Wall clock time and date at job start Tue Mar 31 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38373 * 119.84325 * 2 1 4 4 C 1.37929 * 120.16054 * 179.97438 * 3 2 1 5 5 C 1.39694 * 119.83760 * 0.02562 * 4 3 2 6 6 C 1.47477 * 120.15386 * 180.02562 * 5 4 3 7 7 N 1.29777 * 119.99955 * 180.02562 * 6 5 4 8 8 N 1.40094 * 120.00336 * 174.79153 * 7 6 5 9 9 C 1.46502 * 120.00015 * 4.76512 * 8 7 6 10 10 C 1.50700 * 109.47376 * 89.91988 * 9 8 7 11 11 H 1.07999 * 119.99712 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99835 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00155 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47284 * 59.99866 * 14 12 10 16 16 H 1.48498 * 109.47166 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47135 * 299.99558 * 14 12 10 18 18 C 1.34776 * 120.00427 * 184.75846 * 8 7 6 19 19 O 1.21591 * 120.00360 * 183.75691 * 18 8 7 20 20 C 1.47788 * 119.99786 * 3.76175 * 18 8 7 21 21 C 1.39605 * 120.14797 * 335.44216 * 20 18 8 22 22 C 1.37953 * 119.84911 * 179.69844 * 21 20 18 23 23 C 1.38367 * 120.14472 * 0.57459 * 22 21 20 24 24 N 1.48022 * 119.84562 * 179.69688 * 23 22 21 25 25 O 1.21799 * 119.99320 * 180.02562 * 24 23 22 26 26 O 1.21791 * 120.00150 * 0.02562 * 24 23 22 27 27 C 1.38361 * 120.30200 * 359.72021 * 23 22 21 28 28 C 1.37957 * 120.14403 * 359.97438 * 27 23 22 29 29 C 1.39687 * 119.68988 * 359.97438 * 5 4 3 30 30 C 1.37934 * 119.84006 * 0.02562 * 29 5 4 31 31 H 1.09000 * 109.47317 * 90.00050 * 1 2 3 32 32 H 1.09003 * 109.47120 * 209.99977 * 1 2 3 33 33 H 1.09006 * 109.47148 * 330.00052 * 1 2 3 34 34 H 1.08004 * 119.91933 * 359.97438 * 3 2 1 35 35 H 1.07995 * 120.07925 * 179.74550 * 4 3 2 36 36 H 1.07994 * 119.99789 * 359.97438 * 6 5 4 37 37 H 1.08997 * 109.47376 * 209.92816 * 9 8 7 38 38 H 1.09004 * 109.46851 * 329.92521 * 9 8 7 39 39 H 0.97003 * 120.00088 * 180.02562 * 13 12 10 40 40 H 1.07998 * 120.07020 * 359.97261 * 21 20 18 41 41 H 1.07997 * 119.92571 * 180.27179 * 22 21 20 42 42 H 1.07997 * 119.92890 * 179.97438 * 27 23 22 43 43 H 1.08000 * 120.07077 * 180.02562 * 28 27 23 44 44 H 1.08001 * 120.08229 * 180.02562 * 29 5 4 45 45 H 1.08002 * 119.92152 * 180.02562 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2002 0.0000 4 6 3.5748 1.2079 0.0005 5 6 4.2766 0.0000 0.0005 6 6 5.7513 0.0000 0.0017 7 7 6.4002 -1.1239 0.0012 8 7 7.7969 -1.1264 -0.1079 9 6 8.5333 0.1401 -0.1162 10 6 8.8945 0.5205 1.2965 11 1 8.6049 -0.1175 2.1184 12 6 9.5946 1.6831 1.5399 13 7 9.9468 2.4603 0.5391 14 14 10.0430 2.1543 3.2909 15 1 10.8927 1.0923 3.8872 16 1 10.7882 3.4387 3.2826 17 1 8.8039 2.3067 4.0953 18 6 8.4633 -2.2938 -0.2050 19 8 9.6789 -2.2998 -0.2308 20 6 7.7164 -3.5669 -0.2803 21 6 6.4253 -3.6543 0.2435 22 6 5.7313 -4.8440 0.1643 23 6 6.3167 -5.9522 -0.4219 24 7 5.5686 -7.2272 -0.4973 25 8 6.0815 -8.2046 -1.0123 26 8 4.4403 -7.2990 -0.0443 27 6 7.5983 -5.8741 -0.9375 28 6 8.3010 -4.6888 -0.8705 29 6 3.5749 -1.2079 0.0005 30 6 2.1955 -1.2003 0.0000 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6517 2.1333 -0.0004 35 1 4.1109 2.1454 -0.0036 36 1 6.2913 0.9353 0.0021 37 1 9.4429 0.0277 -0.7062 38 1 7.9101 0.9198 -0.5543 39 1 10.4397 3.2781 0.7102 40 1 5.9692 -2.7913 0.7056 41 1 4.7308 -4.9118 0.5651 42 1 8.0496 -6.7430 -1.3933 43 1 9.3011 -4.6291 -1.2737 44 1 4.1110 -2.1454 0.0010 45 1 1.6517 -2.1333 0.0004 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027745797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:21 Heat of formation + Delta-G solvation = 51.932746 kcal Electronic energy + Delta-G solvation = -31864.269530 eV Core-core repulsion = 27430.012305 eV Total energy + Delta-G solvation = -4434.257226 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.31784 -41.57702 -40.25671 -39.71625 -38.13838 -37.72564 -35.36529 -34.56885 -33.33861 -32.57764 -32.30070 -31.76360 -29.96928 -28.21044 -27.63949 -25.56242 -24.50434 -24.03508 -23.59509 -23.28652 -21.67301 -20.53490 -20.37205 -19.80832 -19.20918 -18.85270 -18.66897 -17.89993 -17.08246 -16.76914 -16.60359 -16.38456 -15.97963 -15.85605 -15.79776 -15.57217 -14.98359 -14.68179 -14.54702 -14.40351 -14.24474 -14.14209 -14.08454 -13.75363 -13.51554 -13.23334 -12.92826 -12.80519 -12.70654 -12.67432 -12.58636 -12.42553 -12.33714 -12.31415 -12.19616 -11.83002 -11.78021 -11.43619 -10.98126 -10.77454 -10.72223 -10.45398 -10.17047 -9.82283 -9.01215 -8.35418 -6.52356 -1.48646 -0.28639 -0.10929 0.05202 0.25008 0.55755 1.14150 1.32064 1.34948 1.37537 1.45027 1.71416 2.28096 2.37781 2.79828 2.96072 2.97089 3.30917 3.42430 3.56849 3.75625 3.77285 3.94194 4.07572 4.15325 4.23247 4.27754 4.47973 4.54013 4.57258 4.60750 4.66444 4.71122 4.78188 4.90210 4.93636 4.94702 4.97583 5.01725 5.11958 5.23197 5.33816 5.35501 5.49212 5.52329 5.59371 5.73394 5.80784 5.96601 6.10222 6.45812 6.46465 6.52068 7.06194 7.23096 8.71056 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.005594 B = 0.003864 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5004.139836 B = 7244.132452 C =11554.812128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.071 4.071 3 C -0.128 4.128 4 C -0.088 4.088 5 C -0.077 4.077 6 C 0.135 3.865 7 N -0.269 5.269 8 N -0.448 5.448 9 C 0.232 3.768 10 C -0.551 4.551 11 H 0.048 0.952 12 C 0.024 3.976 13 N -0.917 5.917 14 Si 0.963 3.037 15 H -0.279 1.279 16 H -0.274 1.274 17 H -0.262 1.262 18 C 0.565 3.435 19 O -0.553 6.553 20 C -0.082 4.082 21 C -0.066 4.066 22 C -0.057 4.057 23 C -0.034 4.034 24 N 0.030 4.970 25 O -0.173 6.173 26 O -0.162 6.162 27 C -0.056 4.056 28 C -0.065 4.065 29 C -0.087 4.087 30 C -0.131 4.131 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.135 0.865 36 H 0.122 0.878 37 H 0.018 0.982 38 H 0.041 0.959 39 H 0.272 0.728 40 H 0.179 0.821 41 H 0.181 0.819 42 H 0.180 0.820 43 H 0.161 0.839 44 H 0.131 0.869 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.248 -7.449 -2.264 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.072 4.072 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.079 4.079 6 C -0.073 4.073 7 N -0.075 5.075 8 N -0.264 5.264 9 C 0.110 3.890 10 C -0.590 4.590 11 H 0.067 0.933 12 C -0.178 4.178 13 N -0.555 5.555 14 Si 0.787 3.213 15 H -0.205 1.205 16 H -0.198 1.198 17 H -0.186 1.186 18 C 0.355 3.645 19 O -0.430 6.430 20 C -0.085 4.085 21 C -0.086 4.086 22 C -0.076 4.076 23 C -0.117 4.117 24 N 0.548 4.452 25 O -0.387 6.387 26 O -0.379 6.379 27 C -0.074 4.074 28 C -0.085 4.085 29 C -0.107 4.107 30 C -0.148 4.148 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.139 0.861 37 H 0.036 0.964 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.196 0.804 41 H 0.198 0.802 42 H 0.198 0.802 43 H 0.178 0.822 44 H 0.149 0.851 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.964 -7.655 -2.275 19.659 hybrid contribution 1.261 1.172 0.668 1.847 sum -16.703 -6.483 -1.607 17.989 Atomic orbital electron populations 1.20900 0.89041 1.03970 1.03327 1.20471 0.97731 0.92820 0.96189 1.21235 0.93146 0.99033 1.01206 1.21467 0.95078 0.97008 0.97288 1.18435 0.87979 0.95311 1.06211 1.24905 0.94574 0.95530 0.92257 1.74168 0.90331 1.26338 1.16641 1.49261 1.02432 1.07696 1.66995 1.19340 0.91672 0.80409 0.97550 1.21397 1.37981 1.07258 0.92317 0.93348 1.25704 0.94614 0.95717 1.01734 1.69997 1.38667 1.13925 1.32915 0.85533 0.78894 0.77595 0.79273 1.20498 1.19822 1.18605 1.18385 0.86332 0.83466 0.76353 1.90804 1.14542 1.86683 1.50986 1.20323 0.95559 0.93056 0.99594 1.22319 0.91846 0.98195 0.96194 1.21263 1.02215 0.89103 0.95001 1.21495 0.95141 0.84622 1.10478 1.43779 1.00796 1.02851 0.97794 1.94533 1.71476 1.27698 1.44966 1.94521 1.04021 1.90927 1.48448 1.21092 0.90820 0.99610 0.95922 1.21363 1.00907 0.89556 0.96662 1.21510 0.94861 0.97277 0.97011 1.21279 0.93301 0.99019 1.01231 0.90039 0.90403 0.90412 0.83398 0.84733 0.86082 0.96378 0.94132 0.91893 0.80434 0.80206 0.80246 0.82176 0.85068 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.00 71.24 0.71 -0.36 16 2 C -0.07 -1.08 5.89 -19.80 -0.12 -1.20 16 3 C -0.13 -2.14 9.68 22.23 0.22 -1.92 16 4 C -0.09 -1.87 9.79 22.55 0.22 -1.65 16 5 C -0.08 -1.92 5.87 -20.14 -0.12 -2.04 16 6 C 0.13 4.35 10.15 87.43 0.89 5.24 16 7 N -0.27 -9.32 6.59 -52.16 -0.34 -9.67 16 8 N -0.45 -19.30 3.48 -469.73 -1.63 -20.94 16 9 C 0.23 11.87 4.65 85.63 0.40 12.27 16 10 C -0.55 -30.33 9.39 25.60 0.24 -30.09 16 11 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 12 C 0.02 1.28 5.46 84.65 0.46 1.74 16 13 N -0.92 -51.90 13.29 21.45 0.28 -51.62 16 14 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 18 C 0.56 23.79 7.57 86.77 0.66 24.45 16 19 O -0.55 -27.43 16.21 -4.00 -0.06 -27.49 16 20 C -0.08 -2.57 5.78 -20.09 -0.12 -2.69 16 21 C -0.07 -1.73 8.61 22.53 0.19 -1.54 16 22 C -0.06 -1.21 9.54 22.23 0.21 -1.00 16 23 C -0.03 -0.79 6.86 36.43 0.25 -0.54 16 24 N 0.03 0.75 4.45 -46.32 -0.21 0.54 16 25 O -0.17 -4.51 18.43 18.89 0.35 -4.16 16 26 O -0.16 -4.14 18.43 18.90 0.35 -3.79 16 27 C -0.06 -1.19 9.54 22.23 0.21 -0.98 16 28 C -0.07 -1.68 9.59 22.53 0.22 -1.47 16 29 C -0.09 -1.84 9.58 22.55 0.22 -1.62 16 30 C -0.13 -2.17 9.68 22.23 0.22 -1.96 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 33 H 0.08 0.58 8.08 -2.38 -0.02 0.56 16 34 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.12 4.42 5.89 -2.91 -0.02 4.40 16 37 H 0.02 1.06 7.47 -2.39 -0.02 1.04 16 38 H 0.04 2.06 6.09 -2.38 -0.01 2.04 16 39 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.18 4.79 4.23 -2.91 -0.01 4.78 16 41 H 0.18 2.89 7.60 -2.91 -0.02 2.87 16 42 H 0.18 2.96 7.60 -2.91 -0.02 2.94 16 43 H 0.16 3.93 7.84 -2.91 -0.02 3.91 16 44 H 0.13 2.65 6.34 -2.91 -0.02 2.63 16 45 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -68.75 397.04 6.77 -61.98 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.05 Total: 15.58 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 4.96 Total: -5.35 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.90 Total: -81.68 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: 0.63 Total: -35.45 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -68.75 6.77 -61.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027745797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.910 kcal (2) G-P(sol) polarization free energy of solvation -68.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds