Wall clock time and date at job start Tue Mar 31 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35954 * 116.99875 * 2 1 4 4 C 1.38073 * 119.99994 * 0.26253 * 3 2 1 5 5 C 1.39983 * 119.83555 * 180.22844 * 4 3 2 6 6 C 1.46960 * 120.07580 * 179.76551 * 5 4 3 7 7 C 1.35053 * 119.99729 * 136.49868 * 6 5 4 8 8 C 1.46206 * 120.00182 * 348.41420 * 7 6 5 9 9 O 1.21738 * 120.00062 * 353.23047 * 8 7 6 10 10 N 1.34773 * 120.00218 * 173.22794 * 8 7 6 11 11 C 1.39816 * 120.00173 * 184.69797 * 10 8 7 12 12 C 1.38927 * 120.07258 * 325.65391 * 11 10 8 13 13 C 1.38082 * 119.92357 * 180.02562 * 12 11 10 14 14 C 1.38302 * 120.07555 * 359.97438 * 13 12 11 15 15 C 1.38269 * 120.14821 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.96222 * 180.02562 * 15 14 13 17 17 C 1.38125 * 120.07032 * 359.71394 * 15 14 13 18 18 C 1.50707 * 120.03375 * 180.27725 * 17 15 14 19 19 C 1.40032 * 119.84511 * 359.48867 * 5 4 3 20 20 C 1.37653 * 119.99531 * 0.27867 * 19 5 4 21 21 C 1.39056 * 120.16329 * 359.97438 * 20 19 5 22 22 O 1.35610 * 119.92277 * 180.02562 * 21 20 19 23 23 C 1.34758 * 116.99714 * 6.03200 * 22 21 20 24 24 H 1.08002 * 120.00595 * 5.40530 * 23 22 21 25 25 C 1.38707 * 120.00101 * 185.40648 * 23 22 21 26 26 N 1.31521 * 119.99669 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00156 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46950 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47090 * 120.00093 * 27 25 23 30 30 H 1.48505 * 109.47006 * 239.99726 * 27 25 23 31 31 H 1.08999 * 109.46664 * 299.99789 * 1 2 3 32 32 H 1.08996 * 109.47019 * 59.99361 * 1 2 3 33 33 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 34 34 H 1.08005 * 120.08596 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.00337 * 316.48466 * 6 5 4 36 36 H 1.08000 * 119.99646 * 168.69997 * 7 6 5 37 37 H 0.97002 * 119.99917 * 4.69934 * 10 8 7 38 38 H 1.07996 * 120.03353 * 359.97438 * 12 11 10 39 39 H 1.07998 * 119.96055 * 180.02562 * 13 12 11 40 40 H 1.08004 * 119.92542 * 180.02562 * 14 13 12 41 41 H 1.08993 * 109.47282 * 89.99611 * 16 15 14 42 42 H 1.09003 * 109.46637 * 209.99667 * 16 15 14 43 43 H 1.09002 * 109.46836 * 329.99097 * 16 15 14 44 44 H 1.08996 * 109.47151 * 270.27912 * 18 17 15 45 45 H 1.08999 * 109.47018 * 30.28094 * 18 17 15 46 46 H 1.09006 * 109.46493 * 150.28209 * 18 17 15 47 47 H 1.07992 * 120.00534 * 180.25147 * 19 5 4 48 48 H 1.07999 * 119.91511 * 180.02562 * 20 19 5 49 49 H 0.97009 * 119.99668 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3693 0.0055 5 6 1.9333 3.6148 0.0006 6 6 1.1380 4.8506 0.0012 7 6 1.4891 5.8791 0.8030 8 6 2.4939 5.6824 1.8468 9 8 2.9238 4.5666 2.0753 10 7 2.9441 6.7363 2.5560 11 6 3.9745 6.5647 3.4853 12 6 4.0694 5.3829 4.2093 13 6 5.0879 5.2169 5.1267 14 6 6.0134 6.2254 5.3248 15 6 5.9219 7.4029 4.6059 16 6 6.9329 8.4989 4.8247 17 6 4.9086 7.5733 3.6828 18 6 4.8134 8.8546 2.8951 19 6 3.3321 3.6803 0.0011 20 6 4.0753 2.5217 0.0005 21 6 3.4406 1.2844 0.0000 22 8 4.1776 0.1461 -0.0001 23 6 5.5124 0.2815 0.1265 24 1 5.9415 1.2555 0.3095 25 6 6.3353 -0.8302 0.0219 26 7 5.8127 -2.0165 -0.2005 27 14 8.1856 -0.6424 0.1967 28 1 8.5175 0.7844 0.4400 29 1 8.6607 -1.4635 1.3391 30 1 8.8495 -1.0988 -1.0509 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2156 2.3144 0.0102 35 1 0.2730 4.9365 -0.6397 36 1 1.0243 6.8457 0.6762 37 1 2.5533 7.6139 2.4216 38 1 3.3468 4.5952 4.0554 39 1 5.1625 4.2982 5.6896 40 1 6.8094 6.0929 6.0427 41 1 7.7719 8.3607 4.1428 42 1 6.4669 9.4660 4.6361 43 1 7.2911 8.4626 5.8535 44 1 4.1965 9.5702 3.4387 45 1 5.8115 9.2691 2.7535 46 1 4.3632 8.6511 1.9235 47 1 3.8278 4.6398 0.0014 48 1 5.1541 2.5738 0.0012 49 1 6.3883 -2.7939 -0.2741 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033467021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:32 Heat of formation + Delta-G solvation = -14.238613 kcal Electronic energy + Delta-G solvation = -32764.982309 eV Core-core repulsion = 28431.396021 eV Total energy + Delta-G solvation = -4333.586288 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.64167 -39.54248 -38.72648 -37.45868 -36.27971 -34.74085 -33.42598 -32.96225 -32.14339 -30.82899 -29.45888 -28.55129 -27.45164 -26.48079 -26.31429 -25.35040 -23.93077 -21.92627 -21.47314 -21.15435 -20.50846 -19.30002 -17.99475 -17.85891 -16.99519 -16.60322 -16.13153 -15.78905 -15.46891 -15.19550 -15.06106 -14.79247 -14.46944 -14.21050 -14.02434 -13.86318 -13.63944 -13.40523 -13.38925 -13.28319 -13.02026 -12.99186 -12.76394 -12.53831 -12.26215 -12.24849 -11.90940 -11.66500 -11.54422 -11.39662 -11.32566 -11.09608 -10.99945 -10.87193 -10.59547 -10.46115 -10.32869 -10.14766 -9.53208 -9.35803 -9.12774 -8.67841 -8.50832 -8.02039 -7.69457 -6.65242 -6.43867 -3.95343 1.01900 1.40490 1.48196 2.33062 2.64520 3.15609 3.16300 3.20016 3.22406 3.45975 3.85555 3.98318 4.11435 4.62029 4.71626 4.79552 4.93737 4.99218 5.06270 5.10000 5.13861 5.18479 5.31337 5.36521 5.46109 5.48127 5.51916 5.56533 5.60799 5.62211 5.65566 5.73240 5.77412 5.84228 5.88106 5.90658 6.10971 6.19194 6.27490 6.36825 6.44645 6.49949 6.56809 6.62664 6.67037 6.71245 7.02966 7.14792 7.16320 7.28975 7.44191 7.53555 7.70764 7.98537 8.27555 8.38869 9.00830 9.72958 10.73198 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.007509 B = 0.003295 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3728.155787 B = 8496.931137 C =11279.584328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.038 3.962 4 C -0.133 4.133 5 C -0.166 4.166 6 C 0.034 3.966 7 C -0.268 4.268 8 C 0.537 3.463 9 O -0.490 6.490 10 N -0.676 5.676 11 C 0.156 3.844 12 C -0.120 4.120 13 C -0.102 4.102 14 C -0.137 4.137 15 C -0.075 4.075 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.113 4.113 19 C -0.005 4.005 20 C -0.222 4.222 21 C 0.154 3.846 22 O -0.156 6.156 23 C -0.386 4.386 24 H 0.094 0.906 25 C 0.040 3.960 26 N -0.852 5.852 27 Si 0.940 3.060 28 H -0.265 1.265 29 H -0.275 1.275 30 H -0.275 1.275 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.405 0.595 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.098 0.902 48 H 0.131 0.869 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 21.282 5.928 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.007 4.007 4 C -0.152 4.152 5 C -0.167 4.167 6 C 0.015 3.985 7 C -0.289 4.289 8 C 0.329 3.671 9 O -0.364 6.364 10 N -0.322 5.322 11 C 0.062 3.938 12 C -0.140 4.140 13 C -0.120 4.120 14 C -0.156 4.156 15 C -0.075 4.075 16 C -0.169 4.169 17 C -0.124 4.124 18 C -0.169 4.169 19 C -0.024 4.024 20 C -0.242 4.242 21 C 0.098 3.902 22 O -0.058 6.058 23 C -0.462 4.462 24 H 0.112 0.888 25 C -0.165 4.165 26 N -0.486 5.486 27 Si 0.765 3.235 28 H -0.190 1.190 29 H -0.200 1.200 30 H -0.201 1.201 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.240 0.760 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.149 0.851 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.659 19.755 5.975 21.400 hybrid contribution 0.445 0.767 0.077 0.890 sum -5.213 20.521 6.052 22.021 Atomic orbital electron populations 1.22851 0.80673 1.02730 1.00075 1.86225 1.19143 1.26462 1.90096 1.17917 0.89325 0.84371 1.09053 1.20657 0.97957 0.90917 1.05673 1.18014 0.92821 0.91218 1.14627 1.22324 0.93706 0.91231 0.91273 1.22493 1.05052 1.00508 1.00896 1.18639 0.81988 0.84216 0.82266 1.91007 1.56087 1.22610 1.66701 1.43549 1.36341 1.12553 1.39711 1.17541 0.89652 0.95358 0.91274 1.21379 1.00300 0.97591 0.94778 1.21064 0.94530 0.98687 0.97750 1.20961 0.99945 0.93550 1.01156 1.19494 0.95952 0.95848 0.96247 1.20787 0.97466 0.96562 1.02079 1.19463 0.95399 0.97121 1.00403 1.20721 1.02840 0.94326 0.99056 1.20493 0.91920 0.96519 0.93448 1.20724 1.00335 0.90850 1.12277 1.18831 0.88254 0.87531 0.95539 1.83998 1.19569 1.25659 1.76564 1.21489 0.78704 0.96281 1.49742 0.88846 1.25333 1.00450 0.94291 0.96472 1.70067 1.36017 0.98638 1.43891 0.85651 0.80568 0.78982 0.78309 1.18953 1.20032 1.20064 0.93765 0.93737 0.89241 0.86518 0.85848 0.85844 0.76007 0.84043 0.85838 0.86315 0.91246 0.91543 0.91656 0.91508 0.91119 0.91771 0.88343 0.85148 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 16 2 O -0.30 -6.95 10.28 -34.21 -0.35 -7.30 16 3 C 0.04 0.88 6.70 -39.13 -0.26 0.62 16 4 C -0.13 -2.54 8.77 -38.99 -0.34 -2.88 16 5 C -0.17 -3.02 4.54 -105.04 -0.48 -3.49 16 6 C 0.03 0.46 9.80 -37.18 -0.36 0.10 16 7 C -0.27 -3.23 9.90 -37.52 -0.37 -3.60 16 8 C 0.54 7.87 6.61 -13.06 -0.09 7.78 16 9 O -0.49 -9.32 9.56 5.16 0.05 -9.27 16 10 N -0.68 -8.03 4.74 -11.18 -0.05 -8.09 16 11 C 0.16 2.12 6.29 -83.72 -0.53 1.59 16 12 C -0.12 -1.84 8.70 -39.38 -0.34 -2.19 16 13 C -0.10 -1.39 10.04 -39.61 -0.40 -1.79 16 14 C -0.14 -1.66 9.70 -39.55 -0.38 -2.04 16 15 C -0.07 -0.85 5.88 -104.65 -0.62 -1.46 16 16 C -0.11 -0.91 9.18 36.01 0.33 -0.58 16 17 C -0.12 -1.41 5.90 -104.42 -0.62 -2.03 16 18 C -0.11 -0.93 8.65 36.01 0.31 -0.62 16 19 C -0.01 -0.10 6.59 -39.12 -0.26 -0.36 16 20 C -0.22 -5.24 9.11 -39.49 -0.36 -5.60 16 21 C 0.15 4.02 6.67 -38.76 -0.26 3.76 16 22 O -0.16 -4.71 9.52 -13.93 -0.13 -4.84 16 23 C -0.39 -11.23 9.43 30.91 0.29 -10.93 16 24 H 0.09 2.55 5.28 -52.49 -0.28 2.27 16 25 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 26 N -0.85 -25.62 13.67 55.48 0.76 -24.87 16 27 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 28 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 29 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 30 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 31 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 32 H 0.04 0.61 7.67 -51.93 -0.40 0.21 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.12 1.84 6.28 -52.48 -0.33 1.51 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.40 3.37 7.82 -40.82 -0.32 3.05 16 38 H 0.14 2.46 6.16 -52.49 -0.32 2.14 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.45 6.72 -51.93 -0.35 0.10 16 43 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.53 6.72 -51.93 -0.35 0.18 16 46 H 0.06 0.52 7.17 -51.93 -0.37 0.14 16 47 H 0.10 1.87 7.00 -52.49 -0.37 1.50 16 48 H 0.13 3.10 5.70 -52.49 -0.30 2.80 16 49 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 403.63 15.07 6.08 6.08 Total: -1.00 -35.74 403.63 -8.80 -44.54 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.30 Total: 8.87 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -3.83 Total: -21.21 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.71 Total: -32.95 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.44 Total: -21.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.74 -8.80 -44.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033467021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.299 kcal (2) G-P(sol) polarization free energy of solvation -35.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds