Wall clock time and date at job start Tue Mar 31 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99978 * 2 1 4 4 C 1.50696 * 109.47119 * 274.75392 * 3 2 1 5 5 H 1.08003 * 120.00210 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00364 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99755 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00293 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46800 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.46978 * 120.00044 * 8 6 4 11 11 H 1.48499 * 109.47137 * 239.99933 * 8 6 4 12 12 S 1.65603 * 120.00099 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.39936 * 150.05947 * 12 2 1 14 14 O 1.42103 * 106.39922 * 17.14653 * 12 2 1 15 15 C 1.76191 * 107.22043 * 263.60496 * 12 2 1 16 16 C 1.38248 * 119.99616 * 246.82150 * 15 12 2 17 17 C 1.38204 * 120.02406 * 180.25574 * 16 15 12 18 18 C 1.38354 * 120.01353 * 359.76669 * 17 16 15 19 19 Br 1.89102 * 120.00335 * 180.02562 * 18 17 16 20 20 C 1.38281 * 119.99544 * 359.97438 * 18 17 16 21 21 C 1.38338 * 120.00017 * 66.56526 * 15 12 2 22 22 Cl 1.73602 * 120.00561 * 359.97438 * 21 15 12 23 23 H 1.09004 * 109.46756 * 270.00251 * 1 2 3 24 24 H 1.08992 * 109.46801 * 30.00066 * 1 2 3 25 25 H 1.09004 * 109.46797 * 150.00349 * 1 2 3 26 26 H 1.09005 * 109.47257 * 34.75446 * 3 2 1 27 27 H 1.09000 * 109.47039 * 154.75019 * 3 2 1 28 28 H 0.97001 * 120.00114 * 180.02562 * 7 6 4 29 29 H 1.07999 * 119.98995 * 359.97438 * 16 15 12 30 30 H 1.07995 * 119.99383 * 179.74149 * 17 16 15 31 31 H 1.08004 * 120.00931 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3467 1.7626 -1.4159 5 1 1.9365 1.1890 -2.2340 6 6 3.0059 2.9473 -1.6670 7 7 3.5050 3.6460 -0.6708 8 14 3.1902 3.5598 -3.4221 9 1 2.5464 2.5978 -4.3522 10 1 2.5391 4.8879 -3.5537 11 1 4.6323 3.6804 -3.7554 12 16 2.2931 -1.4341 0.0006 13 8 3.5167 -1.1912 -0.6798 14 8 1.3656 -2.4331 -0.4008 15 6 2.7162 -1.7914 1.6733 16 6 4.0411 -1.7823 2.0681 17 6 4.3741 -2.0676 3.3787 18 6 3.3812 -2.3578 4.2975 19 35 3.8371 -2.7475 6.0910 20 6 2.0554 -2.3618 3.9046 21 6 1.7224 -2.0757 2.5926 22 17 0.0582 -2.0800 2.0985 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8901 -0.5138 26 1 1.6480 2.0056 0.5859 27 1 3.1841 1.1186 0.4384 28 1 3.9685 4.4796 -0.8474 29 1 4.8165 -1.5566 1.3511 30 1 5.4095 -2.0645 3.6856 31 1 1.2802 -2.5879 4.6218 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034936897.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:31 Heat of formation + Delta-G solvation = -58.484268 kcal Electronic energy + Delta-G solvation = -20902.915522 eV Core-core repulsion = 17383.370801 eV Total energy + Delta-G solvation = -3519.544721 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 366.943 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61162 -38.44510 -37.82000 -37.25977 -36.91096 -34.49923 -33.84513 -32.26979 -30.74741 -29.68658 -26.83595 -24.54050 -24.22574 -24.06226 -20.28884 -19.29491 -18.51073 -18.38081 -17.55878 -17.33740 -16.83465 -16.20279 -16.04177 -15.41568 -15.23618 -15.10637 -14.89095 -14.17059 -13.98401 -13.76013 -13.45867 -13.26680 -13.15913 -13.04244 -12.96653 -12.86118 -12.57057 -12.45123 -12.35624 -12.14983 -11.91807 -11.76428 -11.66797 -11.53846 -10.58045 -10.38494 -10.19114 -9.78046 -8.18716 -6.29854 -0.91299 -0.61144 -0.22642 0.11032 0.71120 1.41374 1.43969 1.55481 1.78484 2.10583 2.43378 2.68231 3.10559 3.14266 3.49758 3.72465 3.89199 3.98136 4.07826 4.30138 4.40823 4.62872 4.67690 4.71440 4.79117 5.04335 5.18848 5.21952 5.44148 5.68864 5.87083 6.10657 6.78216 7.39010 8.89275 Molecular weight = 366.94amu Principal moments of inertia in cm(-1) A = 0.015785 B = 0.003439 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.375936 B = 8139.515374 C = 9024.420061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.986 5.986 3 C 0.269 3.731 4 C -0.545 4.545 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.924 5.924 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.272 1.272 11 H -0.279 1.279 12 S 2.687 3.313 13 O -0.975 6.975 14 O -0.968 6.968 15 C -0.670 4.670 16 C -0.014 4.014 17 C -0.100 4.100 18 C -0.037 4.037 19 Br -0.003 7.003 20 C -0.100 4.100 21 C 0.046 3.954 22 Cl -0.029 7.029 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.031 0.969 27 H 0.020 0.980 28 H 0.267 0.733 29 H 0.163 0.837 30 H 0.179 0.821 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 -13.320 16.090 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.826 5.826 3 C 0.146 3.854 4 C -0.584 4.584 5 H 0.073 0.927 6 C -0.185 4.185 7 N -0.564 5.564 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.197 1.197 11 H -0.205 1.205 12 S 2.776 3.224 13 O -0.965 6.965 14 O -0.958 6.958 15 C -0.757 4.757 16 C -0.034 4.034 17 C -0.121 4.121 18 C -0.117 4.117 19 Br 0.083 6.917 20 C -0.121 4.121 21 C 0.017 3.983 22 Cl 0.000 7.000 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.180 0.820 30 H 0.196 0.804 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.306 -13.809 16.070 21.228 hybrid contribution 0.005 0.803 -0.664 1.042 sum -1.302 -13.006 15.406 20.204 Atomic orbital electron populations 1.21773 0.77841 1.03888 1.02435 1.57130 1.15552 1.21138 1.88774 1.18723 0.90466 0.79908 0.96299 1.21830 1.36153 1.06554 0.93911 0.92699 1.25692 0.94814 0.96681 1.01270 1.70009 1.38037 1.15712 1.32652 0.85555 0.78052 0.78355 0.80060 1.19385 1.19690 1.20460 1.01964 0.73089 0.72845 0.74470 1.93557 1.46520 1.85195 1.71245 1.93532 1.63190 1.57851 1.81241 1.31133 1.01347 1.17171 1.26055 1.21258 0.93639 0.90927 0.97559 1.21680 1.01315 0.97631 0.91425 1.22230 0.95182 1.00763 0.93542 1.96828 1.93290 1.92915 1.08651 1.21338 0.96564 0.99994 0.94243 1.20495 0.85965 0.97754 0.94067 1.98442 1.14729 1.96024 1.90775 0.91488 0.90343 0.90379 0.95053 0.96208 0.92360 0.81996 0.80390 0.80657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.92 9.03 127.77 1.15 4.08 16 2 N -0.99 -40.78 3.16 -543.22 -1.72 -42.50 16 3 C 0.27 13.38 5.07 85.63 0.43 13.82 16 4 C -0.55 -30.27 9.38 25.60 0.24 -30.03 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.83 5.46 84.66 0.46 1.29 16 7 N -0.92 -53.08 13.29 21.45 0.28 -52.80 16 8 Si 0.95 43.91 29.54 68.60 2.03 45.93 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 S 2.69 106.90 5.05 -56.49 -0.29 106.62 16 13 O -0.97 -45.42 16.18 -128.00 -2.07 -47.50 16 14 O -0.97 -38.69 14.88 -128.00 -1.91 -40.59 16 15 C -0.67 -21.51 5.92 22.30 0.13 -21.37 16 16 C -0.01 -0.38 9.55 22.26 0.21 -0.17 16 17 C -0.10 -2.15 9.79 22.29 0.22 -1.93 16 18 C -0.04 -0.75 6.22 22.31 0.14 -0.61 16 19 Br 0.00 -0.05 33.70 -20.37 -0.69 -0.73 16 20 C -0.10 -2.20 9.57 22.31 0.21 -1.99 16 21 C 0.05 1.29 6.30 22.32 0.14 1.43 16 22 Cl -0.03 -0.79 23.10 -2.72 -0.06 -0.85 16 23 H 0.07 1.94 6.28 -2.39 -0.01 1.93 16 24 H 0.08 2.69 8.07 -2.39 -0.02 2.67 16 25 H 0.08 2.51 7.00 -2.38 -0.02 2.49 16 26 H 0.03 1.59 8.11 -2.38 -0.02 1.57 16 27 H 0.02 1.04 7.79 -2.39 -0.02 1.03 16 28 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.16 4.48 7.33 -2.91 -0.02 4.46 16 30 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -66.31 313.34 0.10 -66.21 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: 1.17 Total: 1.70 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 3.35 Total: -35.49 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -1.43 Total: -95.29 kcal Atomic # 8 Polarization: -84.11 SS G_CDS: -3.98 Total: -88.09 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 106.90 SS G_CDS: -0.29 Total: 106.62 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.06 Total: -0.85 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.69 Total: -0.73 kcal Total: -66.31 0.10 -66.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034936897.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.724 kcal (2) G-P(sol) polarization free energy of solvation -66.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds