Wall clock time and date at job start Tue Mar 31 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99718 * 2 1 4 4 H 1.48511 * 109.46948 * 269.99774 * 3 2 1 5 5 H 1.48498 * 109.47773 * 29.99492 * 3 2 1 6 6 H 1.48500 * 109.47451 * 150.00186 * 3 2 1 7 7 C 1.37877 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99992 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99875 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.46744 * 180.02562 * 9 7 2 11 11 C 1.35606 * 124.77730 * 264.97012 * 10 9 7 12 12 C 1.36663 * 109.69614 * 180.02562 * 11 10 9 13 13 C 1.46374 * 126.79010 * 180.02562 * 12 11 10 14 14 C 1.35454 * 119.99880 * 0.02715 * 13 12 11 15 15 C 1.41494 * 120.00017 * 179.97438 * 14 13 12 16 16 O 1.21783 * 120.00182 * 359.97438 * 15 14 13 17 17 N 1.34786 * 119.99826 * 180.27130 * 15 14 13 18 18 C 1.47418 * 125.64551 * 359.75401 * 17 15 14 19 19 C 1.54911 * 104.83118 * 204.08766 * 18 17 15 20 20 C 1.55161 * 101.58148 * 322.99300 * 19 18 17 21 21 H 1.08998 * 110.71579 * 277.13734 * 20 19 18 22 22 C 1.50704 * 110.72170 * 154.04095 * 20 19 18 23 23 N 1.34771 * 119.99847 * 180.02562 * 22 20 19 24 24 O 1.21279 * 120.00007 * 359.97438 * 22 20 19 25 25 C 1.47019 * 125.64389 * 179.44142 * 17 15 14 26 26 C 1.47520 * 106.42691 * 0.26434 * 12 11 10 27 27 C 1.39258 * 133.96651 * 180.54369 * 26 12 11 28 28 C 1.37765 * 119.67551 * 179.58541 * 27 26 12 29 29 C 1.38744 * 120.29932 * 359.64783 * 28 27 26 30 30 C 1.37774 * 120.62806 * 0.02562 * 29 28 27 31 31 C 1.37987 * 124.78168 * 85.00211 * 10 9 7 32 32 H 0.96993 * 120.00241 * 0.02562 * 1 2 3 33 33 H 1.08990 * 109.46988 * 60.00355 * 9 7 2 34 34 H 1.08997 * 109.47099 * 299.99803 * 9 7 2 35 35 H 1.07999 * 125.15821 * 0.02969 * 11 10 9 36 36 H 1.08001 * 120.00491 * 180.02562 * 13 12 11 37 37 H 1.08002 * 120.00155 * 359.97438 * 14 13 12 38 38 H 1.08998 * 110.36824 * 322.92641 * 18 17 15 39 39 H 1.08998 * 110.36917 * 85.14521 * 18 17 15 40 40 H 1.09000 * 111.00416 * 81.06067 * 19 18 17 41 41 H 1.08997 * 111.00782 * 204.87887 * 19 18 17 42 42 H 0.97001 * 120.00142 * 359.97438 * 23 22 20 43 43 H 0.96995 * 119.99828 * 180.02562 * 23 22 20 44 44 H 1.09000 * 109.88823 * 298.39415 * 25 17 15 45 45 H 1.08993 * 109.88705 * 59.56726 * 25 17 15 46 46 H 1.08004 * 120.15835 * 359.23240 * 27 26 12 47 47 H 1.08005 * 119.85449 * 179.67286 * 28 27 26 48 48 H 1.08005 * 119.68520 * 180.02562 * 29 28 27 49 49 H 1.08008 * 120.02996 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.3493 -3.2722 1.1105 12 6 4.7604 -4.5264 0.7561 13 6 5.2183 -5.5859 1.6564 14 6 5.2633 -5.3669 2.9923 15 6 5.7053 -6.3912 3.8627 16 8 6.0449 -7.4699 3.4107 17 7 5.7450 -6.1751 5.1925 18 6 5.3632 -4.9234 5.8712 19 6 6.1384 -4.9471 7.2122 20 6 6.0779 -6.4532 7.5804 21 1 5.1333 -6.6932 8.0683 22 6 7.2416 -6.8345 8.4588 23 7 7.3726 -8.1047 8.8899 24 8 8.0606 -5.9986 8.7771 25 6 6.1699 -7.1509 6.2068 26 6 4.6571 -4.5996 -0.7136 27 6 4.9155 -5.5950 -1.6526 28 6 4.7033 -5.3425 -2.9902 29 6 4.2275 -4.1060 -3.4023 30 6 3.9613 -3.1146 -2.4834 31 6 4.1696 -3.3500 -1.1281 32 1 -0.4850 0.8400 -0.0004 33 1 3.8745 -0.6800 0.8911 34 1 3.8752 -0.6804 -0.8888 35 1 4.3089 -2.8936 2.1212 36 1 5.5201 -6.5422 1.2555 37 1 4.9618 -4.4105 3.3933 38 1 5.6632 -4.0618 5.2748 39 1 4.2887 -4.9027 6.0527 40 1 7.1689 -4.6200 7.0736 41 1 5.6358 -4.3398 7.9649 42 1 6.7177 -8.7734 8.6351 43 1 8.1213 -8.3500 9.4556 44 1 5.5112 -8.0191 6.1850 45 1 7.1983 -7.4584 6.0175 46 1 5.2860 -6.5582 -1.3342 47 1 4.9077 -6.1107 -3.7214 48 1 4.0642 -3.9190 -4.4534 49 1 3.5916 -2.1555 -2.8149 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041128813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:22 Heat of formation + Delta-G solvation = 3.193372 kcal Electronic energy + Delta-G solvation = -31402.775768 eV Core-core repulsion = 27102.238140 eV Total energy + Delta-G solvation = -4300.537629 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.95375 -40.67406 -39.43443 -37.21180 -36.71859 -34.41246 -34.14413 -33.00702 -32.04374 -31.10643 -29.97128 -29.47276 -28.46849 -27.30266 -25.18099 -23.27965 -22.80713 -22.70467 -21.77765 -20.69914 -20.33214 -19.50007 -18.25634 -18.01548 -17.41851 -17.28110 -17.18331 -16.37263 -16.08678 -15.89032 -15.29040 -15.15818 -14.95879 -14.66991 -14.36618 -13.97380 -13.93530 -13.66598 -13.51818 -13.44486 -13.16232 -13.08477 -12.67123 -12.65435 -12.42417 -12.04707 -12.03583 -11.78075 -11.72008 -11.47499 -11.26998 -11.13425 -11.05516 -10.87917 -10.57806 -10.42758 -10.40991 -10.14473 -10.00109 -9.82232 -9.63374 -8.93927 -8.86374 -8.66364 -7.79858 -6.93211 -6.41095 -4.46919 1.00884 1.67078 2.10728 2.15178 2.85965 3.03133 3.09113 3.10549 3.12546 3.16912 3.46324 3.77736 3.94015 4.07490 4.18288 4.34051 4.44620 4.77485 4.86183 4.87374 4.94042 4.98568 5.04551 5.10818 5.28654 5.32350 5.38127 5.42983 5.45968 5.51602 5.57524 5.62534 5.76085 5.85820 5.95044 6.01053 6.10391 6.13442 6.23342 6.27779 6.31715 6.33470 6.58928 6.70160 6.84752 6.88958 6.96191 7.10135 7.10899 7.22428 7.47496 7.68485 7.71126 7.80379 8.13464 8.29254 8.63133 9.13321 10.70871 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.009251 B = 0.002173 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.097309 B =12885.112097 C =15362.479001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.081 3.919 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.203 3.797 10 N -0.433 5.433 11 C 0.131 3.869 12 C -0.220 4.220 13 C 0.085 3.915 14 C -0.293 4.293 15 C 0.580 3.420 16 O -0.561 6.561 17 N -0.623 5.623 18 C 0.099 3.901 19 C -0.114 4.114 20 C -0.129 4.129 21 H 0.113 0.887 22 C 0.530 3.470 23 N -0.854 5.854 24 O -0.537 6.537 25 C 0.124 3.876 26 C -0.084 4.084 27 C -0.087 4.087 28 C -0.144 4.144 29 C -0.117 4.117 30 C -0.103 4.103 31 C 0.097 3.903 32 H 0.270 0.730 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.170 0.830 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.403 0.597 43 H 0.402 0.598 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.120 0.880 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.081 -12.194 11.299 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.124 4.124 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.101 0.899 9 C 0.083 3.917 10 N -0.107 5.107 11 C -0.006 4.006 12 C -0.228 4.228 13 C 0.064 3.936 14 C -0.315 4.315 15 C 0.377 3.623 16 O -0.443 6.443 17 N -0.358 5.358 18 C -0.024 4.024 19 C -0.152 4.152 20 C -0.150 4.150 21 H 0.131 0.869 22 C 0.314 3.686 23 N -0.418 5.418 24 O -0.413 6.413 25 C 0.000 4.000 26 C -0.087 4.087 27 C -0.105 4.105 28 C -0.163 4.163 29 C -0.136 4.136 30 C -0.123 4.123 31 C -0.008 4.008 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.187 0.813 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.232 0.768 43 H 0.233 0.767 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.138 0.862 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.363 -11.574 11.039 19.620 hybrid contribution -0.001 0.619 0.313 0.694 sum 11.362 -10.955 11.353 19.442 Atomic orbital electron populations 1.69866 1.06197 1.27604 1.48051 1.24832 0.94825 0.98900 0.93845 0.86905 0.80308 0.83738 0.79162 1.19605 1.20406 1.18903 1.21158 0.87843 0.95645 1.54184 0.89932 1.20204 0.97101 0.75464 0.98907 1.44302 1.48915 1.13559 1.03933 1.22217 0.95210 0.91141 0.91985 1.18853 1.17688 0.94952 0.91283 1.21607 0.84855 0.95661 0.91473 1.21368 1.15512 1.00594 0.94007 1.16730 0.77419 0.88086 0.80094 1.90803 1.50818 1.27055 1.75594 1.48296 1.67477 1.14599 1.05471 1.22407 0.99437 0.87585 0.92978 1.22728 1.02837 0.93206 0.96450 1.22447 0.98336 0.98888 0.95371 0.86923 1.20286 0.86290 0.82235 0.79766 1.43892 1.31792 1.10987 1.55114 1.90766 1.43351 1.49674 1.57463 1.21638 1.00997 0.92196 0.85156 1.18999 1.03594 0.93807 0.92346 1.20333 1.00508 0.97661 0.92010 1.20800 1.03027 0.97223 0.95247 1.20713 1.01041 0.93246 0.98646 1.20192 1.02134 1.00426 0.89564 1.18253 1.02662 0.91069 0.88829 0.91945 0.93359 0.94099 0.81265 0.85396 0.86128 0.89624 0.90794 0.89032 0.89126 0.76834 0.76690 0.90740 0.91314 0.86456 0.86481 0.86182 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.92 13.96 55.43 0.77 -24.14 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 18.96 27.47 -169.99 -4.67 14.29 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16 7 C -0.55 -14.18 9.94 -34.44 -0.34 -14.53 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 9 C 0.20 4.31 4.77 -5.19 -0.02 4.29 16 10 N -0.43 -8.56 2.73 -115.38 -0.31 -8.88 16 11 C 0.13 2.25 10.65 -16.45 -0.18 2.08 16 12 C -0.22 -3.70 6.24 -103.41 -0.65 -4.35 16 13 C 0.09 1.28 9.68 -37.30 -0.36 0.92 16 14 C -0.29 -4.05 8.82 -39.34 -0.35 -4.40 16 15 C 0.58 8.44 7.60 -15.01 -0.11 8.32 16 16 O -0.56 -9.91 16.43 5.11 0.08 -9.82 16 17 N -0.62 -7.04 3.33 -173.96 -0.58 -7.62 16 18 C 0.10 0.84 6.48 -2.53 -0.02 0.82 16 19 C -0.11 -0.88 6.18 -24.58 -0.15 -1.03 16 20 C -0.13 -0.88 3.32 -89.92 -0.30 -1.18 16 21 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 22 C 0.53 4.31 7.29 -10.99 -0.08 4.23 16 23 N -0.85 -3.80 8.87 31.22 0.28 -3.52 16 24 O -0.54 -6.68 16.54 5.56 0.09 -6.59 16 25 C 0.12 1.11 6.47 -3.06 -0.02 1.09 16 26 C -0.08 -1.50 6.36 -104.93 -0.67 -2.16 16 27 C -0.09 -1.35 10.09 -39.38 -0.40 -1.75 16 28 C -0.14 -2.07 10.03 -39.57 -0.40 -2.47 16 29 C -0.12 -1.78 10.01 -39.56 -0.40 -2.17 16 30 C -0.10 -1.85 9.97 -39.42 -0.39 -2.24 16 31 C 0.10 1.89 6.79 -83.96 -0.57 1.32 16 32 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.05 0.97 7.17 -51.93 -0.37 0.60 16 34 H 0.04 0.85 7.57 -51.93 -0.39 0.46 16 35 H 0.17 2.39 7.19 -52.49 -0.38 2.01 16 36 H 0.13 1.93 7.45 -52.49 -0.39 1.54 16 37 H 0.12 1.44 5.56 -52.49 -0.29 1.15 16 38 H 0.09 0.70 7.12 -51.93 -0.37 0.33 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.88 7.41 -51.93 -0.38 0.49 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.40 0.72 8.83 -40.82 -0.36 0.36 16 43 H 0.40 1.48 8.93 -40.82 -0.36 1.12 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 46 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 47 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 48 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 49 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 412.45 15.07 6.22 6.22 Total: -1.00 -34.50 412.45 -10.30 -44.79 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.68 Total: 6.45 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -5.49 Total: -11.18 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.16 Total: -44.16 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.18 Total: -16.41 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.67 Total: 14.29 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.50 -10.30 -44.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041128813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.987 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds