119.99854 * 180.90016 * 12 11 2 15 15 C 1.39916 * 119.99993 * 173.87948 * 14 12 11 16 16 C 1.38940 * 120.00210 * 147.01261 * 15 14 12 17 17 C 1.37992 * 119.99684 * 180.02562 * 16 15 14 18 18 C 1.38913 * 120.00166 * 0.02562 * 17 16 15 19 19 O 1.35782 * 119.99471 * 179.97438 * 18 17 16 20 20 C 1.34807 * 117.00241 * 356.70691 * 19 18 17 21 21 H 1.07996 * 120.00048 * 5.01666 * 20 19 18 22 22 C 1.38631 * 119.99949 * 185.02217 * 20 19 18 23 23 N 1.31573 * 119.99996 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99955 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47130 * 89.99875 * 24 22 20 26 26 H 1.48499 * 109.47470 * 210.00133 * 24 22 20 27 27 H 1.48504 * 109.47311 * 330.00302 * 24 22 20 28 28 C 1.38910 * 120.00823 * 0.25108 * 18 17 16 29 29 C 1.38003 * 120.00223 * 359.45532 * 28 18 17 30 30 H 1.08997 * 109.46730 * 261.79876 * 1 2 3 31 31 H 1.08998 * 109.46970 * 21.79797 * 1 2 3 32 32 H 1.08996 * 109.46970 * 141.79501 * 1 2 3 33 33 H 1.07999 * 120.34601 * 180.02562 * 9 4 3 34 34 H 1.08001 * 120.85984 * 180.27738 * 10 9 4 35 35 H 0.97004 * 120.00066 * 353.87792 * 14 12 11 36 36 H 1.08000 * 120.00323 * 359.97438 * 16 15 14 37 37 H 1.07995 * 120.00213 * 180.02562 * 17 16 15 38 38 H 0.96999 * 119.99701 * 180.02562 * 23 22 20 39 39 H 1.08005 * 120.00037 * 179.72621 * 28 18 17 40 40 H 1.07998 * 120.00066 * 180.27261 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1936 -0.0005 5 6 4.1693 2.5328 0.0001 6 9 3.2155 3.5496 0.1161 7 9 5.0559 2.5996 1.0802 8 9 4.8779 2.6923 -1.1956 9 6 4.2367 0.0364 -0.0016 10 6 3.5990 -1.1913 0.0032 11 6 2.1988 -1.2118 -0.0005 12 6 1.4660 -2.4955 -0.0001 13 8 0.2504 -2.5015 -0.0159 14 7 2.1454 -3.6593 0.0177 15 6 1.4560 -4.8699 0.1473 16 6 1.9365 -6.0134 -0.4787 17 6 1.2562 -7.2072 -0.3512 18 6 0.0908 -7.2656 0.4026 19 8 -0.5787 -8.4402 0.5275 20 6 -0.0973 -9.4952 -0.1600 21 1 0.8277 -9.4048 -0.7099 22 6 -0.7899 -10.6961 -0.1611 23 7 -1.9172 -10.8061 0.5083 24 14 -0.1233 -12.1578 -1.1143 25 1 0.7670 -12.9577 -0.2352 26 1 -1.2526 -13.0040 -1.5768 27 1 0.6459 -11.6738 -2.2888 28 6 -0.3927 -6.1211 1.0238 29 6 0.2906 -4.9284 0.9015 30 1 -0.3633 -0.1466 1.0171 31 1 -0.3633 0.9542 -0.3816 32 1 -0.3633 -0.8075 -0.6356 33 1 5.3154 0.0911 -0.0016 34 1 4.1664 -2.1103 0.0070 35 1 3.1124 -3.6576 -0.0594 36 1 2.8418 -5.9678 -1.0658 37 1 1.6298 -8.0962 -0.8374 38 1 -2.4015 -11.6465 0.5078 39 1 -1.3012 -6.1656 1.6062 40 1 -0.0830 -4.0396 1.3881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024673147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:22 Heat of formation + Delta-G solvation = -134.182527 kcal Electronic energy + Delta-G solvation = -31025.327775 eV Core-core repulsion = 25970.736061 eV Total energy + Delta-G solvation = -5054.591713 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.59827 -48.14386 -48.02682 -41.45402 -39.92551 -38.72499 -36.69998 -34.65030 -33.63090 -33.28348 -32.24530 -30.34669 -28.84892 -28.40318 -26.96584 -25.41703 -23.78333 -23.04835 -22.48018 -21.78798 -20.52378 -19.07290 -18.99303 -18.76606 -18.48473 -17.96076 -17.48055 -16.90744 -16.05149 -15.68711 -15.48825 -15.04297 -14.97112 -14.82986 -14.65742 -14.55713 -14.50297 -14.26166 -14.21717 -14.18157 -13.97304 -13.67821 -13.55984 -13.51947 -12.92037 -12.80869 -12.70718 -12.50594 -12.33491 -11.90226 -11.69922 -11.62095 -11.12458 -10.80724 -10.64017 -10.52870 -10.46454 -9.92723 -9.78486 -9.65157 -9.33845 -8.80048 -8.32801 -7.05166 -6.52336 -4.10323 -0.25115 0.47680 1.91766 1.93839 2.08649 2.48758 2.85877 3.06495 3.07036 3.08823 3.13723 3.17608 3.37720 3.89378 3.90245 3.95106 4.04057 4.11449 4.28808 4.42345 4.50997 4.86136 5.01927 5.11439 5.15547 5.22243 5.42695 5.50849 5.59714 5.64003 5.64747 5.93359 6.07972 6.11762 6.19461 6.66712 6.70268 6.81892 7.01393 7.05284 7.12279 7.29614 7.46643 7.63722 7.91593 8.05053 8.92679 9.61503 10.65186 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.029621 B = 0.001631 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.041023 B =17166.416843 C =17750.845452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.196 3.804 3 N -0.449 5.449 4 C 0.061 3.939 5 C 0.522 3.478 6 F -0.160 7.160 7 F -0.170 7.170 8 F -0.170 7.170 9 C -0.137 4.137 10 C -0.038 4.038 11 C -0.153 4.153 12 C 0.551 3.449 13 O -0.504 6.504 14 N -0.648 5.648 15 C 0.029 3.971 16 C -0.086 4.086 17 C -0.220 4.220 18 C 0.149 3.851 19 O -0.173 6.173 20 C -0.393 4.393 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.859 5.859 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.177 4.177 29 C -0.064 4.064 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.400 0.600 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.271 0.729 39 H 0.122 0.878 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.410 22.060 -1.422 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.057 3.943 3 N -0.158 5.158 4 C -0.079 4.079 5 C 0.466 3.534 6 F -0.141 7.141 7 F -0.151 7.151 8 F -0.151 7.151 9 C -0.157 4.157 10 C -0.064 4.064 11 C -0.158 4.158 12 C 0.337 3.663 13 O -0.381 6.381 14 N -0.292 5.292 15 C -0.063 4.063 16 C -0.106 4.106 17 C -0.240 4.240 18 C 0.094 3.906 19 O -0.076 6.076 20 C -0.469 4.469 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.493 5.493 24 Si 0.767 3.233 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.197 4.197 29 C -0.084 4.084 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.236 0.764 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.081 0.919 39 H 0.140 0.860 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.690 22.628 -1.243 25.973 hybrid contribution 1.723 -1.235 -0.567 2.194 sum 14.413 21.393 -1.809 25.859 Atomic orbital electron populations 1.21215 0.86111 1.04808 1.05112 1.21596 0.98036 0.85345 0.89274 1.67199 1.07344 1.29899 1.11322 1.21135 0.91766 0.92801 1.02213 1.17861 0.76827 0.84567 0.74097 1.93251 1.63581 1.61714 1.95544 1.93243 1.69610 1.96669 1.55585 1.93250 1.79358 1.96053 1.46446 1.21708 1.02127 0.91615 1.00257 1.21817 0.93165 0.98694 0.92702 1.21094 0.94391 0.95648 1.04683 1.17838 0.87371 0.82988 0.78055 1.90773 1.12757 1.86415 1.48106 1.43076 1.09934 1.04568 1.71632 1.17164 0.98444 0.84382 1.06325 1.20454 0.99784 0.91883 0.98450 1.20976 0.98228 0.98293 1.06479 1.19430 0.90837 0.87293 0.93014 1.83992 1.48763 1.14313 1.60486 1.21326 1.08012 0.88014 1.29550 0.88968 1.25313 0.95505 0.98368 0.97352 1.70043 1.14113 1.26598 1.38551 0.85699 0.78443 0.79926 0.79282 1.19841 1.20203 1.19173 1.20123 1.02548 0.90472 1.06557 1.20578 0.94005 0.97118 0.96692 0.89222 0.90691 0.86717 0.82818 0.82884 0.76435 0.87095 0.84978 0.91892 0.85970 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 8.92 36.01 0.32 -0.87 16 2 C 0.20 2.11 6.82 -82.16 -0.56 1.55 16 3 N -0.45 -4.91 9.63 -5.41 -0.05 -4.96 16 4 C 0.06 0.56 6.27 -82.51 -0.52 0.04 16 5 C 0.52 4.56 3.31 36.01 0.12 4.68 16 6 F -0.16 -1.63 16.85 2.25 0.04 -1.59 16 7 F -0.17 -1.40 17.15 2.25 0.04 -1.36 16 8 F -0.17 -1.44 17.28 2.25 0.04 -1.40 16 9 C -0.14 -0.92 9.59 -39.50 -0.38 -1.30 16 10 C -0.04 -0.25 9.65 -38.86 -0.37 -0.63 16 11 C -0.15 -1.50 5.89 -104.82 -0.62 -2.12 16 12 C 0.55 6.80 7.47 -12.35 -0.09 6.71 16 13 O -0.50 -7.71 10.98 5.31 0.06 -7.65 16 14 N -0.65 -7.61 5.29 -10.69 -0.06 -7.67 16 15 C 0.03 0.46 6.28 -83.65 -0.53 -0.06 16 16 C -0.09 -1.40 9.95 -39.41 -0.39 -1.79 16 17 C -0.22 -4.42 9.16 -39.42 -0.36 -4.79 16 18 C 0.15 3.43 6.65 -39.08 -0.26 3.17 16 19 O -0.17 -4.76 9.75 0.02 0.00 -4.76 16 20 C -0.39 -10.56 9.48 30.88 0.29 -10.26 16 21 H 0.09 2.26 5.19 -52.49 -0.27 1.99 16 22 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -24.55 13.67 55.48 0.76 -23.79 16 24 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 26 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 28 C -0.18 -3.66 9.98 -39.42 -0.39 -4.05 16 29 C -0.06 -1.15 8.65 -39.41 -0.34 -1.49 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 1.34 5.76 -51.93 -0.30 1.04 16 33 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.15 0.53 6.53 -52.49 -0.34 0.18 16 35 H 0.40 3.14 6.94 -40.82 -0.28 2.86 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.13 2.64 5.61 -52.49 -0.29 2.34 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 40 H 0.13 2.14 6.41 -52.49 -0.34 1.80 16 LS Contribution 360.27 15.07 5.43 5.43 Total: -1.00 -31.79 360.27 -6.02 -37.82 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.08 Total: 5.40 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -4.18 Total: -10.25 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.65 Total: -36.43 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.06 Total: -12.40 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.12 Total: -4.35 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.79 -6.02 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024673147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.366 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds