Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86801 * 119.99865 * 2 1 4 4 H 1.48497 * 109.47240 * 270.00331 * 3 2 1 5 5 H 1.48501 * 109.47091 * 30.00623 * 3 2 1 6 6 H 1.48502 * 109.46855 * 150.00042 * 3 2 1 7 7 C 1.38796 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00236 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99891 * 179.97438 * 7 2 1 10 10 C 1.80995 * 100.00029 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47087 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00141 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00030 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99961 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.46930 * 34.99926 * 14 13 11 16 16 C 1.50701 * 109.47012 * 154.99804 * 14 13 11 17 17 C 1.33991 * 124.92138 * 219.99691 * 16 14 13 18 18 C 1.46786 * 106.18350 * 179.97438 * 17 16 14 19 19 C 1.39406 * 134.36678 * 180.28861 * 18 17 16 20 20 C 1.36740 * 119.71211 * 180.12035 * 19 18 17 21 21 C 1.38739 * 120.41991 * 359.56093 * 20 19 18 22 22 C 1.37857 * 120.68474 * 0.22269 * 21 20 19 23 23 C 1.38938 * 119.81596 * 0.02562 * 22 21 20 24 24 O 1.34445 * 124.92197 * 39.96065 * 16 14 13 25 25 C 1.50700 * 109.47255 * 275.00088 * 14 13 11 26 26 C 1.38238 * 119.99743 * 319.72678 * 25 14 13 27 27 C 1.38230 * 119.99781 * 179.78730 * 26 25 14 28 28 C 1.38233 * 120.00322 * 0.44422 * 27 26 25 29 29 C 1.38237 * 119.99710 * 359.80647 * 28 27 26 30 30 C 1.38228 * 120.00181 * 359.97438 * 29 28 27 31 31 H 0.96999 * 119.99688 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47266 * 60.00429 * 10 9 7 33 33 H 1.08997 * 109.47079 * 299.99752 * 10 9 7 34 34 H 0.97000 * 120.00079 * 0.02562 * 13 11 10 35 35 H 1.08000 * 126.91245 * 359.97438 * 17 16 14 36 36 H 1.08001 * 120.14857 * 359.97118 * 19 18 17 37 37 H 1.08004 * 119.79130 * 179.80268 * 20 19 18 38 38 H 1.07998 * 119.66100 * 180.20346 * 21 20 19 39 39 H 1.08000 * 120.08939 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.99739 * 359.97438 * 26 25 14 41 41 H 1.08004 * 120.00155 * 180.27108 * 27 26 25 42 42 H 1.08004 * 120.00212 * 179.83340 * 28 27 26 43 43 H 1.08000 * 119.99682 * 179.97438 * 29 28 27 44 44 H 1.07996 * 120.00583 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5730 -3.2325 -0.0008 12 8 6.3440 -2.2963 -0.0005 13 7 6.0457 -4.4947 -0.0011 14 6 7.4907 -4.7358 -0.0016 15 1 7.9878 -3.9653 0.5878 16 6 7.7745 -6.0887 0.5986 17 6 8.7927 -6.3627 1.4254 18 6 8.6790 -7.7884 1.7558 19 6 9.4116 -8.6653 2.5544 20 6 9.0301 -9.9750 2.6492 21 6 7.9145 -10.4331 1.9634 22 6 7.1752 -9.5796 1.1726 23 6 7.5486 -8.2462 1.0585 24 8 7.0422 -7.1954 0.3828 25 6 8.0062 -4.6961 -1.4171 26 6 7.2706 -5.2704 -2.4369 27 6 7.7413 -5.2301 -3.7360 28 6 8.9520 -4.6237 -4.0140 29 6 9.6900 -4.0539 -2.9935 30 6 9.2172 -4.0902 -1.6951 31 1 -0.4849 0.8401 0.0004 32 1 3.6434 -3.4318 -0.8907 33 1 3.6441 -3.4313 0.8893 34 1 5.4291 -5.2435 -0.0018 35 1 9.5457 -5.6734 1.7778 36 1 10.2781 -8.3125 3.0939 37 1 9.5986 -10.6563 3.2650 38 1 7.6223 -11.4693 2.0498 39 1 6.3082 -9.9464 0.6434 40 1 6.3266 -5.7479 -2.2191 41 1 7.1645 -5.6750 -4.5334 42 1 9.3210 -4.5946 -5.0286 43 1 10.6361 -3.5805 -3.2106 44 1 9.7940 -3.6455 -0.8976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032946373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = 3.183297 kcal Electronic energy + Delta-G solvation = -28954.451398 eV Core-core repulsion = 24928.540358 eV Total energy + Delta-G solvation = -4025.911040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.103 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.59375 -41.15391 -39.84353 -38.83602 -36.47672 -34.68186 -34.01294 -32.86897 -31.84072 -31.37246 -30.83230 -30.26581 -27.89117 -26.87825 -24.20574 -23.55504 -23.17761 -22.64947 -22.00414 -21.46375 -19.98867 -18.50204 -18.33626 -18.22607 -17.97360 -17.19888 -17.12646 -16.84779 -16.60278 -16.25261 -16.00159 -15.87329 -15.34898 -15.11853 -14.91181 -14.85005 -14.57848 -14.33027 -14.15567 -14.08211 -13.98673 -13.57743 -13.36974 -13.32808 -13.23135 -13.02315 -12.82699 -12.66786 -12.29791 -11.98464 -11.90343 -11.87451 -11.26142 -11.17949 -11.09453 -10.56422 -10.48357 -9.86399 -9.79906 -9.60908 -9.18088 -9.00822 -8.52340 -6.23332 -0.16058 0.29792 0.38247 0.45945 0.94038 1.22565 1.31036 1.43483 1.46324 1.54267 1.58270 2.07963 2.24338 2.68068 2.76003 2.79369 2.85839 3.27732 3.58870 3.67872 3.74260 3.85907 4.01201 4.08283 4.11418 4.14794 4.18129 4.24301 4.25215 4.37524 4.42409 4.52530 4.57553 4.64341 4.69835 4.87910 4.97281 5.03766 5.12382 5.18286 5.31414 5.42092 5.49330 5.50635 5.55131 5.56432 5.69876 5.72615 6.04249 6.10734 6.13215 6.25250 6.92493 7.01774 8.60154 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.002479 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.096751 B =11290.746425 C =12961.521380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.235 1.235 7 C -0.530 4.530 8 H 0.061 0.939 9 S -0.166 6.166 10 C -0.112 4.112 11 C 0.545 3.455 12 O -0.546 6.546 13 N -0.711 5.711 14 C 0.277 3.723 15 H 0.124 0.876 16 C 0.021 3.979 17 C -0.186 4.186 18 C -0.152 4.152 19 C -0.079 4.079 20 C -0.136 4.136 21 C -0.088 4.088 22 C -0.122 4.122 23 C 0.029 3.971 24 O -0.200 6.200 25 C -0.116 4.116 26 C -0.112 4.112 27 C -0.133 4.133 28 C -0.120 4.120 29 C -0.126 4.126 30 C -0.111 4.111 31 H 0.277 0.723 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.416 0.584 35 H 0.179 0.821 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.139 0.861 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.718 -22.568 0.158 32.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.159 1.159 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.061 5.939 10 C -0.263 4.263 11 C 0.331 3.669 12 O -0.422 6.422 13 N -0.365 5.365 14 C 0.172 3.828 15 H 0.141 0.859 16 C -0.027 4.027 17 C -0.205 4.205 18 C -0.153 4.153 19 C -0.097 4.097 20 C -0.153 4.153 21 C -0.105 4.105 22 C -0.141 4.141 23 C -0.018 4.018 24 O -0.103 6.103 25 C -0.117 4.117 26 C -0.130 4.130 27 C -0.150 4.150 28 C -0.137 4.137 29 C -0.144 4.144 30 C -0.129 4.129 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.253 0.747 35 H 0.197 0.803 36 H 0.164 0.836 37 H 0.177 0.823 38 H 0.183 0.817 39 H 0.162 0.838 40 H 0.138 0.862 41 H 0.156 0.844 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 24.571 -20.940 0.008 32.283 hybrid contribution -1.675 -0.504 -0.073 1.751 sum 22.896 -21.445 -0.065 31.370 Atomic orbital electron populations 1.70021 1.07325 1.29041 1.49106 1.25578 0.95294 1.02304 0.92877 0.85864 0.80732 0.79529 0.80239 1.18692 1.18311 1.15891 1.22461 0.90301 0.96681 1.58305 0.92050 1.84649 1.06351 1.05373 1.97577 1.23252 0.95391 1.00192 1.07474 1.19905 0.89600 0.82692 0.74687 1.90695 1.59014 1.43212 1.49321 1.45772 1.07040 1.07648 1.76042 1.18241 0.82095 0.89099 0.93357 0.85869 1.21990 0.93942 0.86856 0.99895 1.22524 1.01371 0.95120 1.01516 1.20195 0.98313 0.94269 1.02508 1.20653 0.99329 0.92976 0.96713 1.21224 0.97834 0.95535 1.00742 1.21402 0.94130 1.00587 0.94419 1.20339 1.03005 0.87746 1.02980 1.20104 0.95477 0.89865 0.96339 1.83857 1.49870 1.16127 1.60399 1.20050 0.96584 1.00861 0.94254 1.21086 0.99650 0.98980 0.93300 1.21424 0.97058 1.00078 0.96487 1.21552 0.94632 0.97082 1.00479 1.21458 1.01047 0.99581 0.92340 1.21248 0.95186 0.98216 0.98271 0.91352 0.86933 0.86818 0.74735 0.80339 0.83595 0.82316 0.81671 0.83818 0.86235 0.84350 0.83588 0.83483 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.13 13.97 21.65 0.30 -55.83 16 2 C 0.04 2.64 5.50 84.86 0.47 3.11 16 3 Si 0.91 45.07 27.74 68.60 1.90 46.97 16 4 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.24 -11.51 6.74 99.48 0.67 -10.84 16 7 C -0.53 -31.00 10.04 67.95 0.68 -30.32 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 9 S -0.17 -8.39 18.55 -56.49 -1.05 -9.44 16 10 C -0.11 -4.30 6.16 71.24 0.44 -3.86 16 11 C 0.55 18.97 7.80 87.66 0.68 19.65 16 12 O -0.55 -22.73 15.52 -3.03 -0.05 -22.77 16 13 N -0.71 -18.81 4.32 -449.68 -1.94 -20.75 16 14 C 0.28 6.72 2.60 43.50 0.11 6.84 16 15 H 0.12 3.07 7.42 -2.38 -0.02 3.05 16 16 C 0.02 0.47 6.02 24.72 0.15 0.62 16 17 C -0.19 -3.78 10.99 23.54 0.26 -3.52 16 18 C -0.15 -3.11 6.40 -20.21 -0.13 -3.24 16 19 C -0.08 -1.18 10.05 22.20 0.22 -0.96 16 20 C -0.14 -1.54 9.98 22.04 0.22 -1.32 16 21 C -0.09 -1.02 10.01 22.30 0.22 -0.80 16 22 C -0.12 -2.02 10.07 22.35 0.23 -1.80 16 23 C 0.03 0.64 7.42 22.99 0.17 0.81 16 24 O -0.20 -4.78 10.19 -8.88 -0.09 -4.87 16 25 C -0.12 -2.86 4.90 -19.86 -0.10 -2.96 16 26 C -0.11 -2.71 9.32 22.27 0.21 -2.50 16 27 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 28 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 29 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 30 C -0.11 -2.46 9.67 22.27 0.22 -2.24 16 31 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 32 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 33 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 34 H 0.42 9.36 8.27 -92.71 -0.77 8.59 16 35 H 0.18 2.72 8.06 -2.91 -0.02 2.69 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 38 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 39 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 40 H 0.12 2.77 7.73 -2.91 -0.02 2.74 16 41 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.14 2.54 8.04 -2.91 -0.02 2.51 16 Total: -1.00 -76.57 396.85 4.03 -72.54 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.23 Total: 23.50 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 4.72 Total: -29.35 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -1.64 Total: -76.58 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.14 Total: -27.64 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.90 Total: 46.97 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.05 Total: -9.44 kcal Total: -76.57 4.03 -72.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032946373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.718 kcal (2) G-P(sol) polarization free energy of solvation -76.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds