Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30607 * 1 3 3 Si 1.86798 * 120.00190 * 2 1 4 4 H 1.48493 * 109.47093 * 239.99774 * 3 2 1 5 5 H 1.48500 * 109.46862 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46894 * 119.99766 * 3 2 1 7 7 C 1.40199 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.40686 * 120.00297 * 0.02562 * 7 2 1 10 10 O 1.21977 * 119.99931 * 0.02562 * 9 7 2 11 11 N 1.34782 * 119.99841 * 180.02562 * 9 7 2 12 12 N 1.40106 * 119.99627 * 179.97438 * 11 9 7 13 13 C 1.30698 * 119.99819 * 180.02562 * 12 11 9 14 14 C 1.46736 * 119.99826 * 180.02562 * 13 12 11 15 15 C 1.40260 * 120.12372 * 179.97438 * 14 13 12 16 16 C 1.36592 * 119.87145 * 180.02562 * 15 14 13 17 17 C 1.39207 * 120.12626 * 0.02562 * 16 15 14 18 18 O 1.35686 * 119.87379 * 179.97438 * 17 16 15 19 19 C 1.42898 * 117.00144 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47173 * 180.02562 * 19 18 17 21 21 O 1.21286 * 119.99973 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00040 * 180.02562 * 20 19 18 23 23 C 1.39928 * 120.00112 * 175.37507 * 22 20 19 24 24 C 1.38868 * 120.07151 * 214.81167 * 23 22 20 25 25 C 1.38109 * 119.92757 * 179.74576 * 24 23 22 26 26 C 1.38287 * 120.07302 * 0.53004 * 25 24 23 27 27 C 1.38280 * 120.13551 * 359.74610 * 26 25 24 28 28 C 1.38113 * 120.07528 * 359.97438 * 27 26 25 29 29 C 1.39205 * 120.25195 * 359.97046 * 17 16 15 30 30 C 1.36591 * 120.12909 * 0.05299 * 29 17 16 31 31 H 0.96998 * 119.99677 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00119 * 0.02562 * 11 9 7 33 33 H 1.08001 * 119.99523 * 359.97438 * 13 12 11 34 34 H 1.08004 * 120.06506 * 0.29179 * 15 14 13 35 35 H 1.07993 * 119.93689 * 180.02562 * 16 15 14 36 36 H 1.08999 * 109.47026 * 300.00119 * 19 18 17 37 37 H 1.09004 * 109.46686 * 59.99923 * 19 18 17 38 38 H 0.97000 * 119.99936 * 355.38107 * 22 20 19 39 39 H 1.07995 * 120.03588 * 0.02562 * 24 23 22 40 40 H 1.08000 * 119.96661 * 180.26996 * 25 24 23 41 41 H 1.07992 * 119.93288 * 179.71564 * 26 25 24 42 42 H 1.08009 * 119.96342 * 179.97438 * 27 26 25 43 43 H 1.08004 * 120.03806 * 180.02562 * 28 27 26 44 44 H 1.07997 * 119.92924 * 180.02562 * 29 17 16 45 45 H 1.07997 * 120.06119 * 179.97438 * 30 29 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0939 1.6963 -1.2124 5 1 1.2751 2.7464 0.0006 6 1 3.0938 1.6963 1.2126 7 6 2.0070 -1.2142 -0.0005 8 1 3.0870 -1.2143 -0.0001 9 6 1.3035 -2.4326 -0.0016 10 8 0.0838 -2.4325 -0.0026 11 7 1.9775 -3.5998 -0.0016 12 7 1.2769 -4.8131 -0.0022 13 6 1.9303 -5.9450 -0.0017 14 6 1.1966 -7.2157 -0.0028 15 6 1.8952 -8.4320 -0.0028 16 6 1.2070 -9.6118 -0.0044 17 6 -0.1851 -9.6087 -0.0066 18 8 -0.8635 -10.7838 -0.0087 19 6 -2.2906 -10.7089 -0.0102 20 6 -2.8666 -12.1015 -0.0118 21 8 -2.1278 -13.0633 -0.0111 22 7 -4.2027 -12.2780 -0.0140 23 6 -4.7380 -13.5671 -0.1132 24 6 -5.9220 -13.7774 -0.8077 25 6 -6.4448 -15.0517 -0.9082 26 6 -5.7965 -16.1160 -0.3088 27 6 -4.6204 -15.9090 0.3883 28 6 -4.0893 -14.6379 0.4877 29 6 -0.8837 -8.4047 -0.0065 30 6 -0.2059 -7.2188 -0.0054 31 1 -0.4849 0.8401 -0.0004 32 1 2.9475 -3.5998 -0.0005 33 1 3.0104 -5.9449 -0.0013 34 1 2.9752 -8.4356 0.0028 35 1 1.7438 -10.5489 -0.0040 36 1 -2.6275 -10.1778 0.8799 37 1 -2.6254 -10.1758 -0.9001 38 1 -4.7934 -11.5115 0.0531 39 1 -6.4309 -12.9460 -1.2727 40 1 -7.3633 -15.2166 -1.4520 41 1 -6.2098 -17.1108 -0.3850 42 1 -4.1166 -16.7422 0.8558 43 1 -3.1704 -14.4770 1.0320 44 1 -1.9636 -8.4083 -0.0077 45 1 -0.7490 -6.2853 -0.0057 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028214264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -4.116044 kcal Electronic energy + Delta-G solvation = -29307.209949 eV Core-core repulsion = 24870.522265 eV Total energy + Delta-G solvation = -4436.687684 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.13148 -40.12593 -38.80925 -37.83781 -37.30963 -35.27306 -35.04336 -32.69767 -31.69049 -31.32002 -31.17097 -30.72456 -29.16924 -28.00867 -26.44585 -23.66207 -23.42206 -23.08666 -22.29069 -20.93510 -20.59971 -19.68800 -18.59926 -18.41724 -17.64974 -17.25623 -16.85425 -16.61643 -16.31512 -15.70480 -15.54056 -15.34558 -15.12791 -14.70845 -14.49066 -14.30081 -14.02535 -13.88430 -13.74671 -13.38350 -13.36126 -13.22193 -12.88792 -12.71114 -12.67994 -12.14431 -11.87742 -11.71863 -11.68882 -11.43977 -11.19127 -10.91160 -10.81028 -10.68546 -10.67431 -10.43450 -10.22256 -9.52962 -9.33648 -9.07136 -9.04566 -8.63089 -8.48929 -7.80332 -7.17545 -6.42904 -4.98419 0.81668 0.99635 1.07794 1.48072 1.97975 2.09723 2.82374 3.05352 3.08718 3.11070 3.24676 3.39915 3.69689 4.01174 4.02526 4.07036 4.42015 4.48066 4.52766 4.54825 4.59562 4.75981 4.82771 4.88547 4.99004 5.09704 5.12930 5.14553 5.34434 5.42086 5.60075 5.67131 5.73110 5.82657 5.85710 5.88811 6.05654 6.09599 6.15170 6.29334 6.37035 6.58995 6.59560 6.66990 6.80633 6.85194 7.17665 7.25761 7.54843 7.80461 7.95420 8.64605 8.73272 9.26370 10.36026 10.61028 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.001229 C = 0.001169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.959989 B =22784.326291 C =23954.164281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.089 3.911 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.558 3.442 10 O -0.554 6.554 11 N -0.588 5.588 12 N -0.190 5.190 13 C 0.019 3.981 14 C -0.052 4.052 15 C -0.068 4.068 16 C -0.145 4.145 17 C 0.117 3.883 18 O -0.292 6.292 19 C 0.043 3.957 20 C 0.517 3.483 21 O -0.494 6.494 22 N -0.672 5.672 23 C 0.145 3.855 24 C -0.144 4.144 25 C -0.103 4.103 26 C -0.135 4.135 27 C -0.102 4.102 28 C -0.121 4.121 29 C -0.207 4.207 30 C -0.052 4.052 31 H 0.275 0.725 32 H 0.369 0.631 33 H 0.107 0.893 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.414 0.586 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.140 0.860 44 H 0.126 0.874 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 -27.207 -0.096 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.366 3.634 10 O -0.434 6.434 11 N -0.334 5.334 12 N 0.000 5.000 13 C -0.190 4.190 14 C -0.055 4.055 15 C -0.089 4.089 16 C -0.164 4.164 17 C 0.071 3.929 18 O -0.204 6.204 19 C -0.036 4.036 20 C 0.304 3.696 21 O -0.367 6.367 22 N -0.320 5.320 23 C 0.051 3.949 24 C -0.164 4.164 25 C -0.121 4.121 26 C -0.154 4.154 27 C -0.121 4.121 28 C -0.141 4.141 29 C -0.226 4.226 30 C -0.072 4.072 31 H 0.086 0.914 32 H 0.205 0.795 33 H 0.124 0.876 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.250 0.750 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.157 0.843 44 H 0.144 0.856 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.864 -27.261 -0.107 28.991 hybrid contribution 1.360 1.182 -0.019 1.802 sum -8.504 -26.079 -0.126 27.431 Atomic orbital electron populations 1.70002 1.07364 1.28174 1.31631 1.25761 0.94683 1.00678 0.92403 0.86265 0.79799 0.80081 0.79739 1.18968 1.20222 1.18973 1.19719 0.94449 0.89648 1.53512 0.91121 1.16789 0.87854 0.80350 0.78375 1.90718 1.13416 1.85314 1.53958 1.48081 1.07419 1.01835 1.76085 1.74792 1.27913 0.92923 1.04350 1.23888 0.96608 0.90701 1.07829 1.18507 0.92766 0.91111 1.03096 1.20802 0.99801 0.90398 0.97865 1.19993 0.90448 0.99057 1.06892 1.19235 0.91832 0.83735 0.98069 1.86042 1.16790 1.28513 1.89063 1.22358 0.82077 0.94547 1.04607 1.20308 0.81885 0.91190 0.76257 1.90759 1.58616 1.41788 1.45495 1.43301 1.06963 1.07954 1.73758 1.17722 0.94704 0.84538 0.97924 1.20927 0.96825 0.98198 1.00473 1.20964 0.99860 0.92019 0.99281 1.21188 0.96013 0.99152 0.99006 1.21112 0.95665 0.96699 0.98610 1.21353 1.01123 0.92025 0.99605 1.20934 1.00014 0.92027 1.09625 1.21129 0.93626 0.98178 0.94255 0.91407 0.79538 0.87617 0.84936 0.85084 0.88382 0.88339 0.74982 0.85543 0.85576 0.85909 0.85611 0.84263 0.85595 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.53 11.71 55.56 0.65 -20.88 16 2 C 0.09 2.37 5.50 -17.34 -0.10 2.27 16 3 Si 0.92 19.10 29.56 -169.99 -5.02 14.08 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.54 -14.68 9.26 -37.92 -0.35 -15.04 16 8 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 9 C 0.56 16.05 7.65 -15.33 -0.12 15.93 16 10 O -0.55 -18.27 15.20 4.94 0.08 -18.20 16 11 N -0.59 -13.90 6.26 28.92 0.18 -13.72 16 12 N -0.19 -4.18 10.19 32.13 0.33 -3.85 16 13 C 0.02 0.31 10.75 -14.60 -0.16 0.16 16 14 C -0.05 -0.78 5.88 -104.95 -0.62 -1.40 16 15 C -0.07 -0.82 9.76 -39.42 -0.38 -1.20 16 16 C -0.15 -1.72 9.93 -39.82 -0.40 -2.12 16 17 C 0.12 1.44 6.71 -38.86 -0.26 1.18 16 18 O -0.29 -3.47 9.66 -38.67 -0.37 -3.84 16 19 C 0.04 0.34 5.21 36.00 0.19 0.53 16 20 C 0.52 4.80 7.75 -10.99 -0.09 4.71 16 21 O -0.49 -6.63 13.94 -14.36 -0.20 -6.83 16 22 N -0.67 -4.43 5.34 -9.86 -0.05 -4.49 16 23 C 0.14 1.18 6.30 -83.69 -0.53 0.65 16 24 C -0.14 -0.94 9.97 -39.40 -0.39 -1.33 16 25 C -0.10 -0.62 10.04 -39.61 -0.40 -1.02 16 26 C -0.13 -0.87 10.04 -39.55 -0.40 -1.26 16 27 C -0.10 -0.78 10.04 -39.61 -0.40 -1.17 16 28 C -0.12 -1.12 8.70 -39.39 -0.34 -1.47 16 29 C -0.21 -2.53 8.97 -39.82 -0.36 -2.89 16 30 C -0.05 -0.77 9.54 -39.42 -0.38 -1.15 16 31 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 32 H 0.37 7.31 8.62 -182.59 -1.57 5.74 16 33 H 0.11 1.48 8.03 -52.49 -0.42 1.06 16 34 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.10 0.55 7.65 -51.93 -0.40 0.15 16 37 H 0.10 0.57 7.65 -51.93 -0.40 0.17 16 38 H 0.41 1.24 8.82 -40.82 -0.36 0.88 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 41 H 0.12 0.53 8.06 -52.49 -0.42 0.10 16 42 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.14 1.48 6.22 -52.48 -0.33 1.16 16 44 H 0.13 1.16 6.27 -52.49 -0.33 0.83 16 45 H 0.14 2.38 7.55 -52.49 -0.40 1.99 16 LS Contribution 400.45 15.07 6.03 6.03 Total: -1.00 -38.88 400.45 -10.13 -49.01 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.28 Total: 7.28 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -5.46 Total: -4.61 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 1.11 Total: -42.93 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.50 Total: -28.86 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.88 -10.13 -49.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028214264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.894 kcal (2) G-P(sol) polarization free energy of solvation -38.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds