Wall clock time and date at job start Tue Mar 31 2020 06:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 119.99789 * 2 1 4 4 N 1.46489 * 109.47219 * 125.00115 * 3 2 1 5 5 C 1.36617 * 119.77547 * 269.98187 * 4 3 2 6 6 S 1.76198 * 119.13119 * 359.97438 * 5 4 3 7 7 C 1.76201 * 100.00293 * 180.02562 * 6 5 4 8 8 H 1.07994 * 119.99574 * 0.02562 * 7 6 5 9 9 C 1.38783 * 119.99764 * 179.97438 * 7 6 5 10 10 N 1.31543 * 119.99980 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99474 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47459 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46775 * 120.00075 * 11 9 7 14 14 H 1.48498 * 109.46793 * 239.99633 * 11 9 7 15 15 N 1.31338 * 121.74435 * 179.74625 * 5 4 3 16 16 C 1.34282 * 120.93229 * 0.50567 * 15 5 4 17 17 C 1.46435 * 134.17730 * 179.84827 * 16 15 5 18 18 C 1.48284 * 126.64242 * 359.68490 * 17 16 15 19 19 C 1.39398 * 120.12721 * 309.73151 * 18 17 16 20 20 C 1.38002 * 119.87468 * 179.69503 * 19 18 17 21 21 C 1.38340 * 120.12020 * 0.59688 * 20 19 18 22 22 C 1.38333 * 120.25703 * 359.67629 * 21 20 19 23 23 C 1.38003 * 120.12534 * 0.02562 * 22 21 20 24 24 C 1.36159 * 106.72057 * 179.70981 * 17 16 15 25 25 N 1.35754 * 109.60484 * 359.97438 * 24 17 16 26 26 C 1.46497 * 124.96408 * 179.97438 * 25 24 17 27 27 C 1.37729 * 110.06646 * 0.02562 * 25 24 17 28 28 C 1.35089 * 119.77421 * 89.99839 * 4 3 2 29 29 O 1.21961 * 120.75456 * 359.97438 * 28 4 3 30 30 H 1.07996 * 120.00102 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99122 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00899 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.46770 * 4.99607 * 3 2 1 34 34 H 1.09001 * 109.47222 * 245.00324 * 3 2 1 35 35 H 0.96996 * 119.99560 * 180.02562 * 10 9 7 36 36 H 1.08005 * 120.06049 * 359.97348 * 19 18 17 37 37 H 1.07992 * 119.93931 * 180.29377 * 20 19 18 38 38 H 1.08002 * 119.86544 * 179.69834 * 21 20 19 39 39 H 1.07998 * 119.93144 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.05971 * 180.02562 * 23 22 21 41 41 H 1.08005 * 125.19918 * 180.02562 * 24 17 16 42 42 H 1.08997 * 109.47403 * 270.02562 * 26 25 24 43 43 H 1.09001 * 109.47054 * 30.03031 * 26 25 24 44 44 H 1.09003 * 109.46900 * 150.02550 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1313 5 6 2.5834 1.8304 2.3353 6 16 0.9356 2.4328 2.4977 7 6 0.9574 2.9322 4.1873 8 1 1.8544 2.8078 4.7756 9 6 -0.1779 3.4865 4.7617 10 7 -1.2701 3.6395 4.0447 11 14 -0.1545 4.0167 6.5528 12 1 1.1844 3.7415 7.1330 13 1 -0.4429 5.4707 6.6424 14 1 -1.1863 3.2600 7.3064 15 7 3.3834 1.8685 3.3763 16 6 4.6478 1.4242 3.2917 17 6 5.7627 1.3328 4.2367 18 6 5.7566 1.7602 5.6566 19 6 5.3041 3.0326 6.0023 20 6 5.2948 3.4227 7.3260 21 6 5.7449 2.5581 8.3077 22 6 6.2004 1.2964 7.9699 23 6 6.2085 0.8933 6.6501 24 6 6.8062 0.7799 3.5591 25 7 6.4330 0.5218 2.2796 26 6 7.2966 -0.0736 1.2570 27 6 5.1240 0.9025 2.0833 28 6 4.2515 0.8641 0.9768 29 8 4.6236 0.4178 -0.0955 30 1 -0.5400 0.9353 0.0004 31 1 -0.5399 -0.9354 -0.0004 32 1 1.8501 -0.9352 -0.0004 33 1 1.3585 2.1317 0.0895 34 1 2.6212 1.4028 -0.9314 35 1 -2.0634 4.0272 4.4461 36 1 4.9573 3.7102 5.2361 37 1 4.9400 4.4064 7.5955 38 1 5.7404 2.8695 9.3419 39 1 6.5502 0.6255 8.7406 40 1 6.5639 -0.0922 6.3876 41 1 7.7817 0.5769 3.9760 42 1 7.8250 0.7161 0.7230 43 1 8.0191 -0.7368 1.7328 44 1 6.6883 -0.6432 0.5544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033114625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:14 Heat of formation + Delta-G solvation = 71.551695 kcal Electronic energy + Delta-G solvation = -30270.571211 eV Core-core repulsion = 26279.917598 eV Total energy + Delta-G solvation = -3990.653613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.04412 -40.90088 -39.58369 -38.45925 -36.49946 -34.70841 -34.23562 -33.39409 -31.70669 -31.53953 -30.16808 -28.01058 -27.61680 -27.09082 -25.24869 -24.10445 -23.30277 -22.94426 -21.07463 -21.02689 -19.99276 -19.35070 -18.58624 -18.20623 -17.40907 -17.37485 -16.93264 -16.74534 -16.18664 -16.07912 -15.76823 -15.62584 -15.44174 -15.36366 -14.88416 -14.48702 -14.27275 -14.18321 -14.12010 -14.09156 -13.48854 -13.39761 -13.29226 -13.13802 -13.05772 -12.95467 -12.90169 -12.31609 -12.07081 -12.03887 -11.86470 -11.35634 -11.27888 -10.98089 -10.83417 -10.75074 -10.31056 -10.05097 -9.73353 -9.62249 -9.01830 -8.49663 -8.28237 -6.25972 -0.14450 0.28626 0.61496 0.64168 0.69733 1.09770 1.38885 1.39201 1.55289 1.63830 1.69151 2.00280 2.18101 2.65905 2.94185 2.96817 3.04224 3.37898 3.49068 3.77123 3.86759 3.93667 4.01486 4.16378 4.17829 4.23115 4.32706 4.37434 4.38775 4.50005 4.56038 4.64084 4.67977 4.71471 4.83616 4.92863 4.99246 5.24035 5.25990 5.40239 5.47054 5.56765 5.61488 5.65687 5.70253 5.74279 5.80363 5.89484 6.20811 6.24161 6.36930 6.71281 7.00784 7.08254 8.59134 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.006154 B = 0.005766 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4548.548091 B = 4854.525214 C = 9016.813570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.194 4.194 3 C 0.123 3.877 4 N -0.513 5.513 5 C 0.313 3.687 6 S 0.153 5.847 7 C -0.556 4.556 8 H 0.098 0.902 9 C 0.038 3.962 10 N -0.900 5.900 11 Si 0.982 3.018 12 H -0.269 1.269 13 H -0.267 1.267 14 H -0.269 1.269 15 N -0.526 5.526 16 C 0.129 3.871 17 C -0.170 4.170 18 C -0.008 4.008 19 C -0.119 4.119 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.117 4.117 24 C 0.113 3.887 25 N -0.421 5.421 26 C 0.072 3.928 27 C -0.153 4.153 28 C 0.560 3.440 29 O -0.575 6.575 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.279 0.721 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.232 0.768 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.353 -6.290 0.897 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.213 4.213 3 C 0.001 3.999 4 N -0.236 5.236 5 C -0.056 4.056 6 S 0.392 5.608 7 C -0.704 4.704 8 H 0.116 0.884 9 C -0.169 4.169 10 N -0.536 5.536 11 Si 0.805 3.195 12 H -0.193 1.193 13 H -0.192 1.192 14 H -0.194 1.194 15 N -0.253 5.253 16 C 0.003 3.997 17 C -0.179 4.179 18 C -0.008 4.008 19 C -0.137 4.137 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.135 4.135 24 C -0.023 4.023 25 N -0.097 5.097 26 C -0.068 4.068 27 C -0.267 4.267 28 C 0.358 3.642 29 O -0.460 6.460 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.162 0.838 39 H 0.171 0.829 40 H 0.160 0.840 41 H 0.248 0.752 42 H 0.101 0.899 43 H 0.145 0.855 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.438 -6.265 -0.104 14.827 hybrid contribution 0.676 0.258 0.697 1.005 sum 14.114 -6.007 0.592 15.350 Atomic orbital electron populations 1.24147 0.94912 1.03663 0.94852 1.22840 0.96645 0.96927 1.04921 1.21138 0.91804 0.98513 0.88397 1.46310 1.12418 1.53144 1.11715 1.26201 1.03145 0.94189 0.82069 1.83192 0.94644 1.66837 1.16171 1.23673 1.02887 1.47235 0.96621 0.88436 1.25827 0.93654 0.93954 1.03416 1.69960 1.02849 1.42278 1.38467 0.85126 0.78703 0.78369 0.77337 1.19343 1.19244 1.19391 1.68384 1.04031 1.27399 1.25527 1.20391 0.90829 0.95935 0.92556 1.18805 0.91968 1.13660 0.93495 1.18090 0.98993 0.93398 0.90352 1.21188 0.99656 0.96260 0.96620 1.21264 1.00252 1.00829 0.92680 1.21461 0.99096 0.94403 0.99850 1.21393 0.99518 0.96474 0.96292 1.21416 1.00366 0.99333 0.92355 1.22605 1.00011 0.97944 0.81779 1.43418 1.07598 1.47851 1.10873 1.22366 0.94185 0.99649 0.90588 1.19577 0.90290 1.19618 0.97218 1.15830 0.81220 0.79448 0.87657 1.90794 1.76149 1.50290 1.28741 0.87450 0.85892 0.87841 0.87688 0.87351 0.91102 0.89016 0.85725 0.83778 0.82937 0.83959 0.75211 0.89949 0.85474 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 14.32 67.78 0.97 -2.82 16 2 C -0.19 -6.10 9.85 25.65 0.25 -5.84 16 3 C 0.12 4.22 5.33 85.64 0.46 4.68 16 4 N -0.51 -21.18 2.60 -653.71 -1.70 -22.89 16 5 C 0.31 14.53 7.77 179.51 1.40 15.93 16 6 S 0.15 7.37 19.57 -56.49 -1.11 6.26 16 7 C -0.56 -30.47 9.24 67.95 0.63 -29.85 16 8 H 0.10 5.63 6.51 -2.91 -0.02 5.61 16 9 C 0.04 2.03 5.49 84.87 0.47 2.50 16 10 N -0.90 -48.57 13.22 21.64 0.29 -48.29 16 11 Si 0.98 42.75 29.55 68.60 2.03 44.78 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 15 N -0.53 -25.58 8.47 -184.08 -1.56 -27.14 16 16 C 0.13 5.51 7.50 41.33 0.31 5.82 16 17 C -0.17 -5.84 5.75 -18.95 -0.11 -5.94 16 18 C -0.01 -0.25 5.79 -20.05 -0.12 -0.37 16 19 C -0.12 -4.26 9.76 22.49 0.22 -4.04 16 20 C -0.13 -4.03 10.03 22.24 0.22 -3.80 16 21 C -0.13 -3.20 10.04 22.32 0.22 -2.98 16 22 C -0.12 -2.68 10.03 22.24 0.22 -2.46 16 23 C -0.12 -2.99 9.72 22.49 0.22 -2.77 16 24 C 0.11 2.83 11.17 83.60 0.93 3.77 16 25 N -0.42 -12.25 3.15 -537.41 -1.69 -13.94 16 26 C 0.07 1.44 10.79 127.77 1.38 2.82 16 27 C -0.15 -6.03 6.85 39.30 0.27 -5.76 16 28 C 0.56 23.35 7.45 84.86 0.63 23.98 16 29 O -0.58 -24.03 15.34 -5.19 -0.08 -24.11 16 30 H 0.11 2.95 7.84 -2.91 -0.02 2.93 16 31 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.10 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.11 3.52 6.18 -2.39 -0.01 3.50 16 34 H 0.11 3.50 7.44 -2.39 -0.02 3.48 16 35 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 36 H 0.09 3.74 8.06 -2.91 -0.02 3.72 16 37 H 0.12 3.46 8.06 -2.91 -0.02 3.43 16 38 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 40 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.23 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.13 1.37 8.13 -2.39 -0.02 1.35 16 44 H 0.07 1.81 7.01 -2.39 -0.02 1.79 16 Total: -1.00 -72.95 394.13 5.78 -67.16 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 1.03 Total: 25.30 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 8.58 Total: -7.13 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -4.67 Total: -112.25 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.08 Total: -24.11 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 7.37 SS G_CDS: -1.11 Total: 6.26 kcal Total: -72.95 5.78 -67.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033114625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.715 kcal (2) G-P(sol) polarization free energy of solvation -72.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds