Wall clock time and date at job start Tue Mar 31 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30326 * 119.39948 * 2 1 4 4 N 1.28196 * 123.68642 * 179.97438 * 3 2 1 5 5 C 1.46501 * 119.10134 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47127 * 270.02617 * 5 4 3 7 7 O 1.21285 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99825 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00144 * 355.26262 * 8 6 5 10 10 C 1.50702 * 109.46802 * 90.00173 * 9 8 6 11 11 H 1.07999 * 120.00081 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00141 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47077 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47089 * 119.99997 * 14 12 10 17 17 H 1.48501 * 109.47667 * 240.00427 * 14 12 10 18 18 C 1.39929 * 119.99693 * 175.26623 * 8 6 5 19 19 C 1.38867 * 120.07105 * 291.84500 * 18 8 6 20 20 C 1.38115 * 119.92967 * 179.76653 * 19 18 8 21 21 C 1.38283 * 120.06955 * 0.49088 * 20 19 18 22 22 C 1.38289 * 120.13890 * 359.76737 * 21 20 19 23 23 C 1.38111 * 120.07215 * 359.97438 * 22 21 20 24 24 C 1.34821 * 121.79540 * 0.05538 * 4 3 2 25 25 O 1.21910 * 120.77500 * 180.24689 * 24 4 3 26 26 C 1.46838 * 118.45423 * 359.96958 * 24 4 3 27 27 C 1.43202 * 121.54314 * 180.02562 * 26 24 4 28 28 N 4.82149 * 136.18708 * 180.02562 * 2 1 3 29 29 C 1.39415 * 116.91753 * 0.02562 * 26 24 4 30 30 C 1.50700 * 121.03015 * 179.97438 * 29 26 24 31 31 H 1.08998 * 109.47515 * 269.97678 * 1 2 3 32 32 H 1.09000 * 109.47194 * 29.98406 * 1 2 3 33 33 H 1.09006 * 109.46962 * 149.97671 * 1 2 3 34 34 H 1.08996 * 109.47106 * 30.02606 * 5 4 3 35 35 H 1.08997 * 109.46725 * 150.02628 * 5 4 3 36 36 H 1.09002 * 109.47068 * 210.00345 * 9 8 6 37 37 H 1.09006 * 109.47083 * 330.00136 * 9 8 6 38 38 H 0.97005 * 119.99629 * 179.97438 * 13 12 10 39 39 H 1.07997 * 120.03712 * 359.97438 * 19 18 8 40 40 H 1.07993 * 119.96930 * 180.25615 * 20 19 18 41 41 H 1.08002 * 119.93215 * 179.74136 * 21 20 19 42 42 H 1.08003 * 119.96032 * 179.97438 * 22 21 20 43 43 H 1.08004 * 120.03378 * 179.97438 * 23 22 21 44 44 H 1.09007 * 109.46933 * 0.02562 * 30 29 26 45 45 H 1.08996 * 109.47338 * 119.99805 * 30 29 26 46 46 H 1.08993 * 109.47217 * 240.00337 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1467 1.1354 0.0000 4 7 3.4251 1.2313 0.0005 5 6 4.0400 2.5610 0.0010 6 6 4.2507 3.0175 -1.4196 7 8 3.9195 2.3028 -2.3418 8 7 4.8073 4.2202 -1.6654 9 6 5.1120 5.1269 -0.5557 10 6 6.5105 4.8624 -0.0605 11 1 7.1123 4.0959 -0.5260 12 6 7.0221 5.5996 0.9863 13 7 6.2894 6.5334 1.5528 14 14 8.7552 5.2714 1.6007 15 1 9.3650 4.1782 0.8016 16 1 9.5725 6.5031 1.4582 17 1 8.7065 4.8722 3.0302 18 6 5.0940 4.6028 -2.9805 19 6 6.0922 3.9511 -3.6928 20 6 6.3695 4.3279 -4.9923 21 6 5.6613 5.3596 -5.5807 22 6 4.6703 6.0141 -4.8722 23 6 4.3846 5.6385 -3.5742 24 6 4.2191 0.1417 -0.0001 25 8 5.4330 0.2544 0.0049 26 6 3.5878 -1.1841 -0.0006 27 6 4.3676 -2.3852 -0.0006 28 7 4.9862 -3.3379 -0.0015 29 6 2.1941 -1.2195 -0.0010 30 6 1.4503 -2.5301 -0.0021 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 3.3847 3.2641 0.5151 35 1 5.0002 2.5170 0.5148 36 1 5.0370 6.1588 -0.8987 37 1 4.4020 4.9608 0.2546 38 1 6.6492 7.0518 2.2895 39 1 6.6488 3.1483 -3.2323 40 1 7.1428 3.8188 -5.5482 41 1 5.8828 5.6551 -6.5956 42 1 4.1193 6.8198 -5.3344 43 1 3.6108 6.1504 -3.0212 44 1 2.1648 -3.3533 -0.0020 45 1 0.8239 -2.5931 0.8876 46 1 0.8244 -2.5919 -0.8923 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031756409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:20 Heat of formation + Delta-G solvation = 38.342427 kcal Electronic energy + Delta-G solvation = -32719.680091 eV Core-core repulsion = 28382.552207 eV Total energy + Delta-G solvation = -4337.127884 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.27437 -41.44086 -39.50285 -39.29311 -38.31834 -36.90861 -36.66827 -34.67963 -33.61194 -32.26348 -31.87086 -30.90298 -29.23447 -29.00532 -28.06334 -25.72131 -25.13593 -24.14270 -23.44176 -23.17151 -21.16398 -20.32867 -19.32657 -18.89677 -18.76204 -18.19757 -17.80465 -17.20236 -17.10923 -16.75990 -16.60665 -16.25165 -15.55830 -15.30308 -15.06617 -15.02290 -14.95854 -14.72617 -14.54777 -14.49055 -14.40044 -14.32813 -13.83354 -13.74426 -13.69119 -13.67275 -13.47707 -13.37391 -13.17942 -13.04106 -12.73733 -12.72775 -12.57833 -12.31520 -12.24012 -12.15294 -11.77488 -11.37283 -11.07177 -10.86680 -10.65447 -10.23194 -9.87819 -9.67371 -9.34479 -8.29234 -6.42150 -1.08236 0.32170 0.39824 0.46019 0.63785 1.32694 1.33366 1.37903 1.41864 1.48841 1.50889 2.04596 2.32279 2.37290 2.43554 2.82133 2.83351 3.02079 3.25537 3.41966 3.57048 3.80456 3.98553 4.01788 4.06221 4.13735 4.20730 4.24113 4.30646 4.46846 4.55707 4.62880 4.70772 4.73984 4.79111 4.89625 5.00101 5.05754 5.06406 5.08884 5.14599 5.41764 5.49083 5.50715 5.55455 5.64057 5.70486 5.93956 6.08289 6.13942 6.26495 6.29200 6.66107 6.97923 7.02366 7.29581 8.76552 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.007803 B = 0.003536 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3587.419887 B = 7915.748494 C = 9481.505239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.069 3.931 3 N -0.213 5.213 4 N -0.325 5.325 5 C 0.107 3.893 6 C 0.512 3.488 7 O -0.572 6.572 8 N -0.554 5.554 9 C 0.251 3.749 10 C -0.551 4.551 11 H 0.042 0.958 12 C 0.036 3.964 13 N -0.908 5.908 14 Si 0.944 3.056 15 H -0.284 1.284 16 H -0.272 1.272 17 H -0.273 1.273 18 C 0.134 3.866 19 C -0.137 4.137 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.105 4.105 23 C -0.135 4.135 24 C 0.494 3.506 25 O -0.561 6.561 26 C -0.156 4.156 27 C 0.296 3.704 28 N -0.435 5.435 29 C 0.079 3.921 30 C -0.131 4.131 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.157 0.843 35 H 0.128 0.872 36 H 0.033 0.967 37 H 0.048 0.952 38 H 0.271 0.729 39 H 0.089 0.911 40 H 0.143 0.857 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.129 0.871 44 H 0.063 0.937 45 H 0.140 0.860 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.849 -8.402 -5.257 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 N -0.037 5.037 4 N -0.142 5.142 5 C -0.016 4.016 6 C 0.300 3.700 7 O -0.453 6.453 8 N -0.281 5.281 9 C 0.132 3.868 10 C -0.590 4.590 11 H 0.060 0.940 12 C -0.166 4.166 13 N -0.546 5.546 14 Si 0.770 3.230 15 H -0.209 1.209 16 H -0.197 1.197 17 H -0.198 1.198 18 C 0.043 3.957 19 C -0.157 4.157 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.123 4.123 23 C -0.154 4.154 24 C 0.290 3.710 25 O -0.440 6.440 26 C -0.171 4.171 27 C -0.018 4.018 28 N -0.112 5.112 29 C 0.069 3.931 30 C -0.187 4.187 31 H 0.130 0.870 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.174 0.826 35 H 0.146 0.854 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.161 0.839 41 H 0.180 0.820 42 H 0.179 0.821 43 H 0.147 0.853 44 H 0.082 0.918 45 H 0.158 0.842 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.405 -9.033 -5.534 19.528 hybrid contribution 2.154 -0.189 0.744 2.287 sum -14.251 -9.222 -4.790 17.637 Atomic orbital electron populations 1.20935 0.81354 1.06198 1.06093 1.22568 1.00327 0.84958 1.02322 1.70422 0.94167 1.30835 1.08238 1.45960 1.02534 1.07781 1.57912 1.21806 1.02706 0.81428 0.95663 1.20750 0.76976 0.80963 0.91268 1.90630 1.52868 1.54874 1.46879 1.45772 1.58673 1.16954 1.06685 1.19367 0.95694 0.88718 0.83064 1.21560 1.00284 1.19927 1.17189 0.93993 1.25415 1.00705 0.94394 0.96078 1.69957 1.38036 1.22221 1.24411 0.85717 0.80834 0.78029 0.78408 1.20896 1.19735 1.19792 1.17920 0.95932 0.97214 0.84603 1.21264 0.97192 1.00562 0.96674 1.21286 1.00515 0.98173 0.93360 1.21544 0.95717 0.95296 1.01374 1.21407 0.97935 1.00156 0.92826 1.21417 0.99829 0.97536 0.96660 1.19244 0.87416 0.85661 0.78688 1.90969 1.14332 1.86253 1.52488 1.17975 0.92809 0.86189 1.20119 1.24513 0.92694 0.91760 0.92882 1.81211 1.07170 1.12377 1.10449 1.22107 0.89693 0.99838 0.81473 1.21415 1.01078 0.88299 1.07858 0.87028 0.89941 0.86070 0.82562 0.85420 0.94877 0.93401 0.91950 0.89310 0.83899 0.82047 0.82101 0.85276 0.91796 0.84239 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 9.79 71.24 0.70 0.17 16 2 C 0.07 1.21 6.86 43.20 0.30 1.50 16 3 N -0.21 -5.79 10.71 -47.56 -0.51 -6.29 16 4 N -0.33 -11.41 2.71 -470.36 -1.27 -12.68 16 5 C 0.11 4.15 4.71 85.63 0.40 4.55 16 6 C 0.51 22.55 7.59 87.66 0.67 23.22 16 7 O -0.57 -27.38 16.20 -3.04 -0.05 -27.43 16 8 N -0.55 -24.66 2.50 -635.29 -1.59 -26.26 16 9 C 0.25 11.88 4.88 85.63 0.42 12.30 16 10 C -0.55 -29.42 9.16 25.60 0.23 -29.19 16 11 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 12 C 0.04 1.90 5.46 84.65 0.46 2.37 16 13 N -0.91 -48.71 13.29 21.45 0.28 -48.43 16 14 Si 0.94 43.48 29.54 68.60 2.03 45.51 16 15 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 C 0.13 5.62 4.74 38.15 0.18 5.80 16 19 C -0.14 -5.64 9.56 22.39 0.21 -5.43 16 20 C -0.11 -3.64 10.04 22.25 0.22 -3.42 16 21 C -0.12 -3.15 10.04 22.29 0.22 -2.93 16 22 C -0.11 -2.85 10.04 22.25 0.22 -2.62 16 23 C -0.14 -4.70 9.69 22.39 0.22 -4.49 16 24 C 0.49 18.99 7.67 86.49 0.66 19.66 16 25 O -0.56 -26.89 16.32 -5.02 -0.08 -26.98 16 26 C -0.16 -4.52 5.96 -19.50 -0.12 -4.64 16 27 C 0.30 9.27 13.60 88.33 1.20 10.47 16 28 N -0.43 -14.69 18.54 19.00 0.35 -14.34 16 29 C 0.08 1.39 5.99 -19.16 -0.11 1.27 16 30 C -0.13 -0.85 8.81 71.24 0.63 -0.22 16 31 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.12 -0.10 6.72 -2.38 -0.02 -0.12 16 34 H 0.16 5.13 7.25 -2.39 -0.02 5.11 16 35 H 0.13 5.54 7.15 -2.39 -0.02 5.52 16 36 H 0.03 1.64 7.86 -2.39 -0.02 1.63 16 37 H 0.05 2.19 6.47 -2.38 -0.02 2.18 16 38 H 0.27 13.74 8.31 -92.70 -0.77 12.97 16 39 H 0.09 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 41 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 42 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 44 H 0.06 0.67 6.66 -2.38 -0.02 0.65 16 45 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.13 0.11 7.56 -2.39 -0.02 0.09 16 Total: -1.00 -82.30 406.22 6.91 -75.39 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.03 Total: 13.13 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 6.72 Total: 28.39 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -2.74 Total: -108.00 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -0.13 Total: -54.41 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -82.30 6.91 -75.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031756409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.728 kcal (2) G-P(sol) polarization free energy of solvation -82.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds