Wall clock time and date at job start Tue Mar 31 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38373 * 119.84325 * 2 1 4 4 C 1.37929 * 120.16054 * 179.97438 * 3 2 1 5 5 C 1.39694 * 119.83760 * 0.02562 * 4 3 2 6 6 C 1.47477 * 120.15386 * 180.02562 * 5 4 3 7 7 N 1.29777 * 119.99955 * 180.02562 * 6 5 4 8 8 N 1.40094 * 120.00336 * 174.79153 * 7 6 5 9 9 C 1.46502 * 120.00015 * 4.76512 * 8 7 6 10 10 C 1.50700 * 109.47376 * 89.91988 * 9 8 7 11 11 H 1.07999 * 119.99712 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99835 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00155 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47284 * 59.99866 * 14 12 10 16 16 H 1.48498 * 109.47166 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47135 * 299.99558 * 14 12 10 18 18 C 1.34776 * 120.00427 * 184.75846 * 8 7 6 19 19 O 1.21591 * 120.00360 * 183.75691 * 18 8 7 20 20 C 1.47788 * 119.99786 * 3.76175 * 18 8 7 21 21 C 1.39605 * 120.14797 * 335.44216 * 20 18 8 22 22 C 1.37953 * 119.84911 * 179.69844 * 21 20 18 23 23 C 1.38367 * 120.14472 * 0.57459 * 22 21 20 24 24 N 1.48022 * 119.84562 * 179.69688 * 23 22 21 25 25 O 1.21799 * 119.99320 * 180.02562 * 24 23 22 26 26 O 1.21791 * 120.00150 * 0.02562 * 24 23 22 27 27 C 1.38361 * 120.30200 * 359.72021 * 23 22 21 28 28 C 1.37957 * 120.14403 * 359.97438 * 27 23 22 29 29 C 1.39687 * 119.68988 * 359.97438 * 5 4 3 30 30 C 1.37934 * 119.84006 * 0.02562 * 29 5 4 31 31 H 1.09000 * 109.47317 * 90.00050 * 1 2 3 32 32 H 1.09003 * 109.47120 * 209.99977 * 1 2 3 33 33 H 1.09006 * 109.47148 * 330.00052 * 1 2 3 34 34 H 1.08004 * 119.91933 * 359.97438 * 3 2 1 35 35 H 1.07995 * 120.07925 * 179.74550 * 4 3 2 36 36 H 1.07994 * 119.99789 * 359.97438 * 6 5 4 37 37 H 1.08997 * 109.47376 * 209.92816 * 9 8 7 38 38 H 1.09004 * 109.46851 * 329.92521 * 9 8 7 39 39 H 0.97003 * 120.00088 * 180.02562 * 13 12 10 40 40 H 1.07998 * 120.07020 * 359.97261 * 21 20 18 41 41 H 1.07997 * 119.92571 * 180.27179 * 22 21 20 42 42 H 1.07997 * 119.92890 * 179.97438 * 27 23 22 43 43 H 1.08000 * 120.07077 * 180.02562 * 28 27 23 44 44 H 1.08001 * 120.08229 * 180.02562 * 29 5 4 45 45 H 1.08002 * 119.92152 * 180.02562 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2002 0.0000 4 6 3.5748 1.2079 0.0005 5 6 4.2766 0.0000 0.0005 6 6 5.7513 0.0000 0.0017 7 7 6.4002 -1.1239 0.0012 8 7 7.7969 -1.1264 -0.1079 9 6 8.5333 0.1401 -0.1162 10 6 8.8945 0.5205 1.2965 11 1 8.6049 -0.1175 2.1184 12 6 9.5946 1.6831 1.5399 13 7 9.9468 2.4603 0.5391 14 14 10.0430 2.1543 3.2909 15 1 10.8927 1.0923 3.8872 16 1 10.7882 3.4387 3.2826 17 1 8.8039 2.3067 4.0953 18 6 8.4633 -2.2938 -0.2050 19 8 9.6789 -2.2998 -0.2308 20 6 7.7164 -3.5669 -0.2803 21 6 6.4253 -3.6543 0.2435 22 6 5.7313 -4.8440 0.1643 23 6 6.3167 -5.9522 -0.4219 24 7 5.5686 -7.2272 -0.4973 25 8 6.0815 -8.2046 -1.0123 26 8 4.4403 -7.2990 -0.0443 27 6 7.5983 -5.8741 -0.9375 28 6 8.3010 -4.6888 -0.8705 29 6 3.5749 -1.2079 0.0005 30 6 2.1955 -1.2003 0.0000 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6517 2.1333 -0.0004 35 1 4.1109 2.1454 -0.0036 36 1 6.2913 0.9353 0.0021 37 1 9.4429 0.0277 -0.7062 38 1 7.9101 0.9198 -0.5543 39 1 10.4397 3.2781 0.7102 40 1 5.9692 -2.7913 0.7056 41 1 4.7308 -4.9118 0.5651 42 1 8.0496 -6.7430 -1.3933 43 1 9.3011 -4.6291 -1.2737 44 1 4.1110 -2.1454 0.0010 45 1 1.6517 -2.1333 0.0004 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027745797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:22 Heat of formation + Delta-G solvation = 65.516638 kcal Electronic energy + Delta-G solvation = -31863.680488 eV Core-core repulsion = 27430.012305 eV Total energy + Delta-G solvation = -4433.668184 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.25518 -40.24154 -39.38745 -38.46102 -36.71550 -36.64591 -33.86095 -33.04359 -32.16358 -31.56252 -31.20486 -30.83038 -28.28458 -27.26360 -26.44896 -23.84824 -23.41697 -22.96307 -22.71810 -22.13523 -20.62049 -19.46751 -19.07481 -18.73745 -17.87183 -17.61370 -16.90598 -16.50232 -15.92600 -15.55094 -15.23172 -15.10415 -14.88047 -14.79873 -14.59735 -14.23288 -13.96412 -13.88173 -13.45504 -13.27659 -13.19157 -13.14663 -12.69152 -12.45095 -12.40335 -11.84364 -11.67241 -11.62306 -11.52252 -11.37189 -11.28863 -11.22922 -11.18865 -11.03692 -10.84933 -10.52805 -9.96723 -9.95393 -9.67191 -9.52917 -9.36150 -9.01250 -8.93313 -8.70578 -7.73085 -6.32561 -4.40665 -0.39204 0.74287 0.88461 1.13968 1.30568 1.36419 2.30338 2.81442 2.93096 3.16766 3.21890 3.25598 3.59119 3.86379 4.08006 4.22785 4.29749 4.37046 4.69036 4.72139 4.76477 4.84317 4.86274 4.98428 5.02382 5.13365 5.20495 5.34452 5.39150 5.48745 5.51809 5.60561 5.62156 5.66209 5.83815 5.89376 5.97641 6.01041 6.10296 6.22820 6.37568 6.41122 6.48979 6.52051 6.64370 6.89404 6.95746 7.41933 7.55726 7.61599 7.81910 7.96019 8.49919 8.69384 9.26902 10.75174 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.005594 B = 0.003864 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5004.139836 B = 7244.132452 C =11554.812128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C -0.124 4.124 4 C -0.084 4.084 5 C -0.049 4.049 6 C 0.119 3.881 7 N -0.269 5.269 8 N -0.436 5.436 9 C 0.217 3.783 10 C -0.539 4.539 11 H 0.060 0.940 12 C 0.069 3.931 13 N -0.889 5.889 14 Si 0.902 3.098 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.571 3.429 19 O -0.504 6.504 20 C -0.065 4.065 21 C -0.071 4.071 22 C -0.072 4.072 23 C -0.033 4.033 24 N 0.030 4.970 25 O -0.165 6.165 26 O -0.162 6.162 27 C -0.069 4.069 28 C -0.069 4.069 29 C -0.085 4.085 30 C -0.126 4.126 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.268 0.732 40 H 0.182 0.818 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.129 0.871 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.880 -6.574 -3.019 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.104 4.104 5 C -0.051 4.051 6 C -0.089 4.089 7 N -0.075 5.075 8 N -0.254 5.254 9 C 0.097 3.903 10 C -0.577 4.577 11 H 0.078 0.922 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.729 3.271 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.200 1.200 18 C 0.359 3.641 19 O -0.377 6.377 20 C -0.068 4.068 21 C -0.090 4.090 22 C -0.091 4.091 23 C -0.116 4.116 24 N 0.548 4.452 25 O -0.380 6.380 26 O -0.378 6.378 27 C -0.089 4.089 28 C -0.089 4.089 29 C -0.105 4.105 30 C -0.144 4.144 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.199 0.801 41 H 0.172 0.828 42 H 0.173 0.827 43 H 0.174 0.826 44 H 0.147 0.853 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.555 -6.766 -3.021 16.333 hybrid contribution 0.453 0.864 0.947 1.360 sum -14.102 -5.902 -2.074 15.427 Atomic orbital electron populations 1.20819 0.91319 1.02794 1.02305 1.20041 0.96042 0.93261 0.98682 1.20927 0.93863 0.97587 1.01871 1.21295 0.94079 0.97403 0.97649 1.18491 0.89992 0.93771 1.02888 1.24591 0.92816 0.96624 0.94883 1.73950 0.93001 1.26591 1.13945 1.49313 1.00846 1.08785 1.66427 1.19865 0.92726 0.78418 0.99250 1.21216 1.37651 1.07182 0.91679 0.92203 1.24907 0.94882 0.95828 0.97877 1.69902 1.38155 1.13526 1.31033 0.86483 0.78843 0.77921 0.83871 1.19946 1.20873 1.19977 1.17686 0.86523 0.82298 0.77629 1.90856 1.12463 1.85858 1.48479 1.20587 0.94683 0.94629 0.96930 1.22461 0.92673 0.97565 0.96351 1.21125 1.01525 0.90329 0.96098 1.21356 0.94912 0.84863 1.10485 1.43691 1.00815 1.02705 0.97949 1.94527 1.71436 1.27396 1.44663 1.94524 1.03878 1.90854 1.48540 1.20927 0.91315 0.99657 0.96955 1.21326 1.00600 0.89874 0.97051 1.21395 0.93915 0.97812 0.97371 1.20981 0.94013 0.97599 1.01846 0.91156 0.91510 0.91535 0.85782 0.85057 0.84055 0.92401 0.93911 0.92192 0.80107 0.82753 0.82655 0.82645 0.85320 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.00 36.00 0.36 -0.41 16 2 C -0.08 -0.73 5.89 -104.52 -0.62 -1.35 16 3 C -0.12 -1.19 9.68 -39.64 -0.38 -1.58 16 4 C -0.08 -0.93 9.79 -39.15 -0.38 -1.31 16 5 C -0.05 -0.62 5.87 -105.05 -0.62 -1.24 16 6 C 0.12 1.84 10.15 -14.66 -0.15 1.69 16 7 N -0.27 -4.47 6.59 32.16 0.21 -4.25 16 8 N -0.44 -8.82 3.48 -62.44 -0.22 -9.03 16 9 C 0.22 5.17 4.65 -5.19 -0.02 5.15 16 10 C -0.54 -14.12 9.39 -34.44 -0.32 -14.45 16 11 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 12 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 13 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 14 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.57 11.31 7.57 -12.36 -0.09 11.22 16 19 O -0.50 -11.61 16.21 5.29 0.09 -11.52 16 20 C -0.06 -1.00 5.78 -104.97 -0.61 -1.60 16 21 C -0.07 -0.95 8.61 -39.18 -0.34 -1.29 16 22 C -0.07 -0.84 9.54 -39.64 -0.38 -1.22 16 23 C -0.03 -0.42 6.86 -79.85 -0.55 -0.97 16 24 N 0.03 0.41 4.45 34.01 0.15 0.56 16 25 O -0.17 -2.34 18.43 -29.46 -0.54 -2.88 16 26 O -0.16 -2.28 18.43 -29.46 -0.54 -2.83 16 27 C -0.07 -0.81 9.54 -39.64 -0.38 -1.19 16 28 C -0.07 -0.90 9.59 -39.18 -0.38 -1.27 16 29 C -0.08 -0.97 9.58 -39.15 -0.38 -1.34 16 30 C -0.13 -1.24 9.68 -39.64 -0.38 -1.62 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.39 8.08 -51.93 -0.42 -0.02 16 33 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.14 2.40 5.89 -52.49 -0.31 2.09 16 37 H 0.06 1.55 7.47 -51.93 -0.39 1.16 16 38 H 0.04 1.00 6.09 -51.93 -0.32 0.69 16 39 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.18 2.46 4.23 -52.49 -0.22 2.24 16 41 H 0.15 1.49 7.60 -52.49 -0.40 1.10 16 42 H 0.16 1.48 7.60 -52.49 -0.40 1.09 16 43 H 0.16 1.87 7.84 -52.49 -0.41 1.46 16 44 H 0.13 1.39 6.34 -52.49 -0.33 1.06 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -30.36 397.04 -9.72 -40.08 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.85 Total: 2.96 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -5.71 Total: -11.05 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.88 Total: -36.31 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -1.00 Total: -17.23 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.36 -9.72 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027745797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.592 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds