Wall clock time and date at job start Tue Mar 31 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35954 * 116.99875 * 2 1 4 4 C 1.38073 * 119.99994 * 0.26253 * 3 2 1 5 5 C 1.39983 * 119.83555 * 180.22844 * 4 3 2 6 6 C 1.46960 * 120.07580 * 179.76551 * 5 4 3 7 7 C 1.35053 * 119.99729 * 136.49868 * 6 5 4 8 8 C 1.46206 * 120.00182 * 348.41420 * 7 6 5 9 9 O 1.21738 * 120.00062 * 353.23047 * 8 7 6 10 10 N 1.34773 * 120.00218 * 173.22794 * 8 7 6 11 11 C 1.39816 * 120.00173 * 184.69797 * 10 8 7 12 12 C 1.38927 * 120.07258 * 325.65391 * 11 10 8 13 13 C 1.38082 * 119.92357 * 180.02562 * 12 11 10 14 14 C 1.38302 * 120.07555 * 359.97438 * 13 12 11 15 15 C 1.38269 * 120.14821 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.96222 * 180.02562 * 15 14 13 17 17 C 1.38125 * 120.07032 * 359.71394 * 15 14 13 18 18 C 1.50707 * 120.03375 * 180.27725 * 17 15 14 19 19 C 1.40032 * 119.84511 * 359.48867 * 5 4 3 20 20 C 1.37653 * 119.99531 * 0.27867 * 19 5 4 21 21 C 1.39056 * 120.16329 * 359.97438 * 20 19 5 22 22 O 1.35610 * 119.92277 * 180.02562 * 21 20 19 23 23 C 1.34758 * 116.99714 * 6.03200 * 22 21 20 24 24 H 1.08002 * 120.00595 * 5.40530 * 23 22 21 25 25 C 1.38707 * 120.00101 * 185.40648 * 23 22 21 26 26 N 1.31521 * 119.99669 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00156 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46950 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47090 * 120.00093 * 27 25 23 30 30 H 1.48505 * 109.47006 * 239.99726 * 27 25 23 31 31 H 1.08999 * 109.46664 * 299.99789 * 1 2 3 32 32 H 1.08996 * 109.47019 * 59.99361 * 1 2 3 33 33 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 34 34 H 1.08005 * 120.08596 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.00337 * 316.48466 * 6 5 4 36 36 H 1.08000 * 119.99646 * 168.69997 * 7 6 5 37 37 H 0.97002 * 119.99917 * 4.69934 * 10 8 7 38 38 H 1.07996 * 120.03353 * 359.97438 * 12 11 10 39 39 H 1.07998 * 119.96055 * 180.02562 * 13 12 11 40 40 H 1.08004 * 119.92542 * 180.02562 * 14 13 12 41 41 H 1.08993 * 109.47282 * 89.99611 * 16 15 14 42 42 H 1.09003 * 109.46637 * 209.99667 * 16 15 14 43 43 H 1.09002 * 109.46836 * 329.99097 * 16 15 14 44 44 H 1.08996 * 109.47151 * 270.27912 * 18 17 15 45 45 H 1.08999 * 109.47018 * 30.28094 * 18 17 15 46 46 H 1.09006 * 109.46493 * 150.28209 * 18 17 15 47 47 H 1.07992 * 120.00534 * 180.25147 * 19 5 4 48 48 H 1.07999 * 119.91511 * 180.02562 * 20 19 5 49 49 H 0.97009 * 119.99668 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3693 0.0055 5 6 1.9333 3.6148 0.0006 6 6 1.1380 4.8506 0.0012 7 6 1.4891 5.8791 0.8030 8 6 2.4939 5.6824 1.8468 9 8 2.9238 4.5666 2.0753 10 7 2.9441 6.7363 2.5560 11 6 3.9745 6.5647 3.4853 12 6 4.0694 5.3829 4.2093 13 6 5.0879 5.2169 5.1267 14 6 6.0134 6.2254 5.3248 15 6 5.9219 7.4029 4.6059 16 6 6.9329 8.4989 4.8247 17 6 4.9086 7.5733 3.6828 18 6 4.8134 8.8546 2.8951 19 6 3.3321 3.6803 0.0011 20 6 4.0753 2.5217 0.0005 21 6 3.4406 1.2844 0.0000 22 8 4.1776 0.1461 -0.0001 23 6 5.5124 0.2815 0.1265 24 1 5.9415 1.2555 0.3095 25 6 6.3353 -0.8302 0.0219 26 7 5.8127 -2.0165 -0.2005 27 14 8.1856 -0.6424 0.1967 28 1 8.5175 0.7844 0.4400 29 1 8.6607 -1.4635 1.3391 30 1 8.8495 -1.0988 -1.0509 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2156 2.3144 0.0102 35 1 0.2730 4.9365 -0.6397 36 1 1.0243 6.8457 0.6762 37 1 2.5533 7.6139 2.4216 38 1 3.3468 4.5952 4.0554 39 1 5.1625 4.2982 5.6896 40 1 6.8094 6.0929 6.0427 41 1 7.7719 8.3607 4.1428 42 1 6.4669 9.4660 4.6361 43 1 7.2911 8.4626 5.8535 44 1 4.1965 9.5702 3.4387 45 1 5.8115 9.2691 2.7535 46 1 4.3632 8.6511 1.9235 47 1 3.8278 4.6398 0.0014 48 1 5.1541 2.5738 0.0012 49 1 6.3883 -2.7939 -0.2741 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033467021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:30 Heat of formation + Delta-G solvation = -37.136754 kcal Electronic energy + Delta-G solvation = -32765.975246 eV Core-core repulsion = 28431.396021 eV Total energy + Delta-G solvation = -4334.579226 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.77434 -41.14785 -39.88420 -39.24569 -37.81403 -35.90579 -34.61435 -34.26516 -33.88812 -31.80663 -31.13029 -30.01106 -28.36775 -27.80457 -27.36689 -27.16596 -25.18098 -23.31353 -23.17179 -22.12296 -21.69318 -20.49266 -19.89910 -19.40710 -18.29416 -17.89377 -17.56429 -16.92584 -16.75633 -16.61972 -16.54786 -16.33160 -15.91118 -15.56916 -15.23649 -15.14112 -15.08569 -14.91443 -14.78978 -14.46653 -14.09337 -13.93601 -13.84506 -13.59688 -13.50138 -13.40758 -13.14460 -12.95661 -12.80633 -12.76702 -12.75862 -12.52696 -12.31216 -12.17276 -12.03009 -11.90239 -11.81577 -11.42094 -11.20441 -10.89921 -10.63901 -10.28088 -9.46335 -9.44204 -8.95838 -8.48909 -8.37569 -6.12515 -0.17750 0.39068 0.43580 0.64269 1.08002 1.29561 1.40358 1.48889 2.14883 2.20053 2.34300 2.60925 2.82104 2.85069 3.16006 3.42514 3.81886 3.90042 3.92786 3.99488 4.09128 4.15758 4.21909 4.27725 4.33893 4.43680 4.47174 4.53703 4.57099 4.60305 4.70503 4.73663 4.77143 4.81851 4.87031 4.92570 4.93563 4.98116 5.06997 5.10473 5.16621 5.28384 5.33881 5.40179 5.49497 5.53740 5.57183 5.63346 5.68865 5.79433 5.94763 6.04717 6.15330 6.56785 6.67894 6.95036 7.30794 7.78782 8.74665 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.007509 B = 0.003295 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3728.155787 B = 8496.931137 C =11279.584328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.348 6.348 3 C 0.026 3.974 4 C -0.132 4.132 5 C -0.126 4.126 6 C 0.010 3.990 7 C -0.225 4.225 8 C 0.522 3.478 9 O -0.542 6.542 10 N -0.656 5.656 11 C 0.139 3.861 12 C -0.150 4.150 13 C -0.123 4.123 14 C -0.142 4.142 15 C -0.079 4.079 16 C -0.110 4.110 17 C -0.119 4.119 18 C -0.112 4.112 19 C -0.016 4.016 20 C -0.226 4.226 21 C 0.098 3.902 22 O -0.218 6.218 23 C -0.413 4.413 24 H 0.093 0.907 25 C -0.021 4.021 26 N -0.916 5.916 27 Si 1.018 2.982 28 H -0.257 1.257 29 H -0.265 1.265 30 H -0.261 1.261 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.161 0.839 35 H 0.177 0.823 36 H 0.183 0.817 37 H 0.425 0.575 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.112 0.888 48 H 0.112 0.888 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 27.398 5.884 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.263 6.263 3 C -0.018 4.018 4 C -0.150 4.150 5 C -0.127 4.127 6 C -0.009 4.009 7 C -0.245 4.245 8 C 0.315 3.685 9 O -0.420 6.420 10 N -0.302 5.302 11 C 0.044 3.956 12 C -0.170 4.170 13 C -0.142 4.142 14 C -0.160 4.160 15 C -0.080 4.080 16 C -0.167 4.167 17 C -0.122 4.122 18 C -0.168 4.168 19 C -0.035 4.035 20 C -0.246 4.246 21 C 0.047 3.953 22 O -0.125 6.125 23 C -0.489 4.489 24 H 0.110 0.890 25 C -0.219 4.219 26 N -0.554 5.554 27 Si 0.837 3.163 28 H -0.180 1.180 29 H -0.190 1.190 30 H -0.186 1.186 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.179 0.821 35 H 0.194 0.806 36 H 0.200 0.800 37 H 0.265 0.735 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.157 0.843 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.130 0.870 48 H 0.130 0.870 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.489 25.991 5.940 27.693 hybrid contribution 0.612 -0.606 0.252 0.897 sum -6.877 25.385 6.192 27.019 Atomic orbital electron populations 1.23247 0.77181 1.04805 1.02015 1.86169 1.22946 1.26994 1.90219 1.18293 0.88785 0.85999 1.08763 1.21155 0.99913 0.89707 1.04246 1.18670 0.92454 0.93493 1.08080 1.22617 0.95304 0.88779 0.94156 1.23010 1.01667 1.02142 0.97702 1.19374 0.82247 0.83946 0.82963 1.91034 1.58026 1.24897 1.68077 1.43350 1.35520 1.12995 1.38377 1.17668 0.90907 0.95318 0.91660 1.21264 1.00810 0.98120 0.96848 1.21187 0.95227 0.99596 0.98166 1.21258 0.99754 0.93444 1.01592 1.19988 0.96388 0.96279 0.95330 1.20858 0.96717 0.96043 1.03042 1.19890 0.94306 0.97829 1.00147 1.20825 1.04268 0.92799 0.98924 1.20638 0.93193 0.95596 0.94059 1.20777 0.99892 0.91693 1.12190 1.19459 0.89879 0.87570 0.98416 1.83955 1.19888 1.27640 1.80997 1.21827 0.79353 0.96751 1.51002 0.88977 1.26596 1.05857 0.93549 0.95871 1.70207 1.38059 0.99672 1.47424 0.84562 0.73517 0.79332 0.78924 1.18049 1.19005 1.18580 0.92017 0.91177 0.87450 0.82122 0.80585 0.79999 0.73533 0.87274 0.86095 0.84330 0.90667 0.89602 0.90485 0.89059 0.89893 0.91240 0.86960 0.87036 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.81 113.37 1.11 1.78 16 2 O -0.35 -16.65 10.28 -79.06 -0.81 -17.46 16 3 C 0.03 1.27 6.70 22.57 0.15 1.43 16 4 C -0.13 -4.85 8.77 22.65 0.20 -4.65 16 5 C -0.13 -4.31 4.54 -20.13 -0.09 -4.40 16 6 C 0.01 0.22 9.80 23.82 0.23 0.45 16 7 C -0.22 -4.03 9.90 23.61 0.23 -3.80 16 8 C 0.52 13.81 6.61 86.31 0.57 14.38 16 9 O -0.54 -20.63 9.56 -4.47 -0.04 -20.67 16 10 N -0.66 -13.58 4.74 -307.48 -1.46 -15.04 16 11 C 0.14 3.61 6.29 38.19 0.24 3.85 16 12 C -0.15 -4.82 8.70 22.40 0.19 -4.62 16 13 C -0.12 -3.56 10.04 22.25 0.22 -3.34 16 14 C -0.14 -3.34 9.70 22.29 0.22 -3.12 16 15 C -0.08 -1.61 5.88 -19.88 -0.12 -1.73 16 16 C -0.11 -1.39 9.18 71.24 0.65 -0.74 16 17 C -0.12 -2.46 5.90 -19.74 -0.12 -2.58 16 18 C -0.11 -1.34 8.65 71.24 0.62 -0.72 16 19 C -0.02 -0.67 6.59 22.57 0.15 -0.52 16 20 C -0.23 -11.49 9.11 22.33 0.20 -11.28 16 21 C 0.10 5.55 6.67 22.80 0.15 5.70 16 22 O -0.22 -14.63 9.52 -6.49 -0.06 -14.69 16 23 C -0.41 -26.51 9.43 67.93 0.64 -25.87 16 24 H 0.09 5.59 5.28 -2.91 -0.02 5.58 16 25 C -0.02 -1.29 5.49 84.85 0.47 -0.82 16 26 N -0.92 -59.86 13.67 21.62 0.30 -59.56 16 27 Si 1.02 46.35 29.55 68.60 2.03 48.37 16 28 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 30 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 31 H 0.06 1.64 7.65 -2.39 -0.02 1.63 16 32 H 0.07 1.76 7.67 -2.39 -0.02 1.74 16 33 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.16 4.41 6.28 -2.91 -0.02 4.39 16 35 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 37 H 0.43 4.98 7.82 -92.71 -0.73 4.25 16 38 H 0.11 4.15 6.16 -2.91 -0.02 4.13 16 39 H 0.12 3.34 8.06 -2.91 -0.02 3.31 16 40 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.77 6.72 -2.39 -0.02 0.76 16 43 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 44 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 0.84 6.72 -2.39 -0.02 0.82 16 46 H 0.07 0.78 7.17 -2.38 -0.02 0.76 16 47 H 0.11 4.20 7.00 -2.91 -0.02 4.18 16 48 H 0.11 5.90 5.70 -2.91 -0.02 5.88 16 49 H 0.27 16.19 8.31 -92.70 -0.77 15.42 16 Total: -1.00 -93.41 403.63 6.16 -87.25 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.28 Total: 32.40 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 5.93 Total: -40.60 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -1.16 Total: -74.60 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -0.92 Total: -52.83 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -93.41 6.16 -87.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033467021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.113 kcal (2) G-P(sol) polarization free energy of solvation -93.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds