Wall clock time and date at job start Tue Mar 31 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99978 * 2 1 4 4 C 1.50696 * 109.47119 * 274.75392 * 3 2 1 5 5 H 1.08003 * 120.00210 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00364 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99755 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00293 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46800 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.46978 * 120.00044 * 8 6 4 11 11 H 1.48499 * 109.47137 * 239.99933 * 8 6 4 12 12 S 1.65603 * 120.00099 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.39936 * 150.05947 * 12 2 1 14 14 O 1.42103 * 106.39922 * 17.14653 * 12 2 1 15 15 C 1.76191 * 107.22043 * 263.60496 * 12 2 1 16 16 C 1.38248 * 119.99616 * 246.82150 * 15 12 2 17 17 C 1.38204 * 120.02406 * 180.25574 * 16 15 12 18 18 C 1.38354 * 120.01353 * 359.76669 * 17 16 15 19 19 Br 1.89102 * 120.00335 * 180.02562 * 18 17 16 20 20 C 1.38281 * 119.99544 * 359.97438 * 18 17 16 21 21 C 1.38338 * 120.00017 * 66.56526 * 15 12 2 22 22 Cl 1.73602 * 120.00561 * 359.97438 * 21 15 12 23 23 H 1.09004 * 109.46756 * 270.00251 * 1 2 3 24 24 H 1.08992 * 109.46801 * 30.00066 * 1 2 3 25 25 H 1.09004 * 109.46797 * 150.00349 * 1 2 3 26 26 H 1.09005 * 109.47257 * 34.75446 * 3 2 1 27 27 H 1.09000 * 109.47039 * 154.75019 * 3 2 1 28 28 H 0.97001 * 120.00114 * 180.02562 * 7 6 4 29 29 H 1.07999 * 119.98995 * 359.97438 * 16 15 12 30 30 H 1.07995 * 119.99383 * 179.74149 * 17 16 15 31 31 H 1.08004 * 120.00931 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3467 1.7626 -1.4159 5 1 1.9365 1.1890 -2.2340 6 6 3.0059 2.9473 -1.6670 7 7 3.5050 3.6460 -0.6708 8 14 3.1902 3.5598 -3.4221 9 1 2.5464 2.5978 -4.3522 10 1 2.5391 4.8879 -3.5537 11 1 4.6323 3.6804 -3.7554 12 16 2.2931 -1.4341 0.0006 13 8 3.5167 -1.1912 -0.6798 14 8 1.3656 -2.4331 -0.4008 15 6 2.7162 -1.7914 1.6733 16 6 4.0411 -1.7823 2.0681 17 6 4.3741 -2.0676 3.3787 18 6 3.3812 -2.3578 4.2975 19 35 3.8371 -2.7475 6.0910 20 6 2.0554 -2.3618 3.9046 21 6 1.7224 -2.0757 2.5926 22 17 0.0582 -2.0800 2.0985 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8901 -0.5138 26 1 1.6480 2.0056 0.5859 27 1 3.1841 1.1186 0.4384 28 1 3.9685 4.4796 -0.8474 29 1 4.8165 -1.5566 1.3511 30 1 5.4095 -2.0645 3.6856 31 1 1.2802 -2.5879 4.6218 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034936897.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:32 Heat of formation + Delta-G solvation = -38.926601 kcal Electronic energy + Delta-G solvation = -20902.067438 eV Core-core repulsion = 17383.370801 eV Total energy + Delta-G solvation = -3518.696637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 366.943 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.56579 -37.03422 -36.52295 -35.57905 -35.29215 -32.84610 -32.47190 -31.24297 -29.76591 -27.83042 -25.14086 -23.36143 -23.13461 -22.29122 -18.95300 -17.80156 -16.87033 -16.59989 -16.28053 -16.06963 -15.22792 -14.96660 -14.41454 -14.22694 -14.21072 -13.47342 -13.43336 -12.66086 -12.44274 -12.31552 -12.09344 -11.99898 -11.83590 -11.53895 -11.32311 -11.17026 -11.10438 -10.97211 -10.74372 -10.72633 -10.56737 -10.49903 -10.05237 -9.76408 -9.39165 -9.12419 -8.48173 -8.11480 -6.09612 -4.13606 0.22670 0.79374 0.84719 1.04692 1.79259 2.91168 3.30022 3.37802 3.42911 3.56252 4.15563 4.27243 4.42821 4.56869 4.73434 5.03817 5.12571 5.25492 5.35276 5.40877 5.61876 5.67251 5.72038 6.00927 6.23353 6.26309 6.50886 7.14122 7.30597 7.51013 7.88081 8.15029 8.89429 9.51900 10.99065 Molecular weight = 366.94amu Principal moments of inertia in cm(-1) A = 0.015785 B = 0.003439 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.375936 B = 8139.515374 C = 9024.420061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.977 5.977 3 C 0.255 3.745 4 C -0.527 4.527 5 H 0.063 0.937 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.679 3.321 13 O -0.934 6.934 14 O -0.959 6.959 15 C -0.656 4.656 16 C 0.000 4.000 17 C -0.109 4.109 18 C -0.038 4.038 19 Br -0.033 7.033 20 C -0.107 4.107 21 C 0.058 3.942 22 Cl -0.029 7.029 23 H 0.043 0.957 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.263 0.737 29 H 0.164 0.836 30 H 0.148 0.852 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -12.720 14.582 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.818 5.818 3 C 0.133 3.867 4 C -0.566 4.566 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.763 3.237 13 O -0.924 6.924 14 O -0.949 6.949 15 C -0.738 4.738 16 C -0.020 4.020 17 C -0.129 4.129 18 C -0.118 4.118 19 Br 0.053 6.947 20 C -0.128 4.128 21 C 0.029 3.971 22 Cl 0.001 6.999 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.182 0.818 30 H 0.166 0.834 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.272 -13.213 14.609 19.739 hybrid contribution -0.020 0.718 -0.384 0.815 sum -1.292 -12.495 14.225 18.977 Atomic orbital electron populations 1.21587 0.79512 1.03613 1.00784 1.57257 1.14401 1.22247 1.87917 1.19150 0.90917 0.78580 0.98049 1.21509 1.36118 1.06285 0.92700 0.91838 1.24928 0.95083 0.96442 0.97526 1.69928 1.37453 1.15265 1.30893 0.86448 0.78025 0.78516 0.84526 1.19545 1.20978 1.20788 1.02672 0.74039 0.73379 0.73568 1.93613 1.45124 1.84777 1.68909 1.93554 1.63096 1.58114 1.80100 1.31764 0.99836 1.14092 1.28086 1.21118 0.94385 0.90345 0.96167 1.21375 0.99638 0.99266 0.92668 1.21964 0.95410 1.02303 0.92134 1.96780 1.93488 1.93246 1.11152 1.21035 0.95502 1.01364 0.94929 1.20376 0.86329 0.97062 0.93342 1.98450 1.14844 1.95996 1.90619 0.93812 0.90039 0.91234 0.94303 0.94603 0.92698 0.81846 0.83381 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 9.03 59.85 0.54 2.09 16 2 N -0.98 -19.85 3.16 -123.05 -0.39 -20.24 16 3 C 0.25 6.17 5.07 -5.20 -0.03 6.14 16 4 C -0.53 -14.34 9.38 -34.44 -0.32 -14.66 16 5 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 S 2.68 52.26 5.05 -107.50 -0.54 51.71 16 13 O -0.93 -20.99 16.18 -57.17 -0.93 -21.91 16 14 O -0.96 -18.98 14.88 -57.17 -0.85 -19.83 16 15 C -0.66 -10.61 5.92 -39.54 -0.23 -10.84 16 16 C 0.00 0.00 9.55 -39.59 -0.38 -0.38 16 17 C -0.11 -1.29 9.79 -39.55 -0.39 -1.68 16 18 C -0.04 -0.44 6.22 -39.52 -0.25 -0.69 16 19 Br -0.03 -0.31 33.70 -68.01 -2.29 -2.60 16 20 C -0.11 -1.31 9.57 -39.52 -0.38 -1.69 16 21 C 0.06 0.84 6.30 -39.50 -0.25 0.59 16 22 Cl -0.03 -0.40 23.10 -51.86 -1.20 -1.60 16 23 H 0.04 0.65 6.28 -51.93 -0.33 0.32 16 24 H 0.08 1.38 8.07 -51.93 -0.42 0.97 16 25 H 0.07 1.12 7.00 -51.93 -0.36 0.76 16 26 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 27 H 0.04 0.91 7.79 -51.93 -0.40 0.50 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.16 2.22 7.33 -52.49 -0.38 1.83 16 30 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -30.94 313.34 -10.25 -41.19 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -2.71 Total: -3.54 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -1.78 Total: -19.48 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.35 Total: -45.00 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.78 Total: -41.75 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 52.26 SS G_CDS: -0.54 Total: 51.71 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.20 Total: -1.60 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.29 Total: -2.60 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.94 -10.25 -41.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034936897.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.265 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds