Wall clock time and date at job start Tue Mar 31 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30607 * 1 3 3 Si 1.86798 * 120.00190 * 2 1 4 4 H 1.48493 * 109.47093 * 239.99774 * 3 2 1 5 5 H 1.48500 * 109.46862 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46894 * 119.99766 * 3 2 1 7 7 C 1.40199 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.40686 * 120.00297 * 0.02562 * 7 2 1 10 10 O 1.21977 * 119.99931 * 0.02562 * 9 7 2 11 11 N 1.34782 * 119.99841 * 180.02562 * 9 7 2 12 12 N 1.40106 * 119.99627 * 179.97438 * 11 9 7 13 13 C 1.30698 * 119.99819 * 180.02562 * 12 11 9 14 14 C 1.46736 * 119.99826 * 180.02562 * 13 12 11 15 15 C 1.40260 * 120.12372 * 179.97438 * 14 13 12 16 16 C 1.36592 * 119.87145 * 180.02562 * 15 14 13 17 17 C 1.39207 * 120.12626 * 0.02562 * 16 15 14 18 18 O 1.35686 * 119.87379 * 179.97438 * 17 16 15 19 19 C 1.42898 * 117.00144 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47173 * 180.02562 * 19 18 17 21 21 O 1.21286 * 119.99973 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00040 * 180.02562 * 20 19 18 23 23 C 1.39928 * 120.00112 * 175.37507 * 22 20 19 24 24 C 1.38868 * 120.07151 * 214.81167 * 23 22 20 25 25 C 1.38109 * 119.92757 * 179.74576 * 24 23 22 26 26 C 1.38287 * 120.07302 * 0.53004 * 25 24 23 27 27 C 1.38280 * 120.13551 * 359.74610 * 26 25 24 28 28 C 1.38113 * 120.07528 * 359.97438 * 27 26 25 29 29 C 1.39205 * 120.25195 * 359.97046 * 17 16 15 30 30 C 1.36591 * 120.12909 * 0.05299 * 29 17 16 31 31 H 0.96998 * 119.99677 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00119 * 0.02562 * 11 9 7 33 33 H 1.08001 * 119.99523 * 359.97438 * 13 12 11 34 34 H 1.08004 * 120.06506 * 0.29179 * 15 14 13 35 35 H 1.07993 * 119.93689 * 180.02562 * 16 15 14 36 36 H 1.08999 * 109.47026 * 300.00119 * 19 18 17 37 37 H 1.09004 * 109.46686 * 59.99923 * 19 18 17 38 38 H 0.97000 * 119.99936 * 355.38107 * 22 20 19 39 39 H 1.07995 * 120.03588 * 0.02562 * 24 23 22 40 40 H 1.08000 * 119.96661 * 180.26996 * 25 24 23 41 41 H 1.07992 * 119.93288 * 179.71564 * 26 25 24 42 42 H 1.08009 * 119.96342 * 179.97438 * 27 26 25 43 43 H 1.08004 * 120.03806 * 180.02562 * 28 27 26 44 44 H 1.07997 * 119.92924 * 180.02562 * 29 17 16 45 45 H 1.07997 * 120.06119 * 179.97438 * 30 29 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0939 1.6963 -1.2124 5 1 1.2751 2.7464 0.0006 6 1 3.0938 1.6963 1.2126 7 6 2.0070 -1.2142 -0.0005 8 1 3.0870 -1.2143 -0.0001 9 6 1.3035 -2.4326 -0.0016 10 8 0.0838 -2.4325 -0.0026 11 7 1.9775 -3.5998 -0.0016 12 7 1.2769 -4.8131 -0.0022 13 6 1.9303 -5.9450 -0.0017 14 6 1.1966 -7.2157 -0.0028 15 6 1.8952 -8.4320 -0.0028 16 6 1.2070 -9.6118 -0.0044 17 6 -0.1851 -9.6087 -0.0066 18 8 -0.8635 -10.7838 -0.0087 19 6 -2.2906 -10.7089 -0.0102 20 6 -2.8666 -12.1015 -0.0118 21 8 -2.1278 -13.0633 -0.0111 22 7 -4.2027 -12.2780 -0.0140 23 6 -4.7380 -13.5671 -0.1132 24 6 -5.9220 -13.7774 -0.8077 25 6 -6.4448 -15.0517 -0.9082 26 6 -5.7965 -16.1160 -0.3088 27 6 -4.6204 -15.9090 0.3883 28 6 -4.0893 -14.6379 0.4877 29 6 -0.8837 -8.4047 -0.0065 30 6 -0.2059 -7.2188 -0.0054 31 1 -0.4849 0.8401 -0.0004 32 1 2.9475 -3.5998 -0.0005 33 1 3.0104 -5.9449 -0.0013 34 1 2.9752 -8.4356 0.0028 35 1 1.7438 -10.5489 -0.0040 36 1 -2.6275 -10.1778 0.8799 37 1 -2.6254 -10.1758 -0.9001 38 1 -4.7934 -11.5115 0.0531 39 1 -6.4309 -12.9460 -1.2727 40 1 -7.3633 -15.2166 -1.4520 41 1 -6.2098 -17.1108 -0.3850 42 1 -4.1166 -16.7422 0.8558 43 1 -3.1704 -14.4770 1.0320 44 1 -1.9636 -8.4083 -0.0077 45 1 -0.7490 -6.2853 -0.0057 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028214264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:49 Heat of formation + Delta-G solvation = -31.162794 kcal Electronic energy + Delta-G solvation = -29308.382784 eV Core-core repulsion = 24870.522265 eV Total energy + Delta-G solvation = -4437.860519 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84546 -41.00095 -39.65975 -39.41592 -38.50543 -36.71571 -35.92361 -34.71359 -33.14968 -32.23522 -31.84784 -31.50324 -30.39561 -28.97506 -28.18918 -24.75397 -24.29797 -23.73218 -23.13762 -22.26496 -21.48854 -21.28094 -19.55036 -19.35223 -19.05804 -18.06728 -17.71371 -17.61488 -17.55463 -17.17770 -16.65452 -16.28480 -16.01090 -15.80438 -15.45635 -15.20610 -15.13862 -15.09651 -14.76687 -14.65151 -14.34843 -14.28695 -13.95880 -13.78755 -13.72486 -13.31089 -13.04720 -12.96238 -12.70137 -12.68280 -12.64815 -12.21348 -12.06927 -12.00535 -11.87078 -11.46197 -10.99173 -10.97813 -10.92688 -10.07238 -9.98194 -9.93257 -9.87911 -9.19654 -8.64863 -8.41962 -7.08928 -0.06903 0.25326 0.45301 0.46981 1.29998 1.39595 1.39756 1.43385 1.56482 1.57931 2.08225 2.36805 2.42817 2.52725 2.86456 2.93541 3.39506 3.65501 3.79574 3.84091 3.94549 3.99784 4.03931 4.04691 4.06515 4.30323 4.33092 4.40161 4.51222 4.56204 4.61122 4.64172 4.66526 4.99414 5.10332 5.15425 5.19527 5.26614 5.32373 5.34248 5.44042 5.53122 5.61744 5.66494 5.69651 5.81898 6.03444 6.06813 6.21313 6.36155 6.68315 6.94088 6.96549 7.46738 8.41854 8.59549 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.001229 C = 0.001169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.959989 B =22784.326291 C =23954.164281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.031 3.969 3 Si 1.009 2.991 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.563 4.563 8 H 0.095 0.905 9 C 0.544 3.456 10 O -0.616 6.616 11 N -0.596 5.596 12 N -0.267 5.267 13 C 0.070 3.930 14 C -0.093 4.093 15 C -0.043 4.043 16 C -0.153 4.153 17 C 0.131 3.869 18 O -0.308 6.308 19 C 0.037 3.963 20 C 0.517 3.483 21 O -0.544 6.544 22 N -0.655 5.655 23 C 0.125 3.875 24 C -0.143 4.143 25 C -0.105 4.105 26 C -0.137 4.137 27 C -0.115 4.115 28 C -0.147 4.147 29 C -0.207 4.207 30 C -0.064 4.064 31 H 0.281 0.719 32 H 0.384 0.616 33 H 0.141 0.859 34 H 0.167 0.833 35 H 0.151 0.849 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.432 0.568 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.135 0.865 43 H 0.116 0.884 44 H 0.154 0.846 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 -28.459 -0.608 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.187 4.187 3 Si 0.827 3.173 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.599 4.599 8 H 0.113 0.887 9 C 0.354 3.646 10 O -0.502 6.502 11 N -0.341 5.341 12 N -0.074 5.074 13 C -0.139 4.139 14 C -0.095 4.095 15 C -0.063 4.063 16 C -0.172 4.172 17 C 0.084 3.916 18 O -0.221 6.221 19 C -0.041 4.041 20 C 0.304 3.696 21 O -0.420 6.420 22 N -0.304 5.304 23 C 0.032 3.968 24 C -0.163 4.163 25 C -0.123 4.123 26 C -0.156 4.156 27 C -0.133 4.133 28 C -0.167 4.167 29 C -0.225 4.225 30 C -0.084 4.084 31 H 0.092 0.908 32 H 0.222 0.778 33 H 0.158 0.842 34 H 0.184 0.816 35 H 0.169 0.831 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.271 0.729 39 H 0.169 0.831 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.153 0.847 43 H 0.134 0.866 44 H 0.172 0.828 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.341 -28.549 -0.615 30.045 hybrid contribution 1.108 1.056 0.136 1.536 sum -8.234 -27.493 -0.480 28.704 Atomic orbital electron populations 1.70174 1.09944 1.29822 1.32881 1.27129 0.95534 1.05292 0.90793 0.84908 0.78155 0.73686 0.80576 1.17492 1.19526 1.17504 1.20292 0.95782 0.90095 1.53750 0.88705 1.17172 0.87399 0.82232 0.77828 1.90648 1.15787 1.86817 1.56932 1.47291 1.07714 1.01858 1.77268 1.74899 1.28868 0.93290 1.10342 1.24604 0.98540 0.90132 1.00652 1.18635 0.92913 0.91240 1.06713 1.21074 1.01347 0.88895 0.95006 1.20339 0.90601 0.99847 1.06397 1.19404 0.92302 0.83769 0.96116 1.86032 1.19031 1.28330 1.88677 1.22682 0.80086 0.94144 1.07186 1.20596 0.82378 0.91170 0.75433 1.90747 1.59883 1.43256 1.48093 1.43150 1.06401 1.08346 1.72478 1.17926 0.95507 0.84708 0.98697 1.21235 0.96013 0.99371 0.99716 1.21373 1.00557 0.91658 0.98749 1.21510 0.95363 1.00541 0.98164 1.21317 0.96455 0.96431 0.99135 1.21342 1.01006 0.93484 1.00903 1.21093 1.01500 0.90937 1.09018 1.21047 0.94124 0.98062 0.95207 0.90833 0.77844 0.84226 0.81592 0.83095 0.85639 0.85664 0.72868 0.83124 0.82921 0.83685 0.84718 0.86587 0.82818 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.23 11.71 21.86 0.26 -47.97 16 2 C 0.03 1.70 5.50 85.35 0.47 2.17 16 3 Si 1.01 39.15 29.56 68.60 2.03 41.18 16 4 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 6 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 7 C -0.56 -31.62 9.26 23.34 0.22 -31.40 16 8 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 9 C 0.54 32.90 7.65 84.84 0.65 33.55 16 10 O -0.62 -43.30 15.20 -5.24 -0.08 -43.38 16 11 N -0.60 -29.24 6.26 -180.50 -1.13 -30.37 16 12 N -0.27 -12.19 10.19 -52.26 -0.53 -12.72 16 13 C 0.07 2.33 10.75 87.08 0.94 3.27 16 14 C -0.09 -2.65 5.88 -20.08 -0.12 -2.77 16 15 C -0.04 -0.90 9.76 22.38 0.22 -0.68 16 16 C -0.15 -3.19 9.93 22.12 0.22 -2.97 16 17 C 0.13 2.91 6.71 22.74 0.15 3.06 16 18 O -0.31 -6.71 9.66 -71.00 -0.69 -7.40 16 19 C 0.04 0.50 5.21 71.23 0.37 0.87 16 20 C 0.52 9.18 7.75 87.66 0.68 9.86 16 21 O -0.54 -14.87 13.94 15.99 0.22 -14.65 16 22 N -0.66 -7.87 5.34 -303.51 -1.62 -9.49 16 23 C 0.13 1.95 6.30 38.15 0.24 2.20 16 24 C -0.14 -1.58 9.97 22.39 0.22 -1.35 16 25 C -0.11 -1.03 10.04 22.25 0.22 -0.81 16 26 C -0.14 -1.54 10.04 22.29 0.22 -1.32 16 27 C -0.11 -1.73 10.04 22.25 0.22 -1.51 16 28 C -0.15 -2.83 8.70 22.39 0.19 -2.63 16 29 C -0.21 -4.74 8.97 22.12 0.20 -4.54 16 30 C -0.06 -1.92 9.54 22.38 0.21 -1.71 16 31 H 0.28 15.15 8.29 -92.71 -0.77 14.38 16 32 H 0.38 15.50 8.62 -213.31 -1.84 13.66 16 33 H 0.14 3.55 8.03 -2.91 -0.02 3.53 16 34 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.13 1.05 7.65 -2.39 -0.02 1.03 16 37 H 0.13 1.07 7.65 -2.38 -0.02 1.05 16 38 H 0.43 1.70 8.82 -92.71 -0.82 0.88 16 39 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.15 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.13 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.12 2.72 6.22 -2.91 -0.02 2.70 16 44 H 0.15 2.50 6.27 -2.91 -0.02 2.48 16 45 H 0.11 4.00 7.55 -2.91 -0.02 3.97 16 Total: -1.00 -93.02 400.45 2.41 -90.61 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: -1.59 Total: 30.91 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.54 Total: 3.28 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -3.03 Total: -100.55 kcal Atomic # 8 Polarization: -64.89 SS G_CDS: -0.54 Total: -65.43 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -93.02 2.41 -90.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028214264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.452 kcal (2) G-P(sol) polarization free energy of solvation -93.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds