Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86801 * 119.99865 * 2 1 4 4 H 1.48497 * 109.47240 * 270.00331 * 3 2 1 5 5 H 1.48501 * 109.47091 * 30.00623 * 3 2 1 6 6 H 1.48502 * 109.46855 * 150.00042 * 3 2 1 7 7 C 1.38796 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00236 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99891 * 179.97438 * 7 2 1 10 10 C 1.80995 * 100.00029 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47087 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00141 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00030 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99961 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.46930 * 34.99926 * 14 13 11 16 16 C 1.50701 * 109.47012 * 154.99804 * 14 13 11 17 17 C 1.33991 * 124.92138 * 219.99691 * 16 14 13 18 18 C 1.46786 * 106.18350 * 179.97438 * 17 16 14 19 19 C 1.39406 * 134.36678 * 180.28861 * 18 17 16 20 20 C 1.36740 * 119.71211 * 180.12035 * 19 18 17 21 21 C 1.38739 * 120.41991 * 359.56093 * 20 19 18 22 22 C 1.37857 * 120.68474 * 0.22269 * 21 20 19 23 23 C 1.38938 * 119.81596 * 0.02562 * 22 21 20 24 24 O 1.34445 * 124.92197 * 39.96065 * 16 14 13 25 25 C 1.50700 * 109.47255 * 275.00088 * 14 13 11 26 26 C 1.38238 * 119.99743 * 319.72678 * 25 14 13 27 27 C 1.38230 * 119.99781 * 179.78730 * 26 25 14 28 28 C 1.38233 * 120.00322 * 0.44422 * 27 26 25 29 29 C 1.38237 * 119.99710 * 359.80647 * 28 27 26 30 30 C 1.38228 * 120.00181 * 359.97438 * 29 28 27 31 31 H 0.96999 * 119.99688 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47266 * 60.00429 * 10 9 7 33 33 H 1.08997 * 109.47079 * 299.99752 * 10 9 7 34 34 H 0.97000 * 120.00079 * 0.02562 * 13 11 10 35 35 H 1.08000 * 126.91245 * 359.97438 * 17 16 14 36 36 H 1.08001 * 120.14857 * 359.97118 * 19 18 17 37 37 H 1.08004 * 119.79130 * 179.80268 * 20 19 18 38 38 H 1.07998 * 119.66100 * 180.20346 * 21 20 19 39 39 H 1.08000 * 120.08939 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.99739 * 359.97438 * 26 25 14 41 41 H 1.08004 * 120.00155 * 180.27108 * 27 26 25 42 42 H 1.08004 * 120.00212 * 179.83340 * 28 27 26 43 43 H 1.08000 * 119.99682 * 179.97438 * 29 28 27 44 44 H 1.07996 * 120.00583 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5730 -3.2325 -0.0008 12 8 6.3440 -2.2963 -0.0005 13 7 6.0457 -4.4947 -0.0011 14 6 7.4907 -4.7358 -0.0016 15 1 7.9878 -3.9653 0.5878 16 6 7.7745 -6.0887 0.5986 17 6 8.7927 -6.3627 1.4254 18 6 8.6790 -7.7884 1.7558 19 6 9.4116 -8.6653 2.5544 20 6 9.0301 -9.9750 2.6492 21 6 7.9145 -10.4331 1.9634 22 6 7.1752 -9.5796 1.1726 23 6 7.5486 -8.2462 1.0585 24 8 7.0422 -7.1954 0.3828 25 6 8.0062 -4.6961 -1.4171 26 6 7.2706 -5.2704 -2.4369 27 6 7.7413 -5.2301 -3.7360 28 6 8.9520 -4.6237 -4.0140 29 6 9.6900 -4.0539 -2.9935 30 6 9.2172 -4.0902 -1.6951 31 1 -0.4849 0.8401 0.0004 32 1 3.6434 -3.4318 -0.8907 33 1 3.6441 -3.4313 0.8893 34 1 5.4291 -5.2435 -0.0018 35 1 9.5457 -5.6734 1.7778 36 1 10.2781 -8.3125 3.0939 37 1 9.5986 -10.6563 3.2650 38 1 7.6223 -11.4693 2.0498 39 1 6.3082 -9.9464 0.6434 40 1 6.3266 -5.7479 -2.2191 41 1 7.1645 -5.6750 -4.5334 42 1 9.3210 -4.5946 -5.0286 43 1 10.6361 -3.5805 -3.2106 44 1 9.7940 -3.6455 -0.8976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032946373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = 22.461594 kcal Electronic energy + Delta-G solvation = -28953.615428 eV Core-core repulsion = 24928.540358 eV Total energy + Delta-G solvation = -4025.075071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.83747 -40.03728 -38.75908 -38.19069 -35.37494 -33.16955 -32.44495 -31.84394 -31.00452 -30.73420 -29.85231 -29.12205 -26.04040 -25.56230 -23.47401 -22.73634 -22.45219 -21.82288 -21.07954 -20.30639 -18.14350 -17.67445 -17.44306 -17.23892 -16.60196 -16.41011 -16.03085 -15.57802 -15.34614 -14.98928 -14.84508 -14.68668 -14.35947 -13.98418 -13.76392 -13.59777 -13.46820 -13.45546 -13.20415 -12.99197 -12.80622 -12.59340 -12.51620 -12.26020 -12.11109 -11.46582 -11.29141 -11.26974 -11.17537 -11.01547 -10.64380 -10.44986 -9.88183 -9.68090 -9.31118 -9.02087 -9.00842 -8.96692 -8.89406 -8.51948 -8.46967 -6.92910 -6.29466 -4.01401 0.53263 1.03318 1.13684 1.30176 1.98997 2.31508 2.69872 2.88013 3.21881 3.32857 3.39277 3.49649 3.59267 3.62274 4.08413 4.32265 4.32627 4.49882 4.61002 4.67293 4.71452 4.75960 4.84372 4.88667 4.94377 4.98805 5.00335 5.09561 5.12824 5.27588 5.35289 5.37696 5.50071 5.52273 5.73246 5.77329 5.85035 5.90075 5.91846 5.98672 6.06713 6.09908 6.20111 6.30403 6.31409 6.38434 6.48222 6.84919 6.86385 7.45571 7.93620 8.36291 8.41381 9.16571 10.79768 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.002479 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.096751 B =11290.746425 C =12961.521380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.139 6.139 10 C -0.123 4.123 11 C 0.537 3.463 12 O -0.511 6.511 13 N -0.731 5.731 14 C 0.271 3.729 15 H 0.128 0.872 16 C 0.037 3.963 17 C -0.189 4.189 18 C -0.128 4.128 19 C -0.070 4.070 20 C -0.137 4.137 21 C -0.095 4.095 22 C -0.106 4.106 23 C 0.056 3.944 24 O -0.187 6.187 25 C -0.101 4.101 26 C -0.092 4.092 27 C -0.122 4.122 28 C -0.115 4.115 29 C -0.122 4.122 30 C -0.096 4.096 31 H 0.271 0.729 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.406 0.594 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.481 -21.127 -0.054 30.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.087 5.913 10 C -0.274 4.274 11 C 0.323 3.677 12 O -0.384 6.384 13 N -0.386 5.386 14 C 0.166 3.834 15 H 0.145 0.855 16 C -0.011 4.011 17 C -0.209 4.209 18 C -0.129 4.129 19 C -0.088 4.088 20 C -0.155 4.155 21 C -0.113 4.113 22 C -0.124 4.124 23 C 0.009 3.991 24 O -0.088 6.088 25 C -0.102 4.102 26 C -0.110 4.110 27 C -0.140 4.140 28 C -0.133 4.133 29 C -0.140 4.140 30 C -0.114 4.114 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.241 0.759 35 H 0.179 0.821 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 22.333 -19.448 -0.207 29.615 hybrid contribution -1.048 -0.673 -0.021 1.246 sum 21.285 -20.121 -0.228 29.291 Atomic orbital electron populations 1.69942 1.05906 1.27765 1.48040 1.24714 0.94456 0.98962 0.93189 0.86737 0.81894 0.83297 0.79939 1.19204 1.19933 1.15909 1.22311 0.88222 0.97553 1.58799 0.89355 1.84781 1.09346 0.99695 1.97434 1.23270 0.93469 1.04644 1.06007 1.20329 0.90809 0.81837 0.74719 1.90708 1.58622 1.41912 1.47156 1.46014 1.05789 1.08850 1.77946 1.18266 0.83650 0.88508 0.93013 0.85484 1.22173 0.92986 0.87166 0.98750 1.22209 1.01595 0.94582 1.02499 1.19913 0.97649 0.93948 1.01397 1.20303 0.98918 0.92564 0.97030 1.20790 0.97954 0.95611 1.01182 1.20945 0.94878 0.99438 0.96019 1.19982 1.02036 0.88269 1.02138 1.19630 0.94657 0.89209 0.95615 1.83911 1.49379 1.15763 1.59770 1.19965 0.95843 1.00060 0.94374 1.20939 0.99307 0.98238 0.92565 1.21130 0.96406 0.99966 0.96475 1.21190 0.95030 0.97885 0.99184 1.21100 1.00142 0.99977 0.92753 1.20966 0.95173 0.98110 0.97173 0.91934 0.88333 0.88273 0.75924 0.82102 0.85460 0.85337 0.84756 0.84935 0.86116 0.85935 0.86063 0.85867 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.57 13.97 55.49 0.78 -25.79 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.77 27.74 -169.99 -4.71 17.06 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 10 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 11 C 0.54 9.38 7.80 -10.98 -0.09 9.29 16 12 O -0.51 -10.61 15.52 5.56 0.09 -10.52 16 13 N -0.73 -9.69 4.32 -56.06 -0.24 -9.94 16 14 C 0.27 3.28 2.60 -70.23 -0.18 3.10 16 15 H 0.13 1.57 7.42 -51.93 -0.39 1.18 16 16 C 0.04 0.42 6.02 -35.80 -0.22 0.21 16 17 C -0.19 -1.95 10.99 -37.62 -0.41 -2.37 16 18 C -0.13 -1.36 6.40 -105.16 -0.67 -2.03 16 19 C -0.07 -0.59 10.05 -39.69 -0.40 -0.99 16 20 C -0.14 -0.98 9.98 -39.94 -0.40 -1.37 16 21 C -0.09 -0.67 10.01 -39.54 -0.40 -1.07 16 22 C -0.11 -0.93 10.07 -39.46 -0.40 -1.33 16 23 C 0.06 0.62 7.42 -38.47 -0.29 0.34 16 24 O -0.19 -2.19 10.19 3.92 0.04 -2.15 16 25 C -0.10 -1.25 4.90 -104.62 -0.51 -1.76 16 26 C -0.09 -1.12 9.32 -39.58 -0.37 -1.49 16 27 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 28 C -0.11 -1.18 10.05 -39.58 -0.40 -1.58 16 29 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 30 C -0.10 -1.09 9.67 -39.59 -0.38 -1.47 16 31 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 32 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 33 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 34 H 0.41 4.59 8.27 -40.82 -0.34 4.25 16 35 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 38 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.37 7.73 -52.49 -0.41 0.96 16 41 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 42 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.19 8.04 -52.49 -0.42 0.77 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -35.00 396.85 -10.89 -45.89 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.36 Total: 5.03 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -5.47 Total: -20.06 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.53 Total: -35.73 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.13 Total: -12.68 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.00 -10.89 -45.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032946373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.351 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds