Wall clock time and date at job start Tue Mar 31 2020 06:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 119.99789 * 2 1 4 4 N 1.46489 * 109.47219 * 125.00115 * 3 2 1 5 5 C 1.36617 * 119.77547 * 269.98187 * 4 3 2 6 6 S 1.76198 * 119.13119 * 359.97438 * 5 4 3 7 7 C 1.76201 * 100.00293 * 180.02562 * 6 5 4 8 8 H 1.07994 * 119.99574 * 0.02562 * 7 6 5 9 9 C 1.38783 * 119.99764 * 179.97438 * 7 6 5 10 10 N 1.31543 * 119.99980 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99474 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47459 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46775 * 120.00075 * 11 9 7 14 14 H 1.48498 * 109.46793 * 239.99633 * 11 9 7 15 15 N 1.31338 * 121.74435 * 179.74625 * 5 4 3 16 16 C 1.34282 * 120.93229 * 0.50567 * 15 5 4 17 17 C 1.46435 * 134.17730 * 179.84827 * 16 15 5 18 18 C 1.48284 * 126.64242 * 359.68490 * 17 16 15 19 19 C 1.39398 * 120.12721 * 309.73151 * 18 17 16 20 20 C 1.38002 * 119.87468 * 179.69503 * 19 18 17 21 21 C 1.38340 * 120.12020 * 0.59688 * 20 19 18 22 22 C 1.38333 * 120.25703 * 359.67629 * 21 20 19 23 23 C 1.38003 * 120.12534 * 0.02562 * 22 21 20 24 24 C 1.36159 * 106.72057 * 179.70981 * 17 16 15 25 25 N 1.35754 * 109.60484 * 359.97438 * 24 17 16 26 26 C 1.46497 * 124.96408 * 179.97438 * 25 24 17 27 27 C 1.37729 * 110.06646 * 0.02562 * 25 24 17 28 28 C 1.35089 * 119.77421 * 89.99839 * 4 3 2 29 29 O 1.21961 * 120.75456 * 359.97438 * 28 4 3 30 30 H 1.07996 * 120.00102 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99122 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00899 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.46770 * 4.99607 * 3 2 1 34 34 H 1.09001 * 109.47222 * 245.00324 * 3 2 1 35 35 H 0.96996 * 119.99560 * 180.02562 * 10 9 7 36 36 H 1.08005 * 120.06049 * 359.97348 * 19 18 17 37 37 H 1.07992 * 119.93931 * 180.29377 * 20 19 18 38 38 H 1.08002 * 119.86544 * 179.69834 * 21 20 19 39 39 H 1.07998 * 119.93144 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.05971 * 180.02562 * 23 22 21 41 41 H 1.08005 * 125.19918 * 180.02562 * 24 17 16 42 42 H 1.08997 * 109.47403 * 270.02562 * 26 25 24 43 43 H 1.09001 * 109.47054 * 30.03031 * 26 25 24 44 44 H 1.09003 * 109.46900 * 150.02550 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1313 5 6 2.5834 1.8304 2.3353 6 16 0.9356 2.4328 2.4977 7 6 0.9574 2.9322 4.1873 8 1 1.8544 2.8078 4.7756 9 6 -0.1779 3.4865 4.7617 10 7 -1.2701 3.6395 4.0447 11 14 -0.1545 4.0167 6.5528 12 1 1.1844 3.7415 7.1330 13 1 -0.4429 5.4707 6.6424 14 1 -1.1863 3.2600 7.3064 15 7 3.3834 1.8685 3.3763 16 6 4.6478 1.4242 3.2917 17 6 5.7627 1.3328 4.2367 18 6 5.7566 1.7602 5.6566 19 6 5.3041 3.0326 6.0023 20 6 5.2948 3.4227 7.3260 21 6 5.7449 2.5581 8.3077 22 6 6.2004 1.2964 7.9699 23 6 6.2085 0.8933 6.6501 24 6 6.8062 0.7799 3.5591 25 7 6.4330 0.5218 2.2796 26 6 7.2966 -0.0736 1.2570 27 6 5.1240 0.9025 2.0833 28 6 4.2515 0.8641 0.9768 29 8 4.6236 0.4178 -0.0955 30 1 -0.5400 0.9353 0.0004 31 1 -0.5399 -0.9354 -0.0004 32 1 1.8501 -0.9352 -0.0004 33 1 1.3585 2.1317 0.0895 34 1 2.6212 1.4028 -0.9314 35 1 -2.0634 4.0272 4.4461 36 1 4.9573 3.7102 5.2361 37 1 4.9400 4.4064 7.5955 38 1 5.7404 2.8695 9.3419 39 1 6.5502 0.6255 8.7406 40 1 6.5639 -0.0922 6.3876 41 1 7.7817 0.5769 3.9760 42 1 7.8250 0.7161 0.7230 43 1 8.0191 -0.7368 1.7328 44 1 6.6883 -0.6432 0.5544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033114625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:15 Heat of formation + Delta-G solvation = 86.335859 kcal Electronic energy + Delta-G solvation = -30269.930121 eV Core-core repulsion = 26279.917598 eV Total energy + Delta-G solvation = -3990.012524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58871 -39.50652 -38.43795 -36.86700 -35.11650 -33.00204 -32.76188 -32.03880 -30.57534 -30.26820 -28.83889 -26.59006 -25.96140 -25.64527 -23.79207 -22.70847 -22.14621 -21.73815 -19.77885 -19.62477 -18.48162 -17.80778 -17.06111 -16.72594 -16.16450 -15.95639 -15.39990 -15.00287 -14.90271 -14.83765 -14.53934 -14.37006 -14.06582 -13.98967 -13.22182 -13.11260 -13.10012 -13.01144 -12.92710 -12.57996 -12.40419 -12.16543 -12.00078 -11.81518 -11.35079 -11.21301 -11.14947 -11.03303 -10.92160 -10.74512 -10.30506 -9.77711 -9.53940 -9.38498 -9.34930 -9.03581 -8.92137 -8.72799 -8.59905 -8.01291 -7.68042 -6.65520 -6.56243 -4.29529 1.39943 1.47761 1.75323 2.13314 2.21132 2.48676 2.92108 3.03920 3.14355 3.20443 3.31073 3.43179 3.93807 4.11113 4.28122 4.66936 4.76159 4.87115 4.90978 5.01615 5.09369 5.16893 5.19640 5.21843 5.26444 5.28612 5.40660 5.47312 5.56621 5.63936 5.75217 5.82376 5.87713 5.91757 6.05543 6.11774 6.25330 6.38836 6.42212 6.74953 6.79477 6.82403 6.85930 6.87727 6.99486 7.12084 7.26306 7.33255 7.40963 7.53084 8.28039 8.40672 8.68822 8.98964 10.51442 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.006154 B = 0.005766 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4548.548091 B = 4854.525214 C = 9016.813570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.177 4.177 3 C 0.126 3.874 4 N -0.515 5.515 5 C 0.318 3.682 6 S 0.164 5.836 7 C -0.533 4.533 8 H 0.118 0.882 9 C 0.078 3.922 10 N -0.874 5.874 11 Si 0.927 3.073 12 H -0.261 1.261 13 H -0.278 1.278 14 H -0.278 1.278 15 N -0.505 5.505 16 C 0.171 3.829 17 C -0.147 4.147 18 C 0.012 3.988 19 C -0.090 4.090 20 C -0.118 4.118 21 C -0.131 4.131 22 C -0.125 4.125 23 C -0.118 4.118 24 C 0.078 3.922 25 N -0.426 5.426 26 C 0.077 3.923 27 C -0.139 4.139 28 C 0.570 3.430 29 O -0.566 6.566 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.275 0.725 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.175 0.825 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.827 -4.609 -0.738 12.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.196 4.196 3 C 0.004 3.996 4 N -0.238 5.238 5 C -0.049 4.049 6 S 0.405 5.595 7 C -0.682 4.682 8 H 0.135 0.865 9 C -0.132 4.132 10 N -0.509 5.509 11 Si 0.752 3.248 12 H -0.184 1.184 13 H -0.204 1.204 14 H -0.204 1.204 15 N -0.232 5.232 16 C 0.044 3.956 17 C -0.158 4.158 18 C 0.011 3.989 19 C -0.108 4.108 20 C -0.136 4.136 21 C -0.149 4.149 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.057 4.057 25 N -0.104 5.104 26 C -0.064 4.064 27 C -0.253 4.253 28 C 0.367 3.633 29 O -0.449 6.449 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.192 0.808 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.861 -4.566 -1.719 11.907 hybrid contribution 1.225 -0.179 1.232 1.747 sum 12.086 -4.745 -0.487 12.994 Atomic orbital electron populations 1.23936 0.95440 1.02534 0.97435 1.22956 0.96174 0.97852 1.02591 1.20950 0.91961 0.97543 0.89174 1.46224 1.11959 1.53880 1.11760 1.26430 1.03583 0.93606 0.81263 1.83530 0.93309 1.64958 1.17721 1.23626 1.03257 1.46345 0.94958 0.86451 1.25126 0.94051 0.94035 0.99995 1.69912 1.02396 1.41452 1.37115 0.85942 0.79197 0.78183 0.81498 1.18432 1.20370 1.20381 1.68488 1.02523 1.27618 1.24568 1.19878 0.90763 0.94417 0.90557 1.18457 0.92076 1.12412 0.92859 1.17975 0.97731 0.93211 0.90001 1.21266 0.97590 0.95672 0.96258 1.21075 0.99711 0.99821 0.92985 1.21082 1.00414 0.94488 0.98945 1.20940 1.01073 0.96355 0.95910 1.21125 1.01174 0.98892 0.92430 1.21799 0.99181 1.01507 0.83180 1.43003 1.08769 1.49080 1.09527 1.22059 0.94449 0.98766 0.91167 1.19485 0.88353 1.19544 0.97908 1.15614 0.80945 0.79344 0.87365 1.90816 1.75983 1.49607 1.28486 0.87516 0.88164 0.87424 0.87895 0.88039 0.91554 0.85812 0.86331 0.86710 0.86590 0.86502 0.80819 0.91271 0.90246 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 14.32 29.01 0.42 -1.74 16 2 C -0.18 -2.72 9.85 -36.02 -0.35 -3.07 16 3 C 0.13 2.09 5.33 -5.20 -0.03 2.06 16 4 N -0.51 -10.20 2.60 -120.70 -0.31 -10.51 16 5 C 0.32 6.99 7.77 -88.22 -0.69 6.31 16 6 S 0.16 3.77 19.57 -107.50 -2.10 1.66 16 7 C -0.53 -13.92 9.24 30.93 0.29 -13.64 16 8 H 0.12 3.18 6.51 -52.49 -0.34 2.84 16 9 C 0.08 2.00 5.49 -17.47 -0.10 1.90 16 10 N -0.87 -23.04 13.22 55.49 0.73 -22.31 16 11 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 12 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 N -0.50 -11.60 8.47 -9.54 -0.08 -11.68 16 16 C 0.17 3.55 7.50 -82.85 -0.62 2.93 16 17 C -0.15 -2.58 5.75 -103.21 -0.59 -3.17 16 18 C 0.01 0.19 5.79 -104.90 -0.61 -0.41 16 19 C -0.09 -1.54 9.76 -39.24 -0.38 -1.93 16 20 C -0.12 -1.80 10.03 -39.63 -0.40 -2.19 16 21 C -0.13 -1.78 10.04 -39.51 -0.40 -2.17 16 22 C -0.12 -1.63 10.03 -39.63 -0.40 -2.03 16 23 C -0.12 -1.68 9.72 -39.24 -0.38 -2.06 16 24 C 0.08 1.11 11.17 -16.56 -0.19 0.92 16 25 N -0.43 -6.67 3.15 -121.21 -0.38 -7.05 16 26 C 0.08 0.90 10.79 59.85 0.65 1.55 16 27 C -0.14 -2.73 6.85 -83.54 -0.57 -3.30 16 28 C 0.57 11.60 7.45 -15.09 -0.11 11.49 16 29 O -0.57 -11.69 15.34 4.95 0.08 -11.61 16 30 H 0.11 1.46 7.84 -52.49 -0.41 1.05 16 31 H 0.10 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.10 1.64 6.18 -51.93 -0.32 1.32 16 34 H 0.10 1.58 7.44 -51.93 -0.39 1.20 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 37 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.17 1.69 8.06 -52.48 -0.42 1.26 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 44 H 0.09 1.22 7.01 -51.93 -0.36 0.86 16 LS Contribution 394.13 15.07 5.94 5.94 Total: -1.00 -31.32 394.13 -10.81 -42.13 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.19 Total: 6.64 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -4.46 Total: -8.56 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.04 Total: -51.55 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.10 Total: 1.66 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.32 -10.81 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033114625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.467 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds