Wall clock time and date at job start Tue Mar 31 2020 05:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 C 1.52996 * 109.47167 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46788 * 180.02562 * 4 3 2 6 6 C 1.36490 * 119.85596 * 90.00725 * 5 4 3 7 7 S 1.76209 * 119.21081 * 359.97438 * 6 5 4 8 8 C 1.80997 * 100.00003 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47301 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47055 * 179.97438 * 9 8 7 11 11 H 1.07991 * 120.00203 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99490 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99648 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00349 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47187 * 90.00008 * 14 12 10 16 16 H 1.48502 * 109.47414 * 210.00102 * 14 12 10 17 17 H 1.48502 * 109.47284 * 330.00044 * 14 12 10 18 18 N 1.31142 * 121.57912 * 180.02562 * 6 5 4 19 19 C 1.34782 * 121.58399 * 359.97438 * 18 6 5 20 20 S 1.75896 * 130.71659 * 180.02562 * 19 18 6 21 21 C 1.75331 * 92.17456 * 179.97438 * 20 19 18 22 22 C 1.50703 * 124.34661 * 179.97438 * 21 20 19 23 23 C 1.31872 * 111.31332 * 359.97438 * 21 20 19 24 24 C 1.50697 * 122.59419 * 179.97438 * 23 21 20 25 25 C 1.39314 * 119.67525 * 359.97438 * 19 18 6 26 26 C 1.34712 * 119.85982 * 269.77220 * 5 4 3 27 27 O 1.21909 * 120.55062 * 359.92714 * 26 5 4 28 28 H 1.09004 * 109.47550 * 59.99736 * 1 2 3 29 29 H 1.09007 * 109.47085 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47315 * 299.99562 * 1 2 3 31 31 H 1.08999 * 109.47315 * 240.00438 * 2 1 3 32 32 H 1.08991 * 109.47392 * 120.00018 * 2 1 3 33 33 H 1.09007 * 109.46927 * 60.00213 * 3 2 1 34 34 H 1.09004 * 109.47101 * 300.00538 * 3 2 1 35 35 H 1.08999 * 109.47315 * 60.00438 * 4 3 2 36 36 H 1.09000 * 109.47114 * 300.00097 * 4 3 2 37 37 H 1.09003 * 109.47474 * 300.00474 * 8 7 6 38 38 H 1.08998 * 109.47248 * 60.00059 * 8 7 6 39 39 H 1.08999 * 109.46765 * 300.00440 * 9 8 7 40 40 H 1.09007 * 109.46807 * 60.00110 * 9 8 7 41 41 H 0.96999 * 119.99606 * 180.02562 * 13 12 10 42 42 H 1.09005 * 109.46742 * 270.02235 * 22 21 20 43 43 H 1.08997 * 109.46841 * 30.01467 * 22 21 20 44 44 H 1.08997 * 109.47331 * 150.02236 * 22 21 20 45 45 H 1.09001 * 109.47189 * 270.02111 * 24 23 21 46 46 H 1.09002 * 109.47564 * 30.02220 * 24 23 21 47 47 H 1.08999 * 109.47268 * 150.02314 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2853 3.4636 1.1840 7 16 3.9836 2.6089 2.6951 8 6 4.4394 3.8975 3.8815 9 6 4.2537 3.3689 5.3052 10 6 4.6338 4.4417 6.2930 11 1 4.9735 5.4043 5.9407 12 6 4.5479 4.1940 7.6466 13 7 4.8792 5.1304 8.5087 14 14 3.9610 2.5286 8.2561 15 1 5.1258 1.6215 8.4162 16 1 3.2780 2.6928 9.5645 17 1 3.0126 1.9475 7.2722 18 7 4.7217 4.6997 1.2240 19 6 4.9677 5.3982 0.0979 20 16 5.5489 7.0429 -0.1282 21 6 5.4954 6.8930 -1.8743 22 6 5.8818 7.9887 -2.8340 23 6 5.0736 5.6982 -2.2400 24 6 4.9302 5.2952 -3.6850 25 6 4.7572 4.8020 -1.1435 26 6 4.2856 3.4553 -1.1680 27 8 4.0898 2.8865 -2.2284 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6765 1.9564 -0.8900 35 1 3.9329 0.9289 -0.8909 36 1 3.9336 0.9285 0.8891 37 1 5.4822 4.1773 3.7314 38 1 3.8040 4.7704 3.7319 39 1 3.2110 3.0889 5.4556 40 1 4.8895 2.4961 5.4545 41 1 4.8191 4.9560 9.4610 42 1 5.0058 8.5952 -3.0647 43 1 6.6485 8.6161 -2.3795 44 1 6.2702 7.5476 -3.7519 45 1 3.9267 5.5402 -4.0327 46 1 5.6642 5.8316 -4.2865 47 1 5.0961 4.2222 -3.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032910412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:25 Heat of formation + Delta-G solvation = -9.673780 kcal Electronic energy + Delta-G solvation = -28046.074067 eV Core-core repulsion = 24252.768115 eV Total energy + Delta-G solvation = -3793.305952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71798 -37.97692 -37.59144 -36.05044 -34.10725 -33.80235 -31.57044 -31.21084 -29.57967 -29.43612 -26.68651 -25.86648 -25.32402 -23.71329 -23.02639 -21.43376 -21.12873 -19.63526 -18.71221 -18.14302 -17.29913 -17.07704 -16.52301 -16.28522 -15.67689 -15.41935 -14.69207 -14.57866 -14.44500 -14.25190 -13.95952 -13.75562 -13.61947 -13.37666 -13.31291 -13.09317 -12.90581 -12.81767 -12.76732 -12.54901 -12.18801 -12.02516 -11.90864 -11.65671 -11.46885 -11.36494 -11.22122 -10.95170 -10.85347 -10.74669 -10.48143 -10.25881 -10.13798 -9.97266 -9.90200 -9.81543 -9.37631 -8.74926 -8.68427 -8.41609 -7.56592 -6.17948 -4.19291 0.10969 0.86558 1.17355 1.53782 1.79363 1.91467 2.18158 2.52250 3.21752 3.30223 3.30968 3.37080 4.14540 4.32115 4.36254 4.54639 4.61339 4.72520 4.78194 4.85455 4.98911 5.08633 5.14592 5.21374 5.23435 5.28777 5.31096 5.41648 5.49371 5.54254 5.55705 5.63515 5.65979 5.75824 5.76274 5.84333 5.86763 5.93785 5.95794 6.02870 6.09427 6.30902 6.38228 6.47270 6.90658 7.01671 7.39118 7.53424 7.67547 8.34633 8.84987 9.40946 10.94585 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.007995 B = 0.003275 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.433848 B = 8547.697474 C =11725.947133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.135 4.135 4 C 0.089 3.911 5 N -0.516 5.516 6 C 0.382 3.618 7 S -0.019 6.019 8 C -0.072 4.072 9 C 0.000 4.000 10 C -0.520 4.520 11 H 0.078 0.922 12 C 0.073 3.927 13 N -0.895 5.895 14 Si 0.877 3.123 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.264 1.264 18 N -0.508 5.508 19 C 0.106 3.894 20 S 0.191 5.809 21 C -0.217 4.217 22 C -0.076 4.076 23 C -0.031 4.031 24 C -0.097 4.097 25 C -0.250 4.250 26 C 0.567 3.433 27 O -0.527 6.527 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.028 0.972 40 H 0.023 0.977 41 H 0.266 0.734 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.556 -3.375 -22.491 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.174 4.174 4 C -0.032 4.032 5 N -0.238 5.238 6 C 0.007 3.993 7 S 0.219 5.781 8 C -0.220 4.220 9 C -0.040 4.040 10 C -0.560 4.560 11 H 0.096 0.904 12 C -0.130 4.130 13 N -0.533 5.533 14 Si 0.703 3.297 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.189 1.189 18 N -0.236 5.236 19 C -0.132 4.132 20 S 0.456 5.544 21 C -0.333 4.333 22 C -0.135 4.135 23 C -0.042 4.042 24 C -0.156 4.156 25 C -0.270 4.270 26 C 0.362 3.638 27 O -0.405 6.405 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.465 -3.140 -21.130 21.504 hybrid contribution -0.313 -0.948 -1.195 1.557 sum -2.778 -4.088 -22.326 22.866 Atomic orbital electron populations 1.21748 0.95363 1.01739 1.02058 1.21409 0.96372 0.95384 1.02480 1.21967 0.93220 0.98612 1.03565 1.22143 0.96070 0.79617 1.05415 1.46441 1.56007 1.15725 1.05651 1.25418 0.90929 0.91005 0.91929 1.85961 1.79340 1.21946 0.90901 1.23957 1.05910 0.96868 0.95263 1.19475 0.97778 0.97853 0.88871 1.20861 1.45683 0.99794 0.89681 0.90405 1.24957 0.94523 0.96844 0.96660 1.69889 1.47865 1.33326 1.02210 0.86826 0.79618 0.84614 0.78594 1.20015 1.21084 1.18868 1.68556 1.23783 1.04360 1.26913 1.23887 0.98475 0.99650 0.91211 1.84181 1.65590 1.05112 0.99564 1.23691 1.12208 0.99796 0.97648 1.20314 1.01654 0.94811 0.96678 1.19029 0.98419 0.91164 0.95623 1.20610 1.01896 1.03239 0.89851 1.20462 1.16693 0.96312 0.93518 1.16505 0.78459 0.85979 0.82891 1.90850 1.53545 1.68010 1.28048 0.92814 0.92544 0.92397 0.91700 0.91281 0.90558 0.91183 0.87783 0.88099 0.88576 0.88526 0.95425 0.95881 0.92398 0.90727 0.91234 0.90328 0.91078 0.91489 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.14 -1.40 5.54 -26.73 -0.15 -1.55 16 4 C 0.09 1.01 4.90 -4.04 -0.02 0.99 16 5 N -0.52 -7.40 2.61 -119.03 -0.31 -7.71 16 6 C 0.38 5.90 7.79 -88.50 -0.69 5.22 16 7 S -0.02 -0.28 20.00 -107.50 -2.15 -2.43 16 8 C -0.07 -1.33 4.75 37.16 0.18 -1.16 16 9 C 0.00 0.00 4.04 -27.88 -0.11 -0.11 16 10 C -0.52 -13.93 9.66 -34.44 -0.33 -14.26 16 11 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 12 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 13 N -0.90 -26.44 13.96 55.43 0.77 -25.67 16 14 Si 0.88 20.42 27.47 -169.99 -4.67 15.75 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 18 N -0.51 -8.55 9.12 -11.40 -0.10 -8.65 16 19 C 0.11 1.68 7.69 -15.86 -0.12 1.56 16 20 S 0.19 2.48 23.20 -107.50 -2.49 -0.01 16 21 C -0.22 -2.49 6.38 -36.21 -0.23 -2.73 16 22 C -0.08 -0.59 9.98 36.01 0.36 -0.23 16 23 C -0.03 -0.41 5.96 -103.80 -0.62 -1.03 16 24 C -0.10 -1.06 9.45 36.00 0.34 -0.72 16 25 C -0.25 -3.89 6.06 -105.05 -0.64 -4.53 16 26 C 0.57 8.98 7.50 -14.56 -0.11 8.87 16 27 O -0.53 -8.79 14.73 5.00 0.07 -8.71 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.14 7.42 -51.93 -0.39 0.76 16 36 H 0.10 1.03 6.54 -51.93 -0.34 0.69 16 37 H 0.10 1.82 8.11 -51.91 -0.42 1.40 16 38 H 0.10 1.83 8.11 -51.92 -0.42 1.41 16 39 H 0.03 0.60 7.20 -51.93 -0.37 0.22 16 40 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.52 6.51 -51.93 -0.34 0.18 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.56 6.49 -51.93 -0.34 0.23 16 47 H 0.08 1.02 6.59 -51.93 -0.34 0.68 16 LS Contribution 405.14 15.07 6.11 6.11 Total: -1.00 -30.72 405.14 -11.97 -42.69 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.17 Total: -1.61 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -2.03 Total: -9.74 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.36 Total: -42.03 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.71 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -4.64 Total: -2.44 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.72 -11.97 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032910412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.014 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds