Wall clock time and date at job start Tue Mar 31 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00304 * 2 1 4 4 H 1.48503 * 109.47037 * 240.00253 * 3 2 1 5 5 H 1.48496 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46901 * 120.00440 * 3 2 1 7 7 C 1.37883 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99791 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46844 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99879 * 269.72048 * 10 9 7 12 12 S 1.71195 * 119.99886 * 185.05956 * 11 10 9 13 13 N 1.34779 * 119.99801 * 5.06416 * 11 10 9 14 14 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46996 * 179.97438 * 14 13 11 16 16 N 1.46901 * 109.47018 * 179.97438 * 15 14 13 17 17 C 1.47008 * 111.00380 * 293.63724 * 16 15 14 18 18 C 1.53095 * 109.25914 * 177.60677 * 17 16 15 19 19 O 1.43020 * 109.25891 * 56.85333 * 18 17 16 20 20 C 1.43015 * 113.73221 * 301.32652 * 19 18 17 21 21 C 1.47015 * 111.00038 * 169.99765 * 16 15 14 22 22 C 1.40013 * 120.00018 * 90.00335 * 10 9 7 23 23 C 1.38854 * 120.04583 * 68.73022 * 22 10 9 24 24 C 1.38118 * 119.95058 * 179.74904 * 23 22 10 25 25 C 1.38473 * 120.04525 * 0.52522 * 24 23 22 26 26 F 1.35097 * 119.95283 * 179.70909 * 25 24 23 27 27 C 1.38469 * 120.09269 * 359.72072 * 25 24 23 28 28 C 1.38116 * 120.04359 * 0.03148 * 27 25 24 29 29 H 0.97004 * 119.99739 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47005 * 60.00197 * 9 7 2 31 31 H 1.09005 * 109.46767 * 300.00361 * 9 7 2 32 32 H 0.96999 * 120.00263 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47143 * 299.99847 * 14 13 11 34 34 H 1.09006 * 109.47041 * 60.00131 * 14 13 11 35 35 H 1.08997 * 109.47293 * 300.00053 * 15 14 13 36 36 H 1.08996 * 109.46987 * 60.00185 * 15 14 13 37 37 H 1.08999 * 109.50692 * 297.54206 * 17 16 15 38 38 H 1.09001 * 109.50545 * 57.67213 * 17 16 15 39 39 H 1.08996 * 109.50825 * 296.91062 * 18 17 16 40 40 H 1.09005 * 109.54273 * 176.80315 * 18 17 16 41 41 H 1.09004 * 109.50903 * 298.73622 * 20 19 18 42 42 H 1.08997 * 109.54252 * 178.62917 * 20 19 18 43 43 H 1.09005 * 109.51065 * 302.33411 * 21 16 15 44 44 H 1.09006 * 109.50062 * 62.41442 * 21 16 15 45 45 H 1.07996 * 120.02627 * 359.97438 * 23 22 10 46 46 H 1.07995 * 119.97706 * 180.23224 * 24 23 22 47 47 H 1.07999 * 119.98202 * 179.97438 * 27 25 24 48 48 H 1.08004 * 120.02345 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.6364 -4.1287 -1.1677 12 16 3.6462 -5.5111 -1.1700 13 7 2.2750 -3.5561 -2.3331 14 6 2.7468 -4.1166 -3.6018 15 6 2.1957 -3.2860 -4.7625 16 7 2.6692 -3.8476 -6.0347 17 6 4.1257 -3.6982 -6.1669 18 6 4.5832 -4.3482 -7.4754 19 8 3.8768 -3.7557 -8.5687 20 6 2.4556 -3.8833 -8.4725 21 6 1.9765 -3.2287 -7.1742 22 6 2.6577 -4.1449 1.2120 23 6 1.7868 -4.8500 2.0320 24 6 2.2389 -5.3786 3.2253 25 6 3.5569 -5.1964 3.6092 26 9 3.9956 -5.7092 4.7795 27 6 4.4256 -4.4892 2.7952 28 6 3.9789 -3.9634 1.5988 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8897 32 1 1.7026 -2.7730 -2.3319 33 1 3.8363 -4.0963 -3.6252 34 1 2.4003 -5.1459 -3.6955 35 1 1.1062 -3.3066 -4.7390 36 1 2.5417 -2.2566 -4.6691 37 1 4.3836 -2.6392 -6.1770 38 1 4.6194 -4.1857 -5.3263 39 1 4.3739 -5.4174 -7.4433 40 1 5.6539 -4.1907 -7.6058 41 1 2.1843 -4.9390 -8.4695 42 1 1.9868 -3.3895 -9.3236 43 1 0.9012 -3.3734 -7.0688 44 1 2.1993 -2.1620 -7.1998 45 1 0.7577 -4.9881 1.7353 46 1 1.5629 -5.9303 3.8616 47 1 5.4531 -4.3479 3.0966 48 1 4.6567 -3.4115 0.9644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025285301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:47 Heat of formation + Delta-G solvation = -46.166384 kcal Electronic energy + Delta-G solvation = -30688.137937 eV Core-core repulsion = 26397.443555 eV Total energy + Delta-G solvation = -4290.694382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.86323 -41.32078 -40.59839 -39.22655 -37.48462 -36.01142 -34.92511 -32.21986 -32.17495 -31.42162 -30.69114 -29.25123 -27.19906 -25.85465 -25.05545 -24.18733 -23.99406 -23.27638 -22.11621 -21.36697 -19.45010 -18.96069 -18.71368 -18.55141 -17.54637 -17.35435 -17.18942 -16.76686 -16.62742 -16.53789 -16.42263 -16.02545 -15.79989 -15.63899 -15.34230 -15.26454 -14.91426 -14.58253 -14.54465 -14.28112 -13.98369 -13.78428 -13.56439 -13.29434 -13.24108 -13.10291 -13.04848 -12.72434 -12.60904 -12.41040 -12.35379 -12.13406 -12.02222 -11.93898 -11.69755 -11.49342 -10.75733 -10.70030 -10.14423 -10.09025 -9.54345 -9.49440 -8.90109 -8.52043 -8.34365 -6.52290 -0.02084 0.29143 0.54645 0.92672 1.35848 1.39904 1.45400 1.60308 2.20104 2.34366 2.58616 2.83670 2.96326 2.97893 3.26687 3.61964 3.77790 3.87473 3.91010 3.92743 4.01764 4.18226 4.22695 4.26000 4.30755 4.32410 4.38751 4.40437 4.57101 4.66573 4.70019 4.76632 4.77420 4.82554 4.88474 4.90784 4.90999 5.00795 5.10318 5.13048 5.20137 5.33759 5.50493 5.57522 5.74149 5.78005 5.79743 5.85325 6.16019 6.16946 6.30909 6.58206 7.20378 8.69171 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.008071 B = 0.002932 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3468.372522 B = 9548.827313 C =12055.248122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.037 3.963 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.554 4.554 8 H 0.054 0.946 9 C 0.242 3.758 10 N -0.512 5.512 11 C 0.586 3.414 12 S -0.730 6.730 13 N -0.668 5.668 14 C 0.139 3.861 15 C 0.052 3.948 16 N -0.534 5.534 17 C 0.011 3.989 18 C 0.066 3.934 19 O -0.405 6.405 20 C 0.063 3.937 21 C 0.017 3.983 22 C 0.137 3.863 23 C -0.091 4.091 24 C -0.137 4.137 25 C 0.090 3.910 26 F -0.140 7.140 27 C -0.142 4.142 28 C -0.065 4.065 29 H 0.272 0.728 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.412 0.588 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.041 0.959 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.039 0.961 45 H 0.141 0.859 46 H 0.166 0.834 47 H 0.157 0.843 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -5.224 -8.424 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.166 4.166 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.592 4.592 8 H 0.072 0.928 9 C 0.120 3.880 10 N -0.215 5.215 11 C 0.223 3.777 12 S -0.603 6.603 13 N -0.298 5.298 14 C 0.016 3.984 15 C -0.077 4.077 16 N -0.260 5.260 17 C -0.118 4.118 18 C -0.011 4.011 19 O -0.324 6.324 20 C -0.014 4.014 21 C -0.111 4.111 22 C 0.046 3.954 23 C -0.111 4.111 24 C -0.156 4.156 25 C 0.071 3.929 26 F -0.119 7.119 27 C -0.162 4.162 28 C -0.085 4.085 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.252 0.748 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.083 0.917 42 H 0.135 0.865 43 H 0.120 0.880 44 H 0.057 0.943 45 H 0.158 0.842 46 H 0.183 0.817 47 H 0.174 0.826 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.430 -6.351 -8.647 11.001 hybrid contribution -0.353 2.814 0.591 2.897 sum 2.077 -3.537 -8.056 9.040 Atomic orbital electron populations 1.69957 1.06976 1.28737 1.48949 1.25493 0.95476 1.01875 0.93773 0.85675 0.78519 0.79102 0.78875 1.19629 1.20496 1.20093 1.21402 0.93247 0.90727 1.53827 0.92760 1.19550 0.87260 0.82295 0.98892 1.44777 1.42506 1.32202 1.01980 1.21809 0.84985 0.88787 0.82147 1.93167 1.49387 1.22262 1.95504 1.45026 1.49645 1.30902 1.04215 1.21499 0.99947 0.98232 0.78753 1.22150 1.01368 0.95828 0.88305 1.62069 1.05153 1.57299 1.01463 1.22934 0.88447 1.00020 1.00351 1.22739 0.97336 0.97074 0.83959 1.87958 1.19300 1.79671 1.45460 1.22806 0.80543 1.01141 0.96877 1.22887 1.00431 0.96915 0.90846 1.17535 0.93933 0.97905 0.86061 1.21073 1.00314 0.95587 0.94108 1.21111 0.94614 1.02365 0.97489 1.17719 0.93580 0.98490 0.83120 1.91476 1.90068 1.85134 1.45198 1.21070 1.01233 0.99749 0.94113 1.20938 0.94523 0.97566 0.95497 0.91864 0.94231 0.94221 0.74802 0.90667 0.89776 0.88817 0.94043 0.94406 0.89114 0.91768 0.86957 0.91741 0.86486 0.88000 0.94303 0.84156 0.81657 0.82554 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.12 13.29 21.45 0.28 -44.83 16 2 C 0.04 1.74 5.46 84.66 0.46 2.20 16 3 Si 0.95 38.66 29.54 68.60 2.03 40.69 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.55 -25.86 9.34 25.60 0.24 -25.62 16 8 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 9 C 0.24 10.25 4.78 85.64 0.41 10.66 16 10 N -0.51 -19.92 2.50 -522.85 -1.31 -21.22 16 11 C 0.59 22.39 7.58 179.05 1.36 23.75 16 12 S -0.73 -30.73 27.30 -56.49 -1.54 -32.27 16 13 N -0.67 -21.85 5.40 -350.17 -1.89 -23.74 16 14 C 0.14 3.84 5.07 86.38 0.44 4.28 16 15 C 0.05 1.16 5.07 86.30 0.44 1.60 16 16 N -0.53 -11.03 4.73 -895.23 -4.23 -15.26 16 17 C 0.01 0.21 5.44 86.31 0.47 0.68 16 18 C 0.07 1.18 7.01 72.01 0.50 1.69 16 19 O -0.40 -8.27 10.83 -148.98 -1.61 -9.89 16 20 C 0.06 1.00 7.01 72.01 0.50 1.50 16 21 C 0.02 0.29 5.64 86.31 0.49 0.78 16 22 C 0.14 5.07 4.27 38.13 0.16 5.23 16 23 C -0.09 -2.93 9.72 22.39 0.22 -2.71 16 24 C -0.14 -3.81 10.02 22.30 0.22 -3.58 16 25 C 0.09 2.63 7.30 22.38 0.16 2.80 16 26 F -0.14 -3.89 17.26 44.97 0.78 -3.11 16 27 C -0.14 -4.30 10.02 22.30 0.22 -4.08 16 28 C -0.07 -2.32 8.98 22.39 0.20 -2.11 16 29 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 30 H 0.04 1.68 6.57 -2.39 -0.02 1.67 16 31 H 0.04 1.81 7.88 -2.38 -0.02 1.79 16 32 H 0.41 13.58 6.29 -92.71 -0.58 13.00 16 33 H 0.08 2.22 6.37 -2.39 -0.02 2.20 16 34 H 0.08 2.49 7.99 -2.38 -0.02 2.47 16 35 H 0.09 1.93 8.04 -2.39 -0.02 1.91 16 36 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 37 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 1.91 6.38 -2.39 -0.02 1.89 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 1.65 8.14 -2.38 -0.02 1.64 16 41 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.10 1.47 8.09 -2.38 -0.02 1.45 16 44 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 46 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 47 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 48 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -58.50 407.80 -0.61 -59.10 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 0.39 Total: 33.47 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 6.50 Total: 17.07 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -7.14 Total: -105.05 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.61 Total: -9.89 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 16 Polarization: -30.73 SS G_CDS: -1.54 Total: -32.27 kcal Total: -58.50 -0.61 -59.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025285301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.937 kcal (2) G-P(sol) polarization free energy of solvation -58.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds