Wall clock time and date at job start Tue Mar 31 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30124 * 124.96211 * 2 1 4 4 C 1.35824 * 109.71511 * 180.02562 * 3 2 1 5 5 C 1.39712 * 133.46496 * 180.02562 * 4 3 2 6 6 C 1.38198 * 119.71689 * 179.97438 * 5 4 3 7 7 N 1.40098 * 119.81774 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00341 * 146.63651 * 7 6 5 9 9 O 1.21289 * 119.99952 * 354.72052 * 8 7 6 10 10 C 1.50701 * 119.99675 * 175.00098 * 8 7 6 11 11 S 1.80996 * 109.46791 * 179.72376 * 10 8 7 12 12 C 1.76199 * 100.00153 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99969 * 359.97438 * 12 11 10 14 14 C 1.38797 * 120.00027 * 180.02562 * 12 11 10 15 15 N 1.31631 * 120.00252 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99823 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46959 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46729 * 119.99912 * 16 14 12 19 19 H 1.48495 * 109.46917 * 239.99718 * 16 14 12 20 20 C 1.39366 * 120.37286 * 0.24821 * 6 5 4 21 21 C 1.37762 * 120.38191 * 359.50191 * 20 6 5 22 22 C 1.38807 * 119.92274 * 0.48492 * 21 20 6 23 23 N 1.36237 * 124.96074 * 180.02562 * 2 1 3 24 24 C 1.40118 * 126.38351 * 359.95358 * 23 2 1 25 25 C 1.38845 * 120.06540 * 244.74336 * 24 23 2 26 26 C 1.38120 * 119.92916 * 179.76448 * 25 24 23 27 27 C 1.38278 * 120.06641 * 0.51141 * 26 25 24 28 28 C 1.38277 * 120.13626 * 359.74009 * 27 26 25 29 29 C 1.38109 * 120.06941 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46823 * 89.97797 * 1 2 3 31 31 H 1.09002 * 109.46935 * 209.97686 * 1 2 3 32 32 H 1.08995 * 109.47021 * 329.97843 * 1 2 3 33 33 H 1.08008 * 120.14255 * 359.97438 * 5 4 3 34 34 H 0.96998 * 119.99261 * 326.63524 * 7 6 5 35 35 H 1.08994 * 109.47040 * 299.71929 * 10 8 7 36 36 H 1.08996 * 109.47256 * 59.72551 * 10 8 7 37 37 H 0.96999 * 119.99989 * 180.02562 * 15 14 12 38 38 H 1.07994 * 119.80943 * 179.72345 * 20 6 5 39 39 H 1.07997 * 120.03435 * 180.25447 * 21 20 6 40 40 H 1.08001 * 120.03493 * 0.02562 * 25 24 23 41 41 H 1.08003 * 119.96588 * 180.27298 * 26 25 24 42 42 H 1.07999 * 119.92777 * 179.72021 * 27 26 25 43 43 H 1.08006 * 119.96514 * 179.97438 * 28 27 26 44 44 H 1.08004 * 120.03509 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2527 1.0664 0.0000 4 6 3.5631 0.7092 -0.0006 5 6 4.7570 1.4348 -0.0004 6 6 5.9658 0.7649 -0.0006 7 7 7.1643 1.4904 -0.0009 8 6 8.2458 1.0055 0.6407 9 8 8.1563 -0.0099 1.2980 10 6 9.5647 1.7285 0.5466 11 16 10.8096 0.8408 1.5152 12 6 12.2087 1.8750 1.2365 13 1 12.1153 2.7542 0.6164 14 6 13.4311 1.5590 1.8129 15 7 13.5452 0.4870 2.5683 16 14 14.9146 2.6550 1.5168 17 1 14.5259 3.7873 0.6382 18 1 15.4080 3.1815 2.8147 19 1 15.9893 1.8670 0.8616 20 6 5.9993 -0.6283 -0.0062 21 6 4.8280 -1.3535 -0.0013 22 6 3.6060 -0.6951 -0.0009 23 7 2.2877 -1.1165 -0.0005 24 6 1.8395 -2.4441 -0.0002 25 6 2.1034 -3.2671 1.0864 26 6 1.6561 -4.5739 1.0859 27 6 0.9552 -5.0657 0.0001 28 6 0.6952 -4.2500 -1.0857 29 6 1.1357 -2.9410 -1.0891 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5141 33 1 4.7354 2.5147 0.0000 34 1 7.2157 2.3417 -0.4630 35 1 9.8802 1.7745 -0.4956 36 1 9.4534 2.7398 0.9376 37 1 14.3994 0.2664 2.9715 38 1 6.9490 -1.1425 -0.0109 39 1 4.8605 -2.4330 -0.0016 40 1 2.6543 -2.8847 1.9330 41 1 1.8573 -5.2133 1.9327 42 1 0.6103 -6.0892 0.0001 43 1 0.1479 -4.6371 -1.9325 44 1 0.9321 -2.3043 -1.9373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032947106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:58 Heat of formation + Delta-G solvation = 52.485976 kcal Electronic energy + Delta-G solvation = -28282.075876 eV Core-core repulsion = 24290.595511 eV Total energy + Delta-G solvation = -3991.480365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.48337 -41.31214 -40.08782 -38.38042 -35.49501 -35.30089 -34.58529 -32.39549 -31.94776 -31.79179 -30.71137 -29.84207 -28.06300 -27.59357 -24.49159 -23.97434 -23.62738 -23.02781 -21.71663 -21.10148 -19.91602 -19.10906 -18.93686 -18.10857 -17.38055 -17.17809 -17.06975 -16.88195 -16.57529 -15.97250 -15.85529 -15.60445 -15.21784 -15.12447 -14.83153 -14.62762 -14.50111 -14.41888 -14.23832 -14.05188 -13.75865 -13.64317 -13.38760 -13.17762 -13.11934 -12.92263 -12.79479 -12.60357 -12.45125 -12.26214 -11.72749 -11.70631 -11.20032 -11.17827 -11.15119 -10.92539 -10.28790 -10.06421 -9.93369 -9.23537 -8.90358 -8.66336 -8.35215 -6.12941 -0.24586 -0.00882 0.28192 0.29904 1.22584 1.41602 1.43052 1.45882 1.48500 1.57140 1.66348 2.08363 2.26375 2.61639 2.71905 2.99416 3.10055 3.28356 3.36946 3.75095 3.83148 3.84746 3.89382 4.14537 4.16906 4.17643 4.22858 4.28141 4.33907 4.38299 4.47330 4.49269 4.51261 4.61472 4.66276 4.89723 4.95252 4.97249 5.12170 5.15719 5.25141 5.31785 5.35900 5.40228 5.42919 5.45937 5.77689 5.80507 6.20201 6.25519 6.34120 6.73116 7.06307 7.07177 8.74149 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.001720 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.199011 B =16278.902839 C =17380.348300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.294 3.706 3 N -0.521 5.521 4 C 0.052 3.948 5 C -0.101 4.101 6 C 0.147 3.853 7 N -0.655 5.655 8 C 0.537 3.463 9 O -0.539 6.539 10 C -0.129 4.129 11 S -0.146 6.146 12 C -0.545 4.545 13 H 0.085 0.915 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.256 1.256 18 H -0.275 1.275 19 H -0.274 1.274 20 C -0.113 4.113 21 C -0.085 4.085 22 C 0.024 3.976 23 N -0.446 5.446 24 C 0.095 3.905 25 C -0.125 4.125 26 C -0.107 4.107 27 C -0.104 4.104 28 C -0.101 4.101 29 C -0.111 4.111 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.152 0.848 34 H 0.429 0.571 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.271 0.729 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.113 0.887 41 H 0.149 0.851 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.664 -6.804 -10.207 34.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 N -0.242 5.242 4 C -0.066 4.066 5 C -0.123 4.123 6 C 0.050 3.950 7 N -0.303 5.303 8 C 0.325 3.675 9 O -0.415 6.415 10 C -0.280 4.280 11 S 0.082 5.918 12 C -0.693 4.693 13 H 0.103 0.897 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.820 3.180 17 H -0.180 1.180 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.134 4.134 21 C -0.106 4.106 22 C -0.083 4.083 23 N -0.133 5.133 24 C 0.006 3.994 25 C -0.144 4.144 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.131 4.131 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.169 0.831 34 H 0.269 0.731 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.131 0.869 41 H 0.167 0.833 42 H 0.176 0.824 43 H 0.179 0.821 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -32.932 -7.814 -9.029 35.030 hybrid contribution 1.881 1.266 -0.635 2.355 sum -31.050 -6.549 -9.664 33.172 Atomic orbital electron populations 1.20607 0.80981 1.05720 1.05891 1.24627 0.97325 0.79447 0.95619 1.70424 1.00632 1.28120 1.24997 1.18863 0.92195 0.90366 1.05188 1.19881 0.87294 1.00432 1.04701 1.17367 0.85321 0.90885 1.01377 1.43278 1.08157 1.24976 1.53857 1.20273 0.85107 0.84553 0.77587 1.90712 1.84773 1.25987 1.39982 1.23361 0.94382 1.03888 1.06348 1.85581 1.03590 1.37611 1.65059 1.23248 0.96069 1.13282 1.36711 0.89710 1.26121 1.01985 0.97103 0.93972 1.70184 1.26652 1.26418 1.31520 0.84906 0.76673 0.78002 0.78376 1.17979 1.20024 1.19984 1.20917 0.98303 0.92872 1.01341 1.19828 0.88167 0.99947 1.02675 1.19003 0.85671 0.94940 1.08690 1.42732 1.03978 1.05626 1.61006 1.17838 1.02689 0.81984 0.96896 1.21308 1.00820 0.95344 0.96956 1.21378 0.97177 0.93926 1.00094 1.21719 0.96451 1.01433 0.92611 1.21452 0.98843 0.91989 0.99661 1.21347 0.98330 0.97246 0.96143 0.87123 0.88852 0.87639 0.83083 0.73118 0.86442 0.86565 0.92006 0.85412 0.84797 0.86876 0.83342 0.82372 0.82135 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.00 71.24 0.71 -0.09 16 2 C 0.29 6.33 7.79 137.85 1.07 7.40 16 3 N -0.52 -14.33 11.27 -179.81 -2.03 -16.36 16 4 C 0.05 1.52 7.22 39.43 0.28 1.80 16 5 C -0.10 -2.78 10.00 22.62 0.23 -2.55 16 6 C 0.15 4.37 6.27 38.08 0.24 4.61 16 7 N -0.65 -18.26 5.34 -303.50 -1.62 -19.88 16 8 C 0.54 19.89 7.58 87.66 0.66 20.55 16 9 O -0.54 -24.58 13.55 -3.06 -0.04 -24.63 16 10 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 11 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 12 C -0.55 -30.83 9.50 67.95 0.65 -30.18 16 13 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 14 C 0.01 0.73 5.49 84.86 0.47 1.20 16 15 N -0.91 -55.78 13.22 21.65 0.29 -55.50 16 16 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 C -0.11 -3.59 8.63 22.43 0.19 -3.40 16 21 C -0.08 -2.42 10.01 22.29 0.22 -2.19 16 22 C 0.02 0.66 6.79 38.79 0.26 0.92 16 23 N -0.45 -10.07 2.84 -329.39 -0.94 -11.01 16 24 C 0.10 1.67 5.18 38.11 0.20 1.86 16 25 C -0.12 -2.06 9.92 22.39 0.22 -1.84 16 26 C -0.11 -1.17 10.04 22.25 0.22 -0.94 16 27 C -0.10 -0.76 10.04 22.29 0.22 -0.53 16 28 C -0.10 -0.76 10.04 22.25 0.22 -0.53 16 29 C -0.11 -1.35 9.73 22.39 0.22 -1.13 16 30 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.77 7.79 -2.39 -0.02 0.75 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 34 H 0.43 8.44 8.82 -92.71 -0.82 7.63 16 35 H 0.12 4.02 8.14 -2.40 -0.02 4.00 16 36 H 0.12 3.99 8.14 -2.40 -0.02 3.97 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.13 4.54 6.41 -2.91 -0.02 4.52 16 39 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.11 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 42 H 0.16 0.26 8.06 -2.91 -0.02 0.24 16 43 H 0.16 0.29 8.06 -2.91 -0.02 0.26 16 44 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -82.14 396.16 3.50 -78.65 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.23 Total: 21.90 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 6.74 Total: -9.58 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -4.30 Total: -102.75 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.04 Total: -24.63 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -82.14 3.50 -78.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032947106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.132 kcal (2) G-P(sol) polarization free energy of solvation -82.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds