Wall clock time and date at job start Tue Mar 31 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00304 * 2 1 4 4 H 1.48503 * 109.47037 * 240.00253 * 3 2 1 5 5 H 1.48496 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46901 * 120.00440 * 3 2 1 7 7 C 1.37883 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99791 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46844 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99879 * 269.72048 * 10 9 7 12 12 S 1.71195 * 119.99886 * 185.05956 * 11 10 9 13 13 N 1.34779 * 119.99801 * 5.06416 * 11 10 9 14 14 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46996 * 179.97438 * 14 13 11 16 16 N 1.46901 * 109.47018 * 179.97438 * 15 14 13 17 17 C 1.47008 * 111.00380 * 293.63724 * 16 15 14 18 18 C 1.53095 * 109.25914 * 177.60677 * 17 16 15 19 19 O 1.43020 * 109.25891 * 56.85333 * 18 17 16 20 20 C 1.43015 * 113.73221 * 301.32652 * 19 18 17 21 21 C 1.47015 * 111.00038 * 169.99765 * 16 15 14 22 22 C 1.40013 * 120.00018 * 90.00335 * 10 9 7 23 23 C 1.38854 * 120.04583 * 68.73022 * 22 10 9 24 24 C 1.38118 * 119.95058 * 179.74904 * 23 22 10 25 25 C 1.38473 * 120.04525 * 0.52522 * 24 23 22 26 26 F 1.35097 * 119.95283 * 179.70909 * 25 24 23 27 27 C 1.38469 * 120.09269 * 359.72072 * 25 24 23 28 28 C 1.38116 * 120.04359 * 0.03148 * 27 25 24 29 29 H 0.97004 * 119.99739 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47005 * 60.00197 * 9 7 2 31 31 H 1.09005 * 109.46767 * 300.00361 * 9 7 2 32 32 H 0.96999 * 120.00263 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47143 * 299.99847 * 14 13 11 34 34 H 1.09006 * 109.47041 * 60.00131 * 14 13 11 35 35 H 1.08997 * 109.47293 * 300.00053 * 15 14 13 36 36 H 1.08996 * 109.46987 * 60.00185 * 15 14 13 37 37 H 1.08999 * 109.50692 * 297.54206 * 17 16 15 38 38 H 1.09001 * 109.50545 * 57.67213 * 17 16 15 39 39 H 1.08996 * 109.50825 * 296.91062 * 18 17 16 40 40 H 1.09005 * 109.54273 * 176.80315 * 18 17 16 41 41 H 1.09004 * 109.50903 * 298.73622 * 20 19 18 42 42 H 1.08997 * 109.54252 * 178.62917 * 20 19 18 43 43 H 1.09005 * 109.51065 * 302.33411 * 21 16 15 44 44 H 1.09006 * 109.50062 * 62.41442 * 21 16 15 45 45 H 1.07996 * 120.02627 * 359.97438 * 23 22 10 46 46 H 1.07995 * 119.97706 * 180.23224 * 24 23 22 47 47 H 1.07999 * 119.98202 * 179.97438 * 27 25 24 48 48 H 1.08004 * 120.02345 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.6364 -4.1287 -1.1677 12 16 3.6462 -5.5111 -1.1700 13 7 2.2750 -3.5561 -2.3331 14 6 2.7468 -4.1166 -3.6018 15 6 2.1957 -3.2860 -4.7625 16 7 2.6692 -3.8476 -6.0347 17 6 4.1257 -3.6982 -6.1669 18 6 4.5832 -4.3482 -7.4754 19 8 3.8768 -3.7557 -8.5687 20 6 2.4556 -3.8833 -8.4725 21 6 1.9765 -3.2287 -7.1742 22 6 2.6577 -4.1449 1.2120 23 6 1.7868 -4.8500 2.0320 24 6 2.2389 -5.3786 3.2253 25 6 3.5569 -5.1964 3.6092 26 9 3.9956 -5.7092 4.7795 27 6 4.4256 -4.4892 2.7952 28 6 3.9789 -3.9634 1.5988 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8897 32 1 1.7026 -2.7730 -2.3319 33 1 3.8363 -4.0963 -3.6252 34 1 2.4003 -5.1459 -3.6955 35 1 1.1062 -3.3066 -4.7390 36 1 2.5417 -2.2566 -4.6691 37 1 4.3836 -2.6392 -6.1770 38 1 4.6194 -4.1857 -5.3263 39 1 4.3739 -5.4174 -7.4433 40 1 5.6539 -4.1907 -7.6058 41 1 2.1843 -4.9390 -8.4695 42 1 1.9868 -3.3895 -9.3236 43 1 0.9012 -3.3734 -7.0688 44 1 2.1993 -2.1620 -7.1998 45 1 0.7577 -4.9881 1.7353 46 1 1.5629 -5.9303 3.8616 47 1 5.4531 -4.3479 3.0966 48 1 4.6567 -3.4115 0.9644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025285301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:48 Heat of formation + Delta-G solvation = -31.901451 kcal Electronic energy + Delta-G solvation = -30687.519363 eV Core-core repulsion = 26397.443555 eV Total energy + Delta-G solvation = -4290.075808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.64474 -39.97402 -39.70166 -37.94060 -36.42130 -34.77843 -33.14507 -31.45681 -30.91199 -30.30628 -29.18185 -27.84630 -26.15828 -24.33640 -24.12592 -22.91009 -22.70423 -22.09959 -20.80669 -20.44793 -18.09299 -17.48168 -17.29736 -17.02628 -16.55533 -16.37802 -15.99414 -15.66808 -15.42403 -15.32174 -15.27888 -15.02574 -14.55313 -14.48778 -14.18390 -13.92113 -13.63610 -13.52844 -13.29880 -12.78498 -12.69142 -12.53120 -12.36875 -12.23299 -11.96035 -11.76314 -11.64166 -11.59343 -11.32796 -11.05929 -11.02005 -10.83129 -10.73030 -10.65843 -10.33710 -10.00044 -9.91160 -8.91115 -8.82026 -8.74866 -8.66755 -8.11642 -7.26650 -6.90285 -6.51155 -4.63284 1.31503 1.55908 2.03433 2.46823 2.96508 3.04545 3.11127 3.13787 3.49509 3.65361 3.85609 3.99758 4.09079 4.52003 4.56750 4.69915 4.73937 4.82127 4.90837 4.94974 5.01808 5.08435 5.09783 5.11814 5.30212 5.36486 5.44229 5.49958 5.54806 5.61704 5.64797 5.71691 5.73045 5.86819 5.95658 6.13185 6.26483 6.35935 6.44284 6.49877 6.63752 6.66862 6.69249 6.74450 6.89994 6.97641 7.03663 7.40397 7.57673 7.64544 7.77482 8.43481 9.06972 10.54385 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.008071 B = 0.002932 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3468.372522 B = 9548.827313 C =12055.248122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.226 3.774 10 N -0.514 5.514 11 C 0.583 3.417 12 S -0.694 6.694 13 N -0.679 5.679 14 C 0.132 3.868 15 C 0.041 3.959 16 N -0.529 5.529 17 C 0.010 3.990 18 C 0.064 3.936 19 O -0.388 6.388 20 C 0.065 3.935 21 C 0.018 3.982 22 C 0.166 3.834 23 C -0.083 4.083 24 C -0.146 4.146 25 C 0.091 3.909 26 F -0.145 7.145 27 C -0.145 4.145 28 C -0.050 4.050 29 H 0.271 0.729 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.411 0.589 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.131 0.869 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 -5.240 -8.301 10.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.133 4.133 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.589 4.589 8 H 0.083 0.917 9 C 0.106 3.894 10 N -0.217 5.217 11 C 0.222 3.778 12 S -0.566 6.566 13 N -0.310 5.310 14 C 0.008 3.992 15 C -0.087 4.087 16 N -0.255 5.255 17 C -0.118 4.118 18 C -0.013 4.013 19 O -0.307 6.307 20 C -0.012 4.012 21 C -0.111 4.111 22 C 0.075 3.925 23 C -0.103 4.103 24 C -0.166 4.166 25 C 0.072 3.928 26 F -0.124 7.124 27 C -0.165 4.165 28 C -0.069 4.069 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.251 0.749 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.149 0.851 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.569 -6.362 -8.506 10.928 hybrid contribution -0.399 2.855 0.520 2.929 sum 2.170 -3.507 -7.986 8.988 Atomic orbital electron populations 1.69892 1.06061 1.28129 1.48050 1.24926 0.94914 0.99511 0.93958 0.86468 0.79576 0.81929 0.79140 1.19978 1.20840 1.19722 1.21290 0.93706 0.89651 1.54302 0.91656 1.19872 0.87410 0.82442 0.99701 1.44882 1.42783 1.32640 1.01384 1.21929 0.85159 0.89143 0.81588 1.93173 1.47653 1.20557 1.95257 1.44901 1.50599 1.31453 1.04077 1.21478 1.00389 0.98282 0.79076 1.22279 1.01009 0.96725 0.88684 1.62046 1.04831 1.57163 1.01446 1.22935 0.88577 1.00423 0.99855 1.22680 0.96579 0.97192 0.84803 1.87979 1.18186 1.79441 1.45045 1.22651 0.81384 1.00673 0.96531 1.22803 0.99745 0.97317 0.91195 1.17194 0.93044 0.96437 0.85871 1.20897 1.00053 0.95628 0.93743 1.20806 0.94351 1.03385 0.98032 1.17633 0.93335 0.98757 0.83069 1.91459 1.90097 1.85285 1.45573 1.20861 1.00038 1.00612 0.94981 1.20953 0.94789 0.96594 0.94607 0.91947 0.94240 0.92815 0.74881 0.89952 0.89066 0.89757 0.93567 0.93687 0.88627 0.91988 0.88354 0.92118 0.88482 0.89389 0.93729 0.85062 0.84724 0.84756 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.11 13.29 55.43 0.74 -21.38 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 19.08 29.54 -169.99 -5.02 14.05 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.55 -12.86 9.34 -34.43 -0.32 -13.18 16 8 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.23 4.78 4.78 -5.19 -0.02 4.75 16 10 N -0.51 -9.92 2.50 -116.61 -0.29 -10.21 16 11 C 0.58 11.05 7.58 -86.92 -0.66 10.39 16 12 S -0.69 -14.48 27.30 -107.50 -2.93 -17.41 16 13 N -0.68 -11.08 5.40 -62.03 -0.33 -11.41 16 14 C 0.13 1.82 5.07 -4.04 -0.02 1.80 16 15 C 0.04 0.48 5.07 -3.82 -0.02 0.46 16 16 N -0.53 -5.69 4.73 -234.31 -1.11 -6.80 16 17 C 0.01 0.10 5.44 -3.72 -0.02 0.08 16 18 C 0.06 0.61 7.01 37.21 0.26 0.87 16 19 O -0.39 -4.21 10.83 -35.23 -0.38 -4.59 16 20 C 0.06 0.57 7.01 37.21 0.26 0.83 16 21 C 0.02 0.16 5.64 -3.71 -0.02 0.14 16 22 C 0.17 3.08 4.27 -83.67 -0.36 2.72 16 23 C -0.08 -1.37 9.72 -39.40 -0.38 -1.75 16 24 C -0.15 -2.18 10.02 -39.54 -0.40 -2.57 16 25 C 0.09 1.42 7.30 -39.41 -0.29 1.13 16 26 F -0.15 -2.19 17.26 2.25 0.04 -2.15 16 27 C -0.15 -2.27 10.02 -39.54 -0.40 -2.67 16 28 C -0.05 -0.88 8.98 -39.40 -0.35 -1.23 16 29 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 30 H 0.04 0.84 6.57 -51.93 -0.34 0.50 16 31 H 0.05 1.21 7.88 -51.93 -0.41 0.80 16 32 H 0.41 6.80 6.29 -40.82 -0.26 6.54 16 33 H 0.08 1.20 6.37 -51.93 -0.33 0.87 16 34 H 0.09 1.35 7.99 -51.93 -0.41 0.94 16 35 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 36 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 1.00 6.38 -51.93 -0.33 0.67 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 46 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 47 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 48 H 0.13 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 407.80 15.07 6.15 6.15 Total: -1.00 -28.00 407.80 -13.10 -41.11 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.12 Total: 9.24 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -2.84 Total: 3.41 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -1.00 Total: -49.80 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.38 Total: -4.59 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: -14.48 SS G_CDS: -2.93 Total: -17.41 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -28.00 -13.10 -41.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025285301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.204 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds