Wall clock time and date at job start Tue Mar 31 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30124 * 124.96211 * 2 1 4 4 C 1.35824 * 109.71511 * 180.02562 * 3 2 1 5 5 C 1.39712 * 133.46496 * 180.02562 * 4 3 2 6 6 C 1.38198 * 119.71689 * 179.97438 * 5 4 3 7 7 N 1.40098 * 119.81774 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00341 * 146.63651 * 7 6 5 9 9 O 1.21289 * 119.99952 * 354.72052 * 8 7 6 10 10 C 1.50701 * 119.99675 * 175.00098 * 8 7 6 11 11 S 1.80996 * 109.46791 * 179.72376 * 10 8 7 12 12 C 1.76199 * 100.00153 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99969 * 359.97438 * 12 11 10 14 14 C 1.38797 * 120.00027 * 180.02562 * 12 11 10 15 15 N 1.31631 * 120.00252 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99823 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46959 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46729 * 119.99912 * 16 14 12 19 19 H 1.48495 * 109.46917 * 239.99718 * 16 14 12 20 20 C 1.39366 * 120.37286 * 0.24821 * 6 5 4 21 21 C 1.37762 * 120.38191 * 359.50191 * 20 6 5 22 22 C 1.38807 * 119.92274 * 0.48492 * 21 20 6 23 23 N 1.36237 * 124.96074 * 180.02562 * 2 1 3 24 24 C 1.40118 * 126.38351 * 359.95358 * 23 2 1 25 25 C 1.38845 * 120.06540 * 244.74336 * 24 23 2 26 26 C 1.38120 * 119.92916 * 179.76448 * 25 24 23 27 27 C 1.38278 * 120.06641 * 0.51141 * 26 25 24 28 28 C 1.38277 * 120.13626 * 359.74009 * 27 26 25 29 29 C 1.38109 * 120.06941 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46823 * 89.97797 * 1 2 3 31 31 H 1.09002 * 109.46935 * 209.97686 * 1 2 3 32 32 H 1.08995 * 109.47021 * 329.97843 * 1 2 3 33 33 H 1.08008 * 120.14255 * 359.97438 * 5 4 3 34 34 H 0.96998 * 119.99261 * 326.63524 * 7 6 5 35 35 H 1.08994 * 109.47040 * 299.71929 * 10 8 7 36 36 H 1.08996 * 109.47256 * 59.72551 * 10 8 7 37 37 H 0.96999 * 119.99989 * 180.02562 * 15 14 12 38 38 H 1.07994 * 119.80943 * 179.72345 * 20 6 5 39 39 H 1.07997 * 120.03435 * 180.25447 * 21 20 6 40 40 H 1.08001 * 120.03493 * 0.02562 * 25 24 23 41 41 H 1.08003 * 119.96588 * 180.27298 * 26 25 24 42 42 H 1.07999 * 119.92777 * 179.72021 * 27 26 25 43 43 H 1.08006 * 119.96514 * 179.97438 * 28 27 26 44 44 H 1.08004 * 120.03509 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2527 1.0664 0.0000 4 6 3.5631 0.7092 -0.0006 5 6 4.7570 1.4348 -0.0004 6 6 5.9658 0.7649 -0.0006 7 7 7.1643 1.4904 -0.0009 8 6 8.2458 1.0055 0.6407 9 8 8.1563 -0.0099 1.2980 10 6 9.5647 1.7285 0.5466 11 16 10.8096 0.8408 1.5152 12 6 12.2087 1.8750 1.2365 13 1 12.1153 2.7542 0.6164 14 6 13.4311 1.5590 1.8129 15 7 13.5452 0.4870 2.5683 16 14 14.9146 2.6550 1.5168 17 1 14.5259 3.7873 0.6382 18 1 15.4080 3.1815 2.8147 19 1 15.9893 1.8670 0.8616 20 6 5.9993 -0.6283 -0.0062 21 6 4.8280 -1.3535 -0.0013 22 6 3.6060 -0.6951 -0.0009 23 7 2.2877 -1.1165 -0.0005 24 6 1.8395 -2.4441 -0.0002 25 6 2.1034 -3.2671 1.0864 26 6 1.6561 -4.5739 1.0859 27 6 0.9552 -5.0657 0.0001 28 6 0.6952 -4.2500 -1.0857 29 6 1.1357 -2.9410 -1.0891 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5141 33 1 4.7354 2.5147 0.0000 34 1 7.2157 2.3417 -0.4630 35 1 9.8802 1.7745 -0.4956 36 1 9.4534 2.7398 0.9376 37 1 14.3994 0.2664 2.9715 38 1 6.9490 -1.1425 -0.0109 39 1 4.8605 -2.4330 -0.0016 40 1 2.6543 -2.8847 1.9330 41 1 1.8573 -5.2133 1.9327 42 1 0.6103 -6.0892 0.0001 43 1 0.1479 -4.6371 -1.9325 44 1 0.9321 -2.3043 -1.9373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032947106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:59 Heat of formation + Delta-G solvation = 73.096964 kcal Electronic energy + Delta-G solvation = -28281.182116 eV Core-core repulsion = 24290.595511 eV Total energy + Delta-G solvation = -3990.586605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.55866 -40.03169 -39.44488 -37.20480 -34.49927 -34.23817 -32.45525 -31.67964 -31.28018 -30.76756 -29.59347 -28.87270 -26.98391 -25.50516 -23.71176 -23.30225 -22.65876 -22.08424 -20.54924 -20.19865 -18.28779 -18.02359 -17.78957 -16.80971 -16.64935 -16.34707 -15.93740 -15.31358 -14.94266 -14.90293 -14.82554 -14.40702 -14.18902 -14.07610 -13.99098 -13.60415 -13.43294 -13.34395 -13.30570 -13.03692 -12.83365 -12.58229 -12.38111 -12.25837 -11.91710 -11.71681 -11.47591 -11.08576 -11.04786 -10.78584 -10.77914 -10.21381 -9.97830 -9.84485 -9.56528 -9.50722 -9.29207 -9.09773 -8.28708 -8.19368 -7.81064 -6.54052 -6.24571 -3.95637 0.50625 0.77616 0.87416 1.35974 2.26400 2.55891 2.89147 2.94747 3.11987 3.20505 3.25907 3.30547 3.57550 3.82248 3.95520 4.17282 4.22411 4.33620 4.36472 4.56183 4.78464 4.81550 4.88378 4.94992 4.98471 5.05814 5.11037 5.12773 5.21298 5.30195 5.35264 5.39080 5.43434 5.48818 5.62985 5.77499 5.80297 5.81108 5.91820 5.95190 6.07509 6.22521 6.26367 6.29726 6.40024 6.43128 6.95016 7.05707 7.52261 7.57899 7.68896 8.32870 8.41574 9.21155 10.82891 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.001720 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.199011 B =16278.902839 C =17380.348300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.287 3.713 3 N -0.489 5.489 4 C 0.070 3.930 5 C -0.105 4.105 6 C 0.160 3.840 7 N -0.679 5.679 8 C 0.533 3.467 9 O -0.497 6.497 10 C -0.154 4.154 11 S -0.057 6.057 12 C -0.536 4.536 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.095 4.095 21 C -0.089 4.089 22 C 0.035 3.965 23 N -0.449 5.449 24 C 0.123 3.877 25 C -0.108 4.108 26 C -0.105 4.105 27 C -0.111 4.111 28 C -0.107 4.107 29 C -0.110 4.110 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.411 0.589 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.268 0.732 38 H 0.147 0.853 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.373 -7.102 -8.512 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.023 3.977 3 N -0.209 5.209 4 C -0.047 4.047 5 C -0.128 4.128 6 C 0.064 3.936 7 N -0.326 5.326 8 C 0.320 3.680 9 O -0.369 6.369 10 C -0.304 4.304 11 S 0.169 5.831 12 C -0.684 4.684 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.070 4.070 23 N -0.138 5.138 24 C 0.033 3.967 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.129 4.129 28 C -0.125 4.125 29 C -0.129 4.129 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.151 0.849 34 H 0.246 0.754 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.165 0.835 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -30.587 -8.124 -7.301 32.479 hybrid contribution 1.462 1.480 -1.118 2.361 sum -29.125 -6.644 -8.418 31.037 Atomic orbital electron populations 1.20374 0.84333 1.04633 1.04101 1.23708 0.95630 0.80074 0.98325 1.70407 1.00892 1.26752 1.22835 1.18544 0.91460 0.89754 1.04961 1.19768 0.87860 0.99596 1.05587 1.17371 0.85173 0.91034 1.00067 1.43670 1.09327 1.24596 1.54978 1.20521 0.84641 0.85198 0.77612 1.90716 1.84185 1.24164 1.37819 1.23545 0.96178 1.04134 1.06591 1.85407 1.00452 1.34759 1.62477 1.22903 0.95673 1.13126 1.36679 0.90754 1.25000 0.98501 0.95619 0.94476 1.70023 1.25689 1.24314 1.30223 0.86103 0.81209 0.79909 0.78202 1.19579 1.20545 1.20559 1.21018 0.98604 0.92321 0.99646 1.19801 0.88376 0.99520 1.03342 1.18873 0.84574 0.94890 1.08704 1.42571 1.04918 1.04410 1.61932 1.17593 1.00806 0.82833 0.95512 1.21313 0.99929 0.94221 0.97274 1.21136 0.97472 0.94740 0.98968 1.21334 0.97920 1.00184 0.93510 1.21087 0.99686 0.92931 0.98844 1.21212 0.98719 0.96278 0.96734 0.89445 0.90291 0.88475 0.84853 0.75353 0.88686 0.88781 0.92197 0.83491 0.85750 0.85162 0.84901 0.85231 0.85005 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.00 36.01 0.36 -0.13 16 2 C 0.29 3.20 7.79 -154.63 -1.20 2.00 16 3 N -0.49 -6.80 11.27 -8.19 -0.09 -6.89 16 4 C 0.07 1.02 7.22 -84.70 -0.61 0.41 16 5 C -0.11 -1.45 10.00 -39.05 -0.39 -1.84 16 6 C 0.16 2.34 6.27 -83.67 -0.52 1.82 16 7 N -0.68 -9.57 5.34 -9.86 -0.05 -9.62 16 8 C 0.53 9.73 7.58 -10.99 -0.08 9.65 16 9 O -0.50 -10.83 13.55 5.55 0.08 -10.76 16 10 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 11 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 12 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 13 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 16 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.09 -1.43 8.63 -39.34 -0.34 -1.77 16 21 C -0.09 -1.21 10.01 -39.54 -0.40 -1.60 16 22 C 0.04 0.48 6.79 -83.83 -0.57 -0.09 16 23 N -0.45 -5.13 2.84 -55.46 -0.16 -5.29 16 24 C 0.12 1.12 5.18 -83.62 -0.43 0.69 16 25 C -0.11 -0.90 9.92 -39.40 -0.39 -1.30 16 26 C -0.10 -0.65 10.04 -39.61 -0.40 -1.05 16 27 C -0.11 -0.58 10.04 -39.55 -0.40 -0.98 16 28 C -0.11 -0.57 10.04 -39.61 -0.40 -0.97 16 29 C -0.11 -0.78 9.73 -39.40 -0.38 -1.16 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.42 7.79 -51.93 -0.40 0.02 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.41 4.34 8.82 -40.82 -0.36 3.98 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.15 2.41 6.41 -52.49 -0.34 2.08 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 42 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 43 H 0.13 0.41 8.06 -52.48 -0.42 -0.02 16 44 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -36.12 396.16 -11.79 -47.91 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.30 Total: 3.24 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -5.74 Total: -11.87 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.43 Total: -46.99 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.12 -11.79 -47.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032947106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.011 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds