Wall clock time and date at job start Tue Mar 31 2020 06:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99718 * 2 1 4 4 H 1.48511 * 109.46948 * 269.99774 * 3 2 1 5 5 H 1.48498 * 109.47773 * 29.99492 * 3 2 1 6 6 H 1.48500 * 109.47451 * 150.00186 * 3 2 1 7 7 C 1.37877 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99992 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99875 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.46744 * 180.02562 * 9 7 2 11 11 C 1.35606 * 124.77730 * 264.97012 * 10 9 7 12 12 C 1.36663 * 109.69614 * 180.02562 * 11 10 9 13 13 C 1.46374 * 126.79010 * 180.02562 * 12 11 10 14 14 C 1.35454 * 119.99880 * 0.02715 * 13 12 11 15 15 C 1.41494 * 120.00017 * 179.97438 * 14 13 12 16 16 O 1.21783 * 120.00182 * 359.97438 * 15 14 13 17 17 N 1.34786 * 119.99826 * 180.27130 * 15 14 13 18 18 C 1.47418 * 125.64551 * 359.75401 * 17 15 14 19 19 C 1.54911 * 104.83118 * 204.08766 * 18 17 15 20 20 C 1.55161 * 101.58148 * 322.99300 * 19 18 17 21 21 H 1.08998 * 110.71579 * 277.13734 * 20 19 18 22 22 C 1.50704 * 110.72170 * 154.04095 * 20 19 18 23 23 N 1.34771 * 119.99847 * 180.02562 * 22 20 19 24 24 O 1.21279 * 120.00007 * 359.97438 * 22 20 19 25 25 C 1.47019 * 125.64389 * 179.44142 * 17 15 14 26 26 C 1.47520 * 106.42691 * 0.26434 * 12 11 10 27 27 C 1.39258 * 133.96651 * 180.54369 * 26 12 11 28 28 C 1.37765 * 119.67551 * 179.58541 * 27 26 12 29 29 C 1.38744 * 120.29932 * 359.64783 * 28 27 26 30 30 C 1.37774 * 120.62806 * 0.02562 * 29 28 27 31 31 C 1.37987 * 124.78168 * 85.00211 * 10 9 7 32 32 H 0.96993 * 120.00241 * 0.02562 * 1 2 3 33 33 H 1.08990 * 109.46988 * 60.00355 * 9 7 2 34 34 H 1.08997 * 109.47099 * 299.99803 * 9 7 2 35 35 H 1.07999 * 125.15821 * 0.02969 * 11 10 9 36 36 H 1.08001 * 120.00491 * 180.02562 * 13 12 11 37 37 H 1.08002 * 120.00155 * 359.97438 * 14 13 12 38 38 H 1.08998 * 110.36824 * 322.92641 * 18 17 15 39 39 H 1.08998 * 110.36917 * 85.14521 * 18 17 15 40 40 H 1.09000 * 111.00416 * 81.06067 * 19 18 17 41 41 H 1.08997 * 111.00782 * 204.87887 * 19 18 17 42 42 H 0.97001 * 120.00142 * 359.97438 * 23 22 20 43 43 H 0.96995 * 119.99828 * 180.02562 * 23 22 20 44 44 H 1.09000 * 109.88823 * 298.39415 * 25 17 15 45 45 H 1.08993 * 109.88705 * 59.56726 * 25 17 15 46 46 H 1.08004 * 120.15835 * 359.23240 * 27 26 12 47 47 H 1.08005 * 119.85449 * 179.67286 * 28 27 26 48 48 H 1.08005 * 119.68520 * 180.02562 * 29 28 27 49 49 H 1.08008 * 120.02996 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.3493 -3.2722 1.1105 12 6 4.7604 -4.5264 0.7561 13 6 5.2183 -5.5859 1.6564 14 6 5.2633 -5.3669 2.9923 15 6 5.7053 -6.3912 3.8627 16 8 6.0449 -7.4699 3.4107 17 7 5.7450 -6.1751 5.1925 18 6 5.3632 -4.9234 5.8712 19 6 6.1384 -4.9471 7.2122 20 6 6.0779 -6.4532 7.5804 21 1 5.1333 -6.6932 8.0683 22 6 7.2416 -6.8345 8.4588 23 7 7.3726 -8.1047 8.8899 24 8 8.0606 -5.9986 8.7771 25 6 6.1699 -7.1509 6.2068 26 6 4.6571 -4.5996 -0.7136 27 6 4.9155 -5.5950 -1.6526 28 6 4.7033 -5.3425 -2.9902 29 6 4.2275 -4.1060 -3.4023 30 6 3.9613 -3.1146 -2.4834 31 6 4.1696 -3.3500 -1.1281 32 1 -0.4850 0.8400 -0.0004 33 1 3.8745 -0.6800 0.8911 34 1 3.8752 -0.6804 -0.8888 35 1 4.3089 -2.8936 2.1212 36 1 5.5201 -6.5422 1.2555 37 1 4.9618 -4.4105 3.3933 38 1 5.6632 -4.0618 5.2748 39 1 4.2887 -4.9027 6.0527 40 1 7.1689 -4.6200 7.0736 41 1 5.6358 -4.3398 7.9649 42 1 6.7177 -8.7734 8.6351 43 1 8.1213 -8.3500 9.4556 44 1 5.5112 -8.0191 6.1850 45 1 7.1983 -7.4584 6.0175 46 1 5.2860 -6.5582 -1.3342 47 1 4.9077 -6.1107 -3.7214 48 1 4.0642 -3.9190 -4.4534 49 1 3.5916 -2.1555 -2.8149 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041128813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:21 Heat of formation + Delta-G solvation = -19.511968 kcal Electronic energy + Delta-G solvation = -31403.760346 eV Core-core repulsion = 27102.238140 eV Total energy + Delta-G solvation = -4301.522206 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.26231 -41.48244 -40.34041 -38.11441 -37.98370 -35.85711 -34.77804 -34.69492 -33.06693 -32.32350 -31.37459 -30.19160 -29.81056 -28.70417 -26.28514 -24.74489 -23.90030 -23.48730 -23.01552 -22.07740 -20.95743 -20.59378 -19.37137 -19.23684 -18.80542 -18.29763 -17.83367 -17.51068 -17.29643 -16.90470 -16.42425 -16.37237 -16.20205 -15.84244 -15.47991 -15.13185 -14.99485 -14.90926 -14.67881 -14.49536 -14.37823 -14.19056 -14.10047 -13.76352 -13.47491 -13.40359 -13.28861 -12.82632 -12.64678 -12.60928 -12.47065 -12.38053 -12.28113 -12.03883 -11.85987 -11.84251 -11.70252 -11.21846 -11.14899 -10.94887 -10.91879 -10.67739 -10.06439 -9.63760 -9.10910 -8.42199 -8.22793 -6.53471 -0.19911 0.41581 0.83236 1.34397 1.34663 1.44534 1.51165 1.86326 2.03064 2.09546 2.24253 2.56420 2.63002 2.90875 3.06641 3.30063 3.53143 3.74943 3.80591 3.87064 3.92993 4.12709 4.19753 4.23042 4.30553 4.31776 4.34474 4.35326 4.54091 4.56436 4.62512 4.66053 4.71208 4.78011 4.83001 4.85311 4.94685 4.96260 5.10329 5.18884 5.21740 5.24087 5.47046 5.52877 5.66019 5.72442 5.82815 5.87617 5.95977 5.99122 6.36951 6.41544 6.42214 6.48782 6.53992 7.11675 7.19419 7.30280 8.74323 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.009251 B = 0.002173 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.097309 B =12885.112097 C =15362.479001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.023 3.977 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.235 1.235 7 C -0.551 4.551 8 H 0.028 0.972 9 C 0.212 3.788 10 N -0.452 5.452 11 C 0.113 3.887 12 C -0.214 4.214 13 C 0.072 3.928 14 C -0.274 4.274 15 C 0.572 3.428 16 O -0.599 6.599 17 N -0.622 5.622 18 C 0.094 3.906 19 C -0.111 4.111 20 C -0.116 4.116 21 H 0.147 0.853 22 C 0.527 3.473 23 N -0.836 5.836 24 O -0.586 6.586 25 C 0.120 3.880 26 C -0.106 4.106 27 C -0.092 4.092 28 C -0.139 4.139 29 C -0.109 4.109 30 C -0.134 4.134 31 C 0.066 3.934 32 H 0.273 0.727 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.195 0.805 36 H 0.125 0.875 37 H 0.141 0.859 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.418 0.582 43 H 0.408 0.592 44 H 0.088 0.912 45 H 0.053 0.947 46 H 0.139 0.861 47 H 0.155 0.845 48 H 0.150 0.850 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.314 -12.561 12.269 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.769 3.231 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.158 1.158 7 C -0.589 4.589 8 H 0.046 0.954 9 C 0.092 3.908 10 N -0.128 5.128 11 C -0.021 4.021 12 C -0.221 4.221 13 C 0.051 3.949 14 C -0.295 4.295 15 C 0.368 3.632 16 O -0.484 6.484 17 N -0.354 5.354 18 C -0.028 4.028 19 C -0.149 4.149 20 C -0.137 4.137 21 H 0.164 0.836 22 C 0.312 3.688 23 N -0.399 5.399 24 O -0.466 6.466 25 C -0.003 4.003 26 C -0.110 4.110 27 C -0.110 4.110 28 C -0.157 4.157 29 C -0.128 4.128 30 C -0.155 4.155 31 C -0.039 4.039 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.212 0.788 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.129 0.871 42 H 0.250 0.750 43 H 0.240 0.760 44 H 0.107 0.893 45 H 0.072 0.928 46 H 0.157 0.843 47 H 0.173 0.827 48 H 0.167 0.833 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.606 -12.005 12.059 21.177 hybrid contribution -0.390 0.488 0.054 0.627 sum 12.216 -11.517 12.113 20.703 Atomic orbital electron populations 1.70032 1.08430 1.28845 1.50071 1.25812 0.95594 1.03214 0.93136 0.85730 0.79830 0.77918 0.79653 1.19005 1.20392 1.15837 1.21273 0.90408 0.93583 1.53657 0.95391 1.19944 0.93834 0.77180 0.99836 1.44206 1.50459 1.13235 1.04886 1.22662 0.95615 0.91331 0.92518 1.19007 1.16793 0.95084 0.91222 1.21511 0.86329 0.95267 0.91834 1.21569 1.13303 1.01102 0.93534 1.16844 0.77456 0.87620 0.81290 1.90780 1.52615 1.28404 1.76577 1.48363 1.65947 1.16159 1.04978 1.22651 1.00683 0.86381 0.93106 1.22690 1.01619 0.94134 0.96504 1.22429 0.99346 0.97922 0.94030 0.83566 1.20504 0.85990 0.82683 0.79628 1.43774 1.32024 1.10198 1.53907 1.90753 1.45043 1.51253 1.59556 1.21777 1.00425 0.92487 0.85634 1.19369 1.04306 0.93977 0.93340 1.20717 0.99949 0.98022 0.92353 1.21242 1.01358 0.97606 0.95523 1.21113 0.99255 0.92787 0.99638 1.20371 1.04068 1.01128 0.89894 1.18668 1.03877 0.91974 0.89379 0.91813 0.91346 0.93498 0.78773 0.85677 0.84093 0.89304 0.88831 0.91281 0.87133 0.75030 0.76038 0.89348 0.92807 0.84336 0.82740 0.83252 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.86 13.96 21.45 0.30 -54.56 16 2 C 0.02 1.20 5.47 84.65 0.46 1.67 16 3 Si 0.95 38.84 27.47 68.60 1.88 40.72 16 4 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.24 -8.49 6.54 99.48 0.65 -7.84 16 7 C -0.55 -29.44 9.94 25.60 0.25 -29.18 16 8 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 9 C 0.21 9.07 4.77 85.63 0.41 9.48 16 10 N -0.45 -18.20 2.73 -518.95 -1.42 -19.61 16 11 C 0.11 3.87 10.65 83.74 0.89 4.76 16 12 C -0.21 -7.19 6.24 -19.08 -0.12 -7.30 16 13 C 0.07 2.14 9.68 23.74 0.23 2.37 16 14 C -0.27 -7.27 8.82 22.43 0.20 -7.07 16 15 C 0.57 16.09 7.60 85.04 0.65 16.74 16 16 O -0.60 -21.01 16.43 -4.61 -0.08 -21.09 16 17 N -0.62 -13.02 3.33 -822.46 -2.74 -15.75 16 18 C 0.09 1.37 6.48 86.86 0.56 1.93 16 19 C -0.11 -1.48 6.18 31.99 0.20 -1.29 16 20 C -0.12 -1.30 3.32 -10.34 -0.03 -1.33 16 21 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 22 C 0.53 7.75 7.29 87.66 0.64 8.39 16 23 N -0.84 -5.78 8.87 -173.54 -1.54 -7.32 16 24 O -0.59 -14.32 16.54 -3.03 -0.05 -14.37 16 25 C 0.12 1.94 6.47 86.74 0.56 2.50 16 26 C -0.11 -3.82 6.36 -20.06 -0.13 -3.94 16 27 C -0.09 -2.77 10.09 22.40 0.23 -2.54 16 28 C -0.14 -3.69 10.03 22.28 0.22 -3.47 16 29 C -0.11 -3.17 10.01 22.28 0.22 -2.95 16 30 C -0.13 -4.92 9.97 22.37 0.22 -4.70 16 31 C 0.07 2.62 6.79 38.91 0.26 2.88 16 32 H 0.27 14.81 8.31 -92.71 -0.77 14.03 16 33 H 0.07 2.64 7.17 -2.39 -0.02 2.62 16 34 H 0.05 1.94 7.57 -2.39 -0.02 1.92 16 35 H 0.20 5.28 7.19 -2.91 -0.02 5.26 16 36 H 0.13 3.78 7.45 -2.91 -0.02 3.76 16 37 H 0.14 3.09 5.56 -2.91 -0.02 3.07 16 38 H 0.09 1.26 7.12 -2.39 -0.02 1.24 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.27 7.41 -2.39 -0.02 1.26 16 41 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.42 0.41 8.83 -92.71 -0.82 -0.41 16 43 H 0.41 2.32 8.93 -92.71 -0.83 1.49 16 44 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.05 1.05 7.82 -2.39 -0.02 1.03 16 46 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 47 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 48 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 49 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -80.17 412.45 1.60 -78.56 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.69 Total: 26.47 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 5.93 Total: -13.07 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -5.39 Total: -97.24 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.13 Total: -35.46 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.88 Total: 40.72 kcal Total: -80.17 1.60 -78.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041128813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.050 kcal (2) G-P(sol) polarization free energy of solvation -80.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds