Wall clock time and date at job start Tue Mar 31 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 C 1.52996 * 109.47167 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46788 * 180.02562 * 4 3 2 6 6 C 1.36490 * 119.85596 * 90.00725 * 5 4 3 7 7 S 1.76209 * 119.21081 * 359.97438 * 6 5 4 8 8 C 1.80997 * 100.00003 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47301 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47055 * 179.97438 * 9 8 7 11 11 H 1.07991 * 120.00203 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99490 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99648 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00349 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47187 * 90.00008 * 14 12 10 16 16 H 1.48502 * 109.47414 * 210.00102 * 14 12 10 17 17 H 1.48502 * 109.47284 * 330.00044 * 14 12 10 18 18 N 1.31142 * 121.57912 * 180.02562 * 6 5 4 19 19 C 1.34782 * 121.58399 * 359.97438 * 18 6 5 20 20 S 1.75896 * 130.71659 * 180.02562 * 19 18 6 21 21 C 1.75331 * 92.17456 * 179.97438 * 20 19 18 22 22 C 1.50703 * 124.34661 * 179.97438 * 21 20 19 23 23 C 1.31872 * 111.31332 * 359.97438 * 21 20 19 24 24 C 1.50697 * 122.59419 * 179.97438 * 23 21 20 25 25 C 1.39314 * 119.67525 * 359.97438 * 19 18 6 26 26 C 1.34712 * 119.85982 * 269.77220 * 5 4 3 27 27 O 1.21909 * 120.55062 * 359.92714 * 26 5 4 28 28 H 1.09004 * 109.47550 * 59.99736 * 1 2 3 29 29 H 1.09007 * 109.47085 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47315 * 299.99562 * 1 2 3 31 31 H 1.08999 * 109.47315 * 240.00438 * 2 1 3 32 32 H 1.08991 * 109.47392 * 120.00018 * 2 1 3 33 33 H 1.09007 * 109.46927 * 60.00213 * 3 2 1 34 34 H 1.09004 * 109.47101 * 300.00538 * 3 2 1 35 35 H 1.08999 * 109.47315 * 60.00438 * 4 3 2 36 36 H 1.09000 * 109.47114 * 300.00097 * 4 3 2 37 37 H 1.09003 * 109.47474 * 300.00474 * 8 7 6 38 38 H 1.08998 * 109.47248 * 60.00059 * 8 7 6 39 39 H 1.08999 * 109.46765 * 300.00440 * 9 8 7 40 40 H 1.09007 * 109.46807 * 60.00110 * 9 8 7 41 41 H 0.96999 * 119.99606 * 180.02562 * 13 12 10 42 42 H 1.09005 * 109.46742 * 270.02235 * 22 21 20 43 43 H 1.08997 * 109.46841 * 30.01467 * 22 21 20 44 44 H 1.08997 * 109.47331 * 150.02236 * 22 21 20 45 45 H 1.09001 * 109.47189 * 270.02111 * 24 23 21 46 46 H 1.09002 * 109.47564 * 30.02220 * 24 23 21 47 47 H 1.08999 * 109.47268 * 150.02314 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2853 3.4636 1.1840 7 16 3.9836 2.6089 2.6951 8 6 4.4394 3.8975 3.8815 9 6 4.2537 3.3689 5.3052 10 6 4.6338 4.4417 6.2930 11 1 4.9735 5.4043 5.9407 12 6 4.5479 4.1940 7.6466 13 7 4.8792 5.1304 8.5087 14 14 3.9610 2.5286 8.2561 15 1 5.1258 1.6215 8.4162 16 1 3.2780 2.6928 9.5645 17 1 3.0126 1.9475 7.2722 18 7 4.7217 4.6997 1.2240 19 6 4.9677 5.3982 0.0979 20 16 5.5489 7.0429 -0.1282 21 6 5.4954 6.8930 -1.8743 22 6 5.8818 7.9887 -2.8340 23 6 5.0736 5.6982 -2.2400 24 6 4.9302 5.2952 -3.6850 25 6 4.7572 4.8020 -1.1435 26 6 4.2856 3.4553 -1.1680 27 8 4.0898 2.8865 -2.2284 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6765 1.9564 -0.8900 35 1 3.9329 0.9289 -0.8909 36 1 3.9336 0.9285 0.8891 37 1 5.4822 4.1773 3.7314 38 1 3.8040 4.7704 3.7319 39 1 3.2110 3.0889 5.4556 40 1 4.8895 2.4961 5.4545 41 1 4.8191 4.9560 9.4610 42 1 5.0058 8.5952 -3.0647 43 1 6.6485 8.6161 -2.3795 44 1 6.2702 7.5476 -3.7519 45 1 3.9267 5.5402 -4.0327 46 1 5.6642 5.8316 -4.2865 47 1 5.0961 4.2222 -3.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032910412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:24 Heat of formation + Delta-G solvation = -24.213279 kcal Electronic energy + Delta-G solvation = -28046.704547 eV Core-core repulsion = 24252.768115 eV Total energy + Delta-G solvation = -3793.936432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.86067 -39.00352 -38.76645 -36.95815 -35.78859 -34.94257 -33.34669 -32.38619 -30.44651 -30.28869 -27.83049 -27.44592 -26.47995 -24.70050 -24.04270 -22.87938 -22.17579 -20.69443 -19.83498 -19.32631 -19.12123 -18.32431 -17.63091 -17.38603 -16.65682 -16.41320 -16.38672 -15.80904 -15.71017 -15.40931 -15.10456 -14.78335 -14.74700 -14.60065 -14.55921 -14.19969 -14.01788 -13.71935 -13.62772 -13.60629 -13.35488 -13.13916 -12.99265 -12.80138 -12.49924 -12.29996 -12.25910 -12.16914 -12.04603 -11.91260 -11.88475 -11.69980 -11.56037 -11.32301 -11.29057 -11.12939 -10.92249 -10.77673 -9.89119 -9.49491 -8.70262 -8.29353 -6.36195 -1.03404 -0.31949 0.05071 0.36090 0.78484 0.86198 0.87777 1.33490 1.40138 1.41702 1.52522 2.20275 2.36844 3.05833 3.06316 3.27436 3.66706 3.71008 3.76611 3.88225 4.06505 4.17111 4.21032 4.23114 4.27851 4.34555 4.39882 4.56474 4.61158 4.67332 4.68868 4.70196 4.73577 4.80524 4.85705 4.88994 5.02829 5.06702 5.12551 5.19883 5.20965 5.27293 5.28518 5.35201 5.42519 5.49578 5.54798 6.20694 6.22684 6.48631 6.70874 7.27910 8.86902 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.007995 B = 0.003275 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.433848 B = 8547.697474 C =11725.947133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.129 4.129 4 C 0.084 3.916 5 N -0.513 5.513 6 C 0.368 3.632 7 S 0.044 5.956 8 C -0.076 4.076 9 C 0.005 3.995 10 C -0.530 4.530 11 H 0.035 0.965 12 C 0.010 3.990 13 N -0.947 5.947 14 Si 0.946 3.054 15 H -0.264 1.264 16 H -0.286 1.286 17 H -0.238 1.238 18 N -0.530 5.530 19 C 0.073 3.927 20 S 0.196 5.804 21 C -0.194 4.194 22 C -0.079 4.079 23 C -0.058 4.058 24 C -0.090 4.090 25 C -0.260 4.260 26 C 0.559 3.441 27 O -0.541 6.541 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.268 0.732 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.072 -4.989 -24.258 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.167 4.167 4 C -0.036 4.036 5 N -0.234 5.234 6 C -0.007 4.007 7 S 0.281 5.719 8 C -0.225 4.225 9 C -0.035 4.035 10 C -0.570 4.570 11 H 0.054 0.946 12 C -0.188 4.188 13 N -0.587 5.587 14 Si 0.769 3.231 15 H -0.189 1.189 16 H -0.211 1.211 17 H -0.161 1.161 18 N -0.258 5.258 19 C -0.164 4.164 20 S 0.461 5.539 21 C -0.311 4.311 22 C -0.137 4.137 23 C -0.068 4.068 24 C -0.149 4.149 25 C -0.280 4.280 26 C 0.354 3.646 27 O -0.421 6.421 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.983 -4.758 -22.917 23.594 hybrid contribution -0.099 -0.288 -0.790 0.847 sum -3.082 -5.045 -23.707 24.433 Atomic orbital electron populations 1.21756 0.95069 1.02443 1.01702 1.21413 0.96581 0.93853 1.03409 1.21923 0.92372 0.99952 1.02476 1.22403 0.96744 0.78214 1.06273 1.46488 1.55481 1.16555 1.04919 1.25485 0.91606 0.91122 0.92493 1.85494 1.79119 1.18586 0.88747 1.23580 1.05234 0.98214 0.95480 1.19314 0.98184 0.96515 0.89468 1.21189 1.44947 0.99659 0.91163 0.94634 1.25960 0.94705 1.01269 0.96859 1.70055 1.49917 1.36090 1.02671 0.85720 0.79828 0.79295 0.78285 1.18900 1.21143 1.16124 1.68491 1.24174 1.05169 1.27963 1.24191 1.00064 1.00992 0.91166 1.84124 1.64850 1.03639 1.01257 1.24201 1.09658 1.00162 0.97066 1.20536 1.02818 0.93942 0.96410 1.19305 0.99819 0.91466 0.96202 1.20596 1.03122 1.02287 0.88853 1.20838 1.16202 0.96597 0.94395 1.16678 0.78525 0.86310 0.83078 1.90830 1.54398 1.68406 1.28428 0.93207 0.91305 0.92776 0.90947 0.90165 0.91191 0.92711 0.87333 0.86684 0.89699 0.89700 0.94450 0.94602 0.92309 0.89065 0.89935 0.88390 0.90574 0.88598 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.45 16 2 C -0.11 -1.68 5.93 30.59 0.18 -1.50 16 3 C -0.13 -2.53 5.54 30.59 0.17 -2.36 16 4 C 0.08 1.81 4.90 86.38 0.42 2.24 16 5 N -0.51 -14.56 2.61 -648.66 -1.69 -16.25 16 6 C 0.37 11.33 7.79 179.61 1.40 12.73 16 7 S 0.04 1.25 20.00 -56.49 -1.13 0.12 16 8 C -0.08 -2.85 4.75 71.98 0.34 -2.50 16 9 C 0.00 0.20 4.04 29.85 0.12 0.32 16 10 C -0.53 -29.13 9.66 25.60 0.25 -28.89 16 11 H 0.04 2.18 7.99 -2.92 -0.02 2.16 16 12 C 0.01 0.55 5.47 84.65 0.46 1.02 16 13 N -0.95 -57.75 13.96 21.45 0.30 -57.45 16 14 Si 0.95 41.46 27.47 68.60 1.88 43.34 16 15 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 16 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16 18 N -0.53 -18.18 9.12 -189.98 -1.73 -19.91 16 19 C 0.07 2.35 7.69 84.50 0.65 3.00 16 20 S 0.20 5.04 23.20 -56.49 -1.31 3.73 16 21 C -0.19 -4.13 6.38 24.87 0.16 -3.97 16 22 C -0.08 -0.97 9.98 71.24 0.71 -0.26 16 23 C -0.06 -1.46 5.96 -18.92 -0.11 -1.57 16 24 C -0.09 -1.83 9.45 71.23 0.67 -1.15 16 25 C -0.26 -8.11 6.06 -20.14 -0.12 -8.24 16 26 C 0.56 17.78 7.50 85.37 0.64 18.42 16 27 O -0.54 -18.09 14.73 -5.02 -0.07 -18.17 16 28 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.11 2.27 7.42 -2.39 -0.02 2.25 16 36 H 0.12 2.10 6.54 -2.39 -0.02 2.09 16 37 H 0.08 3.32 8.11 -2.39 -0.02 3.30 16 38 H 0.08 3.32 8.11 -2.40 -0.02 3.30 16 39 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 40 H 0.04 1.46 7.57 -2.38 -0.02 1.44 16 41 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.10 0.89 6.51 -2.39 -0.02 0.88 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.10 1.33 6.49 -2.39 -0.02 1.32 16 47 H 0.06 1.50 6.59 -2.39 -0.02 1.48 16 Total: -1.00 -69.21 405.14 3.82 -65.39 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.92 Total: 13.38 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 6.66 Total: -14.17 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -3.12 Total: -93.62 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.07 Total: -18.17 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.88 Total: 43.34 kcal Atomic # 16 Polarization: 6.29 SS G_CDS: -2.44 Total: 3.85 kcal Total: -69.21 3.82 -65.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032910412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.176 kcal (2) G-P(sol) polarization free energy of solvation -69.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds