Wall clock time and date at job start Tue Mar 31 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 119.99900 * 2 1 4 4 N 1.34775 * 119.99891 * 179.97438 * 2 1 3 5 5 C 1.39961 * 119.99991 * 185.21287 * 4 2 1 6 6 C 1.38987 * 120.00061 * 213.68125 * 5 4 2 7 7 C 1.38220 * 120.23400 * 180.02562 * 6 5 4 8 8 C 1.38015 * 120.21899 * 359.70451 * 7 6 5 9 9 C 1.39606 * 119.99219 * 0.54667 * 8 7 6 10 10 C 1.47807 * 120.11083 * 179.74522 * 9 8 7 11 11 O 1.21587 * 119.99878 * 179.72357 * 10 9 8 12 12 N 1.34771 * 120.00090 * 359.72850 * 10 9 8 13 13 N 1.40106 * 120.00143 * 179.97438 * 12 10 9 14 14 C 1.29776 * 120.00033 * 180.02562 * 13 12 10 15 15 C 1.47487 * 119.99536 * 179.97438 * 14 13 12 16 16 C 1.39759 * 120.12716 * 359.72835 * 15 14 13 17 17 C 1.37975 * 119.97902 * 179.73868 * 16 15 14 18 18 C 1.38257 * 120.23018 * 0.51151 * 17 16 15 19 19 C 1.38977 * 120.25002 * 359.76487 * 18 17 16 20 20 O 1.35756 * 119.99231 * 179.97438 * 19 18 17 21 21 C 1.34833 * 116.99949 * 185.93163 * 20 19 18 22 22 H 1.07995 * 119.99840 * 5.41458 * 21 20 19 23 23 C 1.38653 * 119.99918 * 185.40852 * 21 20 19 24 24 N 1.31563 * 119.99800 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00223 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46788 * 60.00051 * 25 23 21 27 27 H 1.48495 * 109.47468 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46878 * 300.00449 * 25 23 21 29 29 C 1.38612 * 120.01434 * 359.97438 * 19 18 17 30 30 C 1.38591 * 119.99727 * 33.70064 * 5 4 2 31 31 H 1.09004 * 109.46911 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47552 * 300.00260 * 1 2 3 33 33 H 1.09000 * 109.47338 * 60.00340 * 1 2 3 34 34 H 0.96992 * 120.00143 * 5.21789 * 4 2 1 35 35 H 1.08002 * 119.88608 * 0.02562 * 6 5 4 36 36 H 1.07995 * 119.88911 * 180.02562 * 7 6 5 37 37 H 1.08004 * 120.00291 * 180.27611 * 8 7 6 38 38 H 0.96997 * 120.00121 * 359.97438 * 12 10 9 39 39 H 1.07997 * 120.00366 * 359.97438 * 14 13 12 40 40 H 1.08006 * 120.00923 * 359.97410 * 16 15 14 41 41 H 1.08004 * 119.88287 * 180.22904 * 17 16 15 42 42 H 1.08003 * 119.87539 * 179.73548 * 18 17 16 43 43 H 0.97006 * 119.99653 * 180.02562 * 24 23 21 44 44 H 1.08009 * 120.11302 * 179.97438 * 29 19 18 45 45 H 1.08002 * 120.10651 * 0.02562 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5761 -1.1697 0.1107 6 6 4.3232 -2.1415 -0.5445 7 6 5.7013 -2.1488 -0.4386 8 6 6.3453 -1.1874 0.3135 9 6 5.6038 -0.2100 0.9798 10 6 6.2904 0.8175 1.7906 11 8 5.6429 1.6707 2.3659 12 7 7.6343 0.8087 1.8921 13 7 8.2852 1.7830 2.6602 14 6 9.5793 1.7748 2.7575 15 6 10.2645 2.8008 3.5657 16 6 9.5231 3.7864 4.2231 17 6 10.1668 4.7415 4.9827 18 6 11.5454 4.7342 5.0880 19 6 12.2924 3.7620 4.4337 20 8 13.6457 3.7601 4.5403 21 6 14.3180 2.8683 3.7847 22 1 13.7872 2.2582 3.0690 23 6 15.6908 2.7348 3.9265 24 7 16.3373 3.4779 4.7987 25 14 16.6223 1.5000 2.8793 26 1 16.4406 1.8320 1.4433 27 1 18.0666 1.5510 3.2207 28 1 16.1000 0.1348 3.1416 29 6 11.6559 2.7943 3.6722 30 6 4.2127 -0.2033 0.8733 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.6989 -2.0055 -0.0755 35 1 3.8252 -2.8936 -1.1384 36 1 6.2764 -2.9062 -0.9504 37 1 7.4226 -1.1937 0.3902 38 1 8.1509 0.1278 1.4334 39 1 10.1545 1.0167 2.2468 40 1 8.4463 3.7981 4.1396 41 1 9.5921 5.5003 5.4931 42 1 12.0436 5.4872 5.6807 43 1 17.2978 3.3847 4.8977 44 1 12.2349 2.0383 3.1626 45 1 3.6338 0.5522 1.3837 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033692533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:53 Heat of formation + Delta-G solvation = -20.833102 kcal Electronic energy + Delta-G solvation = -29870.136580 eV Core-core repulsion = 25432.723990 eV Total energy + Delta-G solvation = -4437.412590 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79987 -40.92722 -40.72195 -39.20773 -38.55123 -37.34398 -35.97744 -34.38343 -33.90981 -32.33966 -31.95831 -31.16031 -30.31841 -29.40580 -27.33609 -25.88181 -24.38743 -23.99680 -23.29206 -21.91828 -21.74441 -21.50586 -20.02211 -19.55226 -18.51004 -18.19977 -17.96311 -17.41240 -17.23993 -16.75839 -16.59572 -16.37368 -16.28064 -16.02395 -15.68315 -15.52647 -15.47564 -15.23108 -14.98327 -14.58510 -14.38619 -14.19736 -14.14325 -13.78910 -13.50414 -13.41643 -13.10034 -12.94572 -12.91984 -12.72584 -12.53440 -12.43869 -12.40459 -12.11954 -11.65367 -11.43584 -11.39589 -11.15795 -11.03829 -10.84386 -10.58258 -10.09652 -9.39778 -9.29820 -8.97174 -8.42001 -6.10716 -0.45725 -0.09204 0.18783 0.69403 1.23905 1.27177 1.40052 1.48453 1.52651 1.56061 1.88521 2.06041 2.21788 2.76042 2.89198 3.21500 3.27186 3.48894 3.60249 3.72702 3.86932 3.90147 4.00949 4.09682 4.24925 4.30806 4.31791 4.35405 4.42050 4.48898 4.58858 4.61829 4.74369 4.80299 5.03466 5.04597 5.12035 5.13215 5.18365 5.18644 5.25623 5.33916 5.58138 5.63988 5.64696 5.83448 5.94480 6.04269 6.11251 6.35195 6.38226 7.02366 7.09160 7.22389 7.81410 8.80740 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.001554 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.617591 B =18015.585158 C =19684.476183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.498 3.502 3 O -0.582 6.582 4 N -0.660 5.660 5 C 0.127 3.873 6 C -0.100 4.100 7 C -0.095 4.095 8 C -0.097 4.097 9 C -0.133 4.133 10 C 0.571 3.429 11 O -0.556 6.556 12 N -0.568 5.568 13 N -0.270 5.270 14 C 0.138 3.862 15 C -0.023 4.023 16 C -0.158 4.158 17 C -0.075 4.075 18 C -0.180 4.180 19 C 0.112 3.888 20 O -0.228 6.228 21 C -0.413 4.413 22 H 0.108 0.892 23 C -0.023 4.023 24 N -0.921 5.921 25 Si 1.017 2.983 26 H -0.257 1.257 27 H -0.277 1.277 28 H -0.254 1.254 29 C -0.196 4.196 30 C -0.089 4.089 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.435 0.565 35 H 0.175 0.825 36 H 0.178 0.822 37 H 0.153 0.847 38 H 0.404 0.596 39 H 0.155 0.845 40 H 0.127 0.873 41 H 0.152 0.848 42 H 0.122 0.878 43 H 0.271 0.729 44 H 0.139 0.861 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.720 -20.447 -15.254 38.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.289 3.711 3 O -0.461 6.461 4 N -0.308 5.308 5 C 0.032 3.968 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.116 4.116 9 C -0.138 4.138 10 C 0.361 3.639 11 O -0.432 6.432 12 N -0.312 5.312 13 N -0.074 5.074 14 C -0.072 4.072 15 C -0.026 4.026 16 C -0.179 4.179 17 C -0.093 4.093 18 C -0.200 4.200 19 C 0.062 3.938 20 O -0.135 6.135 21 C -0.489 4.489 22 H 0.125 0.875 23 C -0.220 4.220 24 N -0.559 5.559 25 Si 0.836 3.164 26 H -0.181 1.181 27 H -0.202 1.202 28 H -0.178 1.178 29 C -0.218 4.218 30 C -0.110 4.110 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.276 0.724 35 H 0.192 0.808 36 H 0.195 0.805 37 H 0.170 0.830 38 H 0.247 0.753 39 H 0.172 0.828 40 H 0.145 0.855 41 H 0.170 0.830 42 H 0.140 0.860 43 H 0.080 0.920 44 H 0.157 0.843 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -29.453 -18.607 -14.466 37.723 hybrid contribution 1.437 -0.805 -0.349 1.684 sum -28.016 -19.412 -14.815 37.165 Atomic orbital electron populations 1.21903 0.86561 1.07251 1.06188 1.22051 0.92931 0.82552 0.73607 1.90817 1.71921 1.33490 1.49827 1.43635 1.04122 1.10789 1.72251 1.17773 0.84522 0.97297 0.97200 1.21608 0.94410 0.98607 0.97388 1.21423 0.94048 0.98361 0.97483 1.21637 1.00972 0.93177 0.95816 1.19477 0.93814 0.97829 1.02664 1.18677 0.80264 0.84658 0.80299 1.90775 1.65855 1.39461 1.47126 1.46626 1.06805 1.28990 1.48753 1.74963 1.11811 1.10408 1.10215 1.24619 0.90392 0.96924 0.95234 1.18178 0.91472 0.95041 0.97883 1.21191 0.99851 0.96400 1.00452 1.20996 0.92372 0.98463 0.97462 1.20655 0.94251 1.00152 1.04961 1.19683 0.84424 0.94719 0.94970 1.83996 1.13838 1.55151 1.60518 1.21809 0.90847 1.18149 1.18085 0.87475 1.26579 0.96555 1.00117 0.98756 1.70191 1.09548 1.40382 1.35771 0.84667 0.76612 0.77324 0.77775 1.18101 1.20220 1.17772 1.21242 0.93481 1.01872 1.05194 1.21055 0.93458 0.99042 0.97475 0.86376 0.88156 0.87574 0.72420 0.80792 0.80494 0.82976 0.75330 0.82819 0.85479 0.82991 0.86043 0.91967 0.84310 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 10.39 71.24 0.74 0.02 16 2 C 0.50 7.65 7.67 87.66 0.67 8.32 16 3 O -0.58 -16.68 14.81 -3.05 -0.05 -16.73 16 4 N -0.66 -6.47 5.34 -303.60 -1.62 -8.09 16 5 C 0.13 1.94 6.27 38.11 0.24 2.18 16 6 C -0.10 -0.76 9.95 22.45 0.22 -0.53 16 7 C -0.10 -0.69 10.02 22.21 0.22 -0.46 16 8 C -0.10 -1.26 9.54 22.55 0.22 -1.05 16 9 C -0.13 -3.09 5.87 -20.11 -0.12 -3.21 16 10 C 0.57 17.85 7.89 86.78 0.68 18.54 16 11 O -0.56 -23.28 16.68 -3.99 -0.07 -23.35 16 12 N -0.57 -15.06 6.21 -175.61 -1.09 -16.15 16 13 N -0.27 -8.79 10.15 -52.15 -0.53 -9.32 16 14 C 0.14 4.05 10.75 87.44 0.94 4.99 16 15 C -0.02 -0.84 5.87 -20.15 -0.12 -0.96 16 16 C -0.16 -5.71 9.58 22.58 0.22 -5.50 16 17 C -0.08 -2.66 10.02 22.21 0.22 -2.43 16 18 C -0.18 -7.56 9.98 22.45 0.22 -7.33 16 19 C 0.11 5.39 6.64 22.54 0.15 5.54 16 20 O -0.23 -13.24 9.76 -22.84 -0.22 -13.46 16 21 C -0.41 -22.86 9.44 67.92 0.64 -22.22 16 22 H 0.11 5.25 5.29 -2.91 -0.02 5.24 16 23 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 24 N -0.92 -55.25 13.67 21.61 0.30 -54.96 16 25 Si 1.02 40.81 29.55 68.60 2.03 42.83 16 26 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 27 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 29 C -0.20 -8.07 8.87 22.68 0.20 -7.87 16 30 C -0.09 -2.21 8.20 22.66 0.19 -2.02 16 31 H 0.12 -0.42 7.92 -2.39 -0.02 -0.44 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.43 -0.07 8.66 -92.71 -0.80 -0.87 16 35 H 0.17 -0.13 8.06 -2.91 -0.02 -0.15 16 36 H 0.18 -0.07 8.06 -2.91 -0.02 -0.09 16 37 H 0.15 1.12 6.40 -2.91 -0.02 1.10 16 38 H 0.40 6.82 6.68 -213.32 -1.42 5.40 16 39 H 0.15 3.22 8.02 -2.91 -0.02 3.20 16 40 H 0.13 4.51 7.55 -2.91 -0.02 4.49 16 41 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 42 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 43 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 44 H 0.14 5.42 5.71 -2.91 -0.02 5.40 16 45 H 0.11 3.57 6.03 -2.91 -0.02 3.55 16 Total: -1.00 -94.26 399.03 3.61 -90.65 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -1.14 Total: 23.32 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 6.01 Total: -14.75 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -2.95 Total: -88.51 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.33 Total: -53.54 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -94.26 3.61 -90.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033692533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.818 kcal (2) G-P(sol) polarization free energy of solvation -94.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds