Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31537 * 119.49006 * 2 1 4 4 C 1.32620 * 121.93853 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.67026 * 179.97438 * 4 3 2 6 6 C 1.80997 * 100.00057 * 359.97438 * 5 4 3 7 7 C 1.53002 * 109.47031 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46929 * 179.97438 * 7 6 5 9 9 H 1.08006 * 120.00416 * 0.02562 * 8 7 6 10 10 C 1.37884 * 120.00108 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00085 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99633 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47025 * 89.99849 * 12 10 8 14 14 H 1.48498 * 109.47043 * 209.99906 * 12 10 8 15 15 H 1.48501 * 109.47161 * 329.99830 * 12 10 8 16 16 C 1.40907 * 120.65733 * 0.27002 * 4 3 2 17 17 C 1.43202 * 120.53423 * 179.70525 * 16 4 3 18 18 N 4.76788 * 139.80131 * 0.32017 * 3 1 2 19 19 C 1.39461 * 118.92117 * 359.48076 * 16 4 3 20 20 C 1.39802 * 119.48869 * 180.02562 * 2 1 3 21 21 C 1.47526 * 120.39425 * 359.97438 * 20 2 1 22 22 O 1.21607 * 119.99213 * 6.55290 * 21 20 2 23 23 N 1.34767 * 120.00270 * 186.55265 * 21 20 2 24 24 C 1.39853 * 119.99984 * 184.58324 * 23 21 20 25 25 C 1.38892 * 120.07324 * 324.38895 * 24 23 21 26 26 C 1.38110 * 119.92994 * 179.78721 * 25 24 23 27 27 C 1.38281 * 120.06728 * 0.49608 * 26 25 24 28 28 C 1.38281 * 120.14944 * 359.73655 * 27 26 25 29 29 C 1.38112 * 120.07229 * 0.03063 * 28 27 26 30 30 H 1.08996 * 109.47508 * 96.96900 * 1 2 3 31 31 H 1.08996 * 109.47454 * 216.97304 * 1 2 3 32 32 H 1.09002 * 109.47058 * 336.97264 * 1 2 3 33 33 H 1.09001 * 109.46991 * 59.99757 * 6 5 4 34 34 H 1.08996 * 109.47241 * 299.99951 * 6 5 4 35 35 H 1.09005 * 109.46967 * 300.00010 * 7 6 5 36 36 H 1.08996 * 109.46992 * 59.99986 * 7 6 5 37 37 H 0.97005 * 119.99507 * 180.02562 * 11 10 8 38 38 H 1.08001 * 120.87799 * 180.23442 * 19 16 4 39 39 H 0.97001 * 120.00151 * 4.58584 * 23 21 20 40 40 H 1.08001 * 120.03674 * 0.03379 * 25 24 23 41 41 H 1.07992 * 119.96444 * 180.25481 * 26 25 24 42 42 H 1.08001 * 119.92803 * 179.72157 * 27 26 25 43 43 H 1.08001 * 119.96788 * 179.97438 * 28 27 26 44 44 H 1.07998 * 120.03686 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1545 1.1450 0.0000 4 6 3.4795 1.2016 -0.0005 5 16 4.2855 2.7685 -0.0012 6 6 2.8442 3.8633 -0.0017 7 6 3.3107 5.3205 -0.0029 8 6 2.1107 6.2321 -0.0040 9 1 1.1149 5.8140 -0.0034 10 6 2.2840 7.6000 -0.0047 11 7 1.2368 8.3955 -0.0051 12 14 4.0064 8.3231 -0.0050 13 1 4.4628 8.5140 -1.4053 14 1 3.9934 9.6331 0.6943 15 1 4.9322 7.3972 0.6955 16 6 4.2491 0.0213 -0.0068 17 6 5.6797 0.0856 -0.0136 18 7 6.8145 0.1365 -0.0172 19 6 3.5950 -1.2104 -0.0014 20 6 2.1952 -1.2169 -0.0005 21 6 1.4549 -2.4930 -0.0005 22 8 0.2448 -2.4938 -0.1203 23 7 2.1198 -3.6577 0.1321 24 6 1.4308 -4.8710 0.0362 25 6 0.1365 -4.9773 0.5286 26 6 -0.5427 -6.1756 0.4283 27 6 0.0683 -7.2718 -0.1523 28 6 1.3586 -7.1708 -0.6392 29 6 2.0416 -5.9740 -0.5464 30 1 -0.3634 -0.1247 -1.0200 31 1 -0.3634 -0.8210 0.6180 32 1 -0.3633 0.9458 0.4020 33 1 2.2441 3.6743 0.8884 34 1 2.2441 3.6736 -0.8915 35 1 3.9111 5.5105 0.8868 36 1 3.9106 5.5091 -0.8932 37 1 1.3588 9.3578 -0.0060 38 1 4.1537 -2.1347 -0.0022 39 1 3.0761 -3.6546 0.2942 40 1 -0.3398 -4.1226 0.9858 41 1 -1.5506 -6.2577 0.8073 42 1 -0.4633 -8.2091 -0.2255 43 1 1.8331 -8.0290 -1.0918 44 1 3.0495 -5.8959 -0.9265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031741863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = 57.438108 kcal Electronic energy + Delta-G solvation = -28090.675319 eV Core-core repulsion = 24099.409695 eV Total energy + Delta-G solvation = -3991.265624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47019 -40.18895 -38.64464 -36.88092 -35.43777 -33.89527 -33.42020 -33.00148 -31.35787 -31.28184 -30.05991 -28.38129 -25.94105 -25.32157 -23.46996 -23.37394 -22.93178 -21.22820 -20.94395 -19.63109 -18.20583 -17.92492 -17.18361 -17.03266 -16.84042 -16.45738 -15.90639 -15.19207 -15.00247 -14.90648 -14.53599 -14.41381 -14.28807 -14.02663 -13.79181 -13.65286 -13.59813 -13.37818 -13.13053 -13.09268 -12.87140 -12.79976 -12.48992 -12.30368 -11.97031 -11.90118 -11.67070 -11.31932 -10.75532 -10.65374 -10.58457 -10.41228 -10.36035 -10.18923 -9.83884 -9.77655 -9.69779 -9.34067 -9.29200 -8.66310 -8.58415 -7.73075 -6.16231 -4.17101 -0.02656 0.36081 0.92048 1.03727 1.35716 2.20740 2.25049 2.43475 2.59542 2.78366 3.24045 3.32209 3.34717 3.39409 3.40770 3.48096 4.03007 4.06158 4.18616 4.34613 4.43645 4.53139 4.58250 4.77046 4.79573 5.02488 5.11792 5.16699 5.16748 5.19548 5.21105 5.60732 5.64063 5.68491 5.75004 5.78222 5.88338 5.91684 5.93344 6.08136 6.17837 6.23620 6.41479 6.64362 6.83173 6.94746 7.05744 7.18519 7.36625 7.56293 7.60734 8.36489 8.86315 9.43369 10.96217 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.017569 B = 0.001900 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.309549 B =14731.070811 C =16240.096697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.249 3.751 3 N -0.485 5.485 4 C 0.200 3.800 5 S -0.051 6.051 6 C -0.071 4.071 7 C -0.003 4.003 8 C -0.520 4.520 9 H 0.078 0.922 10 C 0.073 3.927 11 N -0.895 5.895 12 Si 0.876 3.124 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.265 1.265 16 C -0.091 4.091 17 C 0.258 3.742 18 N -0.395 5.395 19 C 0.029 3.971 20 C -0.225 4.225 21 C 0.574 3.426 22 O -0.505 6.505 23 N -0.673 5.673 24 C 0.146 3.854 25 C -0.119 4.119 26 C -0.102 4.102 27 C -0.135 4.135 28 C -0.103 4.103 29 C -0.145 4.145 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.026 0.974 36 H 0.022 0.978 37 H 0.266 0.734 38 H 0.148 0.852 39 H 0.409 0.591 40 H 0.141 0.859 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 -31.942 0.564 31.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.104 3.896 3 N -0.198 5.198 4 C -0.052 4.052 5 S 0.198 5.802 6 C -0.219 4.219 7 C -0.042 4.042 8 C -0.560 4.560 9 H 0.096 0.904 10 C -0.130 4.130 11 N -0.533 5.533 12 Si 0.703 3.297 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.189 1.189 16 C -0.105 4.105 17 C -0.059 4.059 18 N -0.071 5.071 19 C 0.000 4.000 20 C -0.235 4.235 21 C 0.364 3.636 22 O -0.381 6.381 23 N -0.318 5.318 24 C 0.052 3.948 25 C -0.139 4.139 26 C -0.121 4.121 27 C -0.154 4.154 28 C -0.122 4.122 29 C -0.166 4.166 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.165 0.835 39 H 0.246 0.754 40 H 0.159 0.841 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.136 -30.321 0.464 30.400 hybrid contribution 0.228 -0.560 -0.034 0.605 sum 2.363 -30.881 0.431 30.975 Atomic orbital electron populations 1.21205 0.86604 1.04759 1.04790 1.21797 0.97943 0.85939 0.83895 1.68329 1.06277 1.27930 1.17304 1.23969 0.92402 0.98080 0.90773 1.86253 1.15720 0.92857 1.85329 1.23852 0.94324 0.96880 1.06859 1.19483 0.98412 0.88751 0.97562 1.20877 0.92699 0.90224 1.52175 0.90396 1.24951 0.96808 0.96985 0.94224 1.69887 1.29429 1.03952 1.50058 0.86836 0.85249 0.78872 0.78772 1.20040 1.21053 1.18935 1.16217 0.85783 0.93645 1.14816 1.25006 0.91896 0.94684 0.94270 1.81248 1.11437 1.06052 1.08335 1.21563 0.92959 0.96696 0.88781 1.20252 0.93221 0.94555 1.15443 1.17859 0.87091 0.82813 0.75872 1.90777 1.13171 1.86409 1.47743 1.43370 1.12307 1.04159 1.71964 1.17715 0.93449 0.85113 0.98526 1.21342 0.94066 0.98725 0.99719 1.21108 0.99899 0.92395 0.98674 1.21179 0.95407 0.98897 0.99935 1.20947 0.94779 0.97035 0.99391 1.20930 1.01086 0.93040 1.01502 0.88931 0.87672 0.90108 0.88653 0.88681 0.95538 0.95984 0.92433 0.83468 0.75404 0.84139 0.85627 0.85996 0.85698 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 8.82 36.00 0.32 -0.91 16 2 C 0.25 2.89 6.82 -82.13 -0.56 2.33 16 3 N -0.49 -6.74 9.00 -7.54 -0.07 -6.81 16 4 C 0.20 2.75 7.02 -16.20 -0.11 2.64 16 5 S -0.05 -0.83 21.04 -107.50 -2.26 -3.09 16 6 C -0.07 -1.34 4.77 37.16 0.18 -1.17 16 7 C 0.00 -0.06 4.04 -27.88 -0.11 -0.17 16 8 C -0.52 -14.16 9.66 -34.44 -0.33 -14.49 16 9 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 10 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 11 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 12 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.26 -6.14 6.54 56.52 0.37 -5.78 16 16 C -0.09 -1.02 5.77 -106.50 -0.61 -1.63 16 17 C 0.26 3.18 14.30 -22.47 -0.32 2.86 16 18 N -0.40 -5.57 18.54 41.84 0.78 -4.79 16 19 C 0.03 0.24 9.33 -38.47 -0.36 -0.12 16 20 C -0.22 -2.11 5.89 -104.87 -0.62 -2.72 16 21 C 0.57 5.20 7.53 -12.48 -0.09 5.11 16 22 O -0.50 -5.65 10.80 5.27 0.06 -5.60 16 23 N -0.67 -4.57 5.27 -10.81 -0.06 -4.62 16 24 C 0.15 1.14 6.29 -83.72 -0.53 0.62 16 25 C -0.12 -1.02 8.69 -39.39 -0.34 -1.36 16 26 C -0.10 -0.74 10.04 -39.61 -0.40 -1.13 16 27 C -0.14 -0.85 10.04 -39.55 -0.40 -1.25 16 28 C -0.10 -0.62 10.04 -39.61 -0.40 -1.01 16 29 C -0.15 -0.93 9.97 -39.39 -0.39 -1.32 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.11 1.07 5.86 -51.93 -0.30 0.76 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.80 8.12 -51.92 -0.42 1.38 16 34 H 0.09 1.80 8.12 -51.92 -0.42 1.38 16 35 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 36 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.15 0.59 6.59 -52.49 -0.35 0.24 16 39 H 0.41 1.57 6.99 -40.82 -0.29 1.28 16 40 H 0.14 1.33 6.26 -52.49 -0.33 1.01 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.52 8.06 -52.49 -0.42 0.09 16 43 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 44 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -32.07 392.83 -9.71 -41.78 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.00 Total: -1.46 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -5.18 Total: -11.78 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 1.42 Total: -42.18 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: 0.06 Total: -5.60 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -2.26 Total: -3.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.07 -9.71 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031741863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.220 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds