Wall clock time and date at job start Tue Mar 31 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 119.99900 * 2 1 4 4 N 1.34775 * 119.99891 * 179.97438 * 2 1 3 5 5 C 1.39961 * 119.99991 * 185.21287 * 4 2 1 6 6 C 1.38987 * 120.00061 * 213.68125 * 5 4 2 7 7 C 1.38220 * 120.23400 * 180.02562 * 6 5 4 8 8 C 1.38015 * 120.21899 * 359.70451 * 7 6 5 9 9 C 1.39606 * 119.99219 * 0.54667 * 8 7 6 10 10 C 1.47807 * 120.11083 * 179.74522 * 9 8 7 11 11 O 1.21587 * 119.99878 * 179.72357 * 10 9 8 12 12 N 1.34771 * 120.00090 * 359.72850 * 10 9 8 13 13 N 1.40106 * 120.00143 * 179.97438 * 12 10 9 14 14 C 1.29776 * 120.00033 * 180.02562 * 13 12 10 15 15 C 1.47487 * 119.99536 * 179.97438 * 14 13 12 16 16 C 1.39759 * 120.12716 * 359.72835 * 15 14 13 17 17 C 1.37975 * 119.97902 * 179.73868 * 16 15 14 18 18 C 1.38257 * 120.23018 * 0.51151 * 17 16 15 19 19 C 1.38977 * 120.25002 * 359.76487 * 18 17 16 20 20 O 1.35756 * 119.99231 * 179.97438 * 19 18 17 21 21 C 1.34833 * 116.99949 * 185.93163 * 20 19 18 22 22 H 1.07995 * 119.99840 * 5.41458 * 21 20 19 23 23 C 1.38653 * 119.99918 * 185.40852 * 21 20 19 24 24 N 1.31563 * 119.99800 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00223 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46788 * 60.00051 * 25 23 21 27 27 H 1.48495 * 109.47468 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46878 * 300.00449 * 25 23 21 29 29 C 1.38612 * 120.01434 * 359.97438 * 19 18 17 30 30 C 1.38591 * 119.99727 * 33.70064 * 5 4 2 31 31 H 1.09004 * 109.46911 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47552 * 300.00260 * 1 2 3 33 33 H 1.09000 * 109.47338 * 60.00340 * 1 2 3 34 34 H 0.96992 * 120.00143 * 5.21789 * 4 2 1 35 35 H 1.08002 * 119.88608 * 0.02562 * 6 5 4 36 36 H 1.07995 * 119.88911 * 180.02562 * 7 6 5 37 37 H 1.08004 * 120.00291 * 180.27611 * 8 7 6 38 38 H 0.96997 * 120.00121 * 359.97438 * 12 10 9 39 39 H 1.07997 * 120.00366 * 359.97438 * 14 13 12 40 40 H 1.08006 * 120.00923 * 359.97410 * 16 15 14 41 41 H 1.08004 * 119.88287 * 180.22904 * 17 16 15 42 42 H 1.08003 * 119.87539 * 179.73548 * 18 17 16 43 43 H 0.97006 * 119.99653 * 180.02562 * 24 23 21 44 44 H 1.08009 * 120.11302 * 179.97438 * 29 19 18 45 45 H 1.08002 * 120.10651 * 0.02562 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5761 -1.1697 0.1107 6 6 4.3232 -2.1415 -0.5445 7 6 5.7013 -2.1488 -0.4386 8 6 6.3453 -1.1874 0.3135 9 6 5.6038 -0.2100 0.9798 10 6 6.2904 0.8175 1.7906 11 8 5.6429 1.6707 2.3659 12 7 7.6343 0.8087 1.8921 13 7 8.2852 1.7830 2.6602 14 6 9.5793 1.7748 2.7575 15 6 10.2645 2.8008 3.5657 16 6 9.5231 3.7864 4.2231 17 6 10.1668 4.7415 4.9827 18 6 11.5454 4.7342 5.0880 19 6 12.2924 3.7620 4.4337 20 8 13.6457 3.7601 4.5403 21 6 14.3180 2.8683 3.7847 22 1 13.7872 2.2582 3.0690 23 6 15.6908 2.7348 3.9265 24 7 16.3373 3.4779 4.7987 25 14 16.6223 1.5000 2.8793 26 1 16.4406 1.8320 1.4433 27 1 18.0666 1.5510 3.2207 28 1 16.1000 0.1348 3.1416 29 6 11.6559 2.7943 3.6722 30 6 4.2127 -0.2033 0.8733 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.6989 -2.0055 -0.0755 35 1 3.8252 -2.8936 -1.1384 36 1 6.2764 -2.9062 -0.9504 37 1 7.4226 -1.1937 0.3902 38 1 8.1509 0.1278 1.4334 39 1 10.1545 1.0167 2.2468 40 1 8.4463 3.7981 4.1396 41 1 9.5921 5.5003 5.4931 42 1 12.0436 5.4872 5.6807 43 1 17.2978 3.3847 4.8977 44 1 12.2349 2.0383 3.1626 45 1 3.6338 0.5522 1.3837 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033692533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:54 Heat of formation + Delta-G solvation = 6.865864 kcal Electronic energy + Delta-G solvation = -29868.935463 eV Core-core repulsion = 25432.723990 eV Total energy + Delta-G solvation = -4436.211472 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.10849 -39.90754 -39.06947 -38.38246 -36.99062 -35.89067 -35.30713 -32.88939 -32.23420 -31.51213 -31.36119 -29.82150 -29.00662 -28.58530 -25.45973 -24.77833 -23.43759 -23.13886 -21.65630 -21.07063 -20.78079 -20.28833 -18.80434 -18.05821 -17.49991 -16.99850 -16.85550 -16.63546 -16.39032 -15.93449 -15.19857 -15.10089 -15.04417 -14.65772 -14.55578 -14.35290 -14.14871 -14.01509 -13.74083 -13.65113 -13.42714 -13.18472 -12.82973 -12.74862 -12.50166 -12.42122 -12.40358 -12.05131 -11.70884 -11.32534 -10.97086 -10.93088 -10.86015 -10.81008 -10.49835 -10.38489 -10.21820 -10.03673 -9.49141 -9.44593 -9.31098 -8.82738 -8.70429 -7.88763 -7.26292 -6.46560 -4.06625 0.35295 0.82550 1.25702 2.03139 2.31042 2.31977 2.52220 2.59852 2.98394 3.10720 3.12895 3.14864 3.53836 3.94002 4.10179 4.24337 4.37498 4.55475 4.57544 4.58590 4.63948 4.80011 4.83766 4.92199 4.97671 5.06727 5.09551 5.22864 5.25136 5.40882 5.66349 5.71356 5.75701 5.79047 5.87193 5.90985 5.94776 6.14928 6.30719 6.43605 6.61178 6.75393 6.79049 6.98607 7.04443 7.16380 7.24644 7.34957 7.54748 7.57212 7.72073 7.96485 8.34466 8.98491 9.67955 10.71304 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.001554 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.617591 B =18015.585158 C =19684.476183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.506 3.494 3 O -0.516 6.516 4 N -0.676 5.676 5 C 0.137 3.863 6 C -0.121 4.121 7 C -0.104 4.104 8 C -0.103 4.103 9 C -0.108 4.108 10 C 0.575 3.425 11 O -0.496 6.496 12 N -0.582 5.582 13 N -0.240 5.240 14 C 0.135 3.865 15 C -0.026 4.026 16 C -0.162 4.162 17 C -0.086 4.086 18 C -0.169 4.169 19 C 0.146 3.854 20 O -0.177 6.177 21 C -0.394 4.394 22 H 0.090 0.910 23 C 0.040 3.960 24 N -0.862 5.862 25 Si 0.940 3.060 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.270 1.270 29 C -0.199 4.199 30 C -0.060 4.060 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.413 0.587 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.381 0.619 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.271 0.729 44 H 0.133 0.867 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.891 -16.077 -12.225 33.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.294 3.706 3 O -0.390 6.390 4 N -0.323 5.323 5 C 0.043 3.957 6 C -0.141 4.141 7 C -0.123 4.123 8 C -0.122 4.122 9 C -0.113 4.113 10 C 0.362 3.638 11 O -0.368 6.368 12 N -0.324 5.324 13 N -0.044 5.044 14 C -0.075 4.075 15 C -0.028 4.028 16 C -0.183 4.183 17 C -0.104 4.104 18 C -0.189 4.189 19 C 0.093 3.907 20 O -0.081 6.081 21 C -0.470 4.470 22 H 0.108 0.892 23 C -0.164 4.164 24 N -0.496 5.496 25 Si 0.764 3.236 26 H -0.195 1.195 27 H -0.203 1.203 28 H -0.196 1.196 29 C -0.220 4.220 30 C -0.081 4.081 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.249 0.751 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.220 0.780 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.080 0.920 44 H 0.150 0.850 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -27.566 -14.162 -11.416 33.027 hybrid contribution 1.235 -2.136 -1.258 2.770 sum -26.331 -16.299 -12.674 33.460 Atomic orbital electron populations 1.21860 0.90347 1.04594 1.06005 1.21132 0.91096 0.83122 0.75211 1.90837 1.70329 1.31065 1.46723 1.43702 1.04883 1.10146 1.73528 1.17594 0.83199 0.97474 0.97386 1.21099 0.94251 0.99569 0.99199 1.20895 0.93740 0.98731 0.98884 1.21334 0.99859 0.94189 0.96825 1.19672 0.93856 0.96925 1.00820 1.17920 0.80190 0.84720 0.80954 1.90817 1.64650 1.36902 1.44447 1.46835 1.07041 1.29210 1.49354 1.75085 1.10974 1.08827 1.09493 1.24681 0.90403 0.96930 0.95513 1.17982 0.92160 0.94504 0.98187 1.20908 0.99437 0.96683 1.01277 1.20658 0.93358 0.98133 0.98269 1.20430 0.93231 1.00378 1.04890 1.19181 0.85249 0.92967 0.93335 1.84027 1.11809 1.53531 1.58735 1.21221 0.90115 1.18122 1.17549 0.89217 1.25267 0.95763 0.98017 0.97362 1.70029 1.09238 1.37499 1.32867 0.85808 0.78548 0.79769 0.79458 1.19518 1.20285 1.19554 1.21196 0.92639 1.02411 1.05804 1.21216 0.93162 0.98149 0.95550 0.90272 0.88043 0.88237 0.75081 0.85045 0.84621 0.85408 0.77999 0.86688 0.86113 0.86464 0.86192 0.91952 0.84979 0.83232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 10.39 36.01 0.37 -0.13 16 2 C 0.51 3.89 7.67 -10.99 -0.08 3.81 16 3 O -0.52 -6.81 14.81 5.55 0.08 -6.73 16 4 N -0.68 -3.87 5.34 -9.89 -0.05 -3.92 16 5 C 0.14 1.15 6.27 -83.74 -0.52 0.63 16 6 C -0.12 -0.72 9.95 -39.31 -0.39 -1.12 16 7 C -0.10 -0.63 10.02 -39.67 -0.40 -1.03 16 8 C -0.10 -0.83 9.54 -39.15 -0.37 -1.20 16 9 C -0.11 -1.25 5.87 -105.00 -0.62 -1.87 16 10 C 0.57 8.74 7.89 -12.35 -0.10 8.64 16 11 O -0.50 -9.70 16.68 5.29 0.09 -9.61 16 12 N -0.58 -8.02 6.21 30.52 0.19 -7.83 16 13 N -0.24 -4.02 10.15 32.16 0.33 -3.70 16 14 C 0.13 2.11 10.75 -14.65 -0.16 1.95 16 15 C -0.03 -0.48 5.87 -105.07 -0.62 -1.09 16 16 C -0.16 -3.01 9.58 -39.11 -0.37 -3.38 16 17 C -0.09 -1.56 10.02 -39.67 -0.40 -1.96 16 18 C -0.17 -3.48 9.98 -39.30 -0.39 -3.88 16 19 C 0.15 3.40 6.64 -39.17 -0.26 3.14 16 20 O -0.18 -4.90 9.76 0.02 0.00 -4.90 16 21 C -0.39 -10.60 9.44 30.89 0.29 -10.31 16 22 H 0.09 2.19 5.29 -52.49 -0.28 1.91 16 23 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 24 N -0.86 -24.75 13.67 55.48 0.76 -23.99 16 25 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 28 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 29 C -0.20 -4.10 8.87 -38.95 -0.35 -4.44 16 30 C -0.06 -0.71 8.20 -38.98 -0.32 -1.03 16 31 H 0.08 0.00 7.92 -51.93 -0.41 -0.41 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.41 0.66 8.66 -40.82 -0.35 0.30 16 35 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 36 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 37 H 0.13 0.73 6.40 -52.48 -0.34 0.40 16 38 H 0.38 3.70 6.68 -182.60 -1.22 2.48 16 39 H 0.12 1.40 8.02 -52.49 -0.42 0.98 16 40 H 0.12 2.20 7.55 -52.48 -0.40 1.81 16 41 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.12 2.36 8.06 -52.48 -0.42 1.93 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.13 2.62 5.71 -52.48 -0.30 2.32 16 45 H 0.15 2.16 6.03 -52.49 -0.32 1.85 16 LS Contribution 399.03 15.07 6.01 6.01 Total: -1.00 -38.18 399.03 -8.10 -46.28 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.70 Total: 5.85 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -4.78 Total: -12.29 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 1.22 Total: -39.44 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.17 Total: -21.24 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.18 -8.10 -46.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033692533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.143 kcal (2) G-P(sol) polarization free energy of solvation -38.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds