Wall clock time and date at job start Tue Mar 31 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46794 * 2 1 4 4 N 1.46499 * 109.47327 * 240.00127 * 2 1 3 5 5 C 1.34774 * 120.00526 * 84.99505 * 4 2 1 6 6 O 1.21592 * 119.99227 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00116 * 179.97438 * 5 4 2 8 8 C 1.40028 * 119.99806 * 175.49534 * 7 5 4 9 9 C 1.38909 * 120.00077 * 214.85557 * 8 7 5 10 10 C 1.38013 * 119.99700 * 179.79158 * 9 8 7 11 11 C 1.38902 * 120.00060 * 0.46302 * 10 9 8 12 12 O 1.35782 * 120.00000 * 179.76797 * 11 10 9 13 13 C 1.34805 * 117.00513 * 185.36099 * 12 11 10 14 14 H 1.08009 * 119.99693 * 354.96543 * 13 12 11 15 15 C 1.38627 * 120.00663 * 174.96644 * 13 12 11 16 16 N 1.31573 * 120.00492 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99483 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46732 * 90.00585 * 17 15 13 19 19 H 1.48500 * 109.46730 * 210.00284 * 17 15 13 20 20 H 1.48496 * 109.47440 * 330.00055 * 17 15 13 21 21 C 1.38900 * 120.00145 * 359.78629 * 11 10 9 22 22 C 1.38012 * 120.00336 * 359.97438 * 21 11 10 23 23 C 1.50702 * 109.47234 * 119.99696 * 2 1 3 24 24 C 1.33991 * 124.92239 * 260.00447 * 23 2 1 25 25 C 1.46785 * 106.18581 * 179.97438 * 24 23 2 26 26 C 1.39407 * 134.37066 * 179.97438 * 25 24 23 27 27 C 1.36734 * 119.71405 * 180.02562 * 26 25 24 28 28 C 1.38741 * 120.41814 * 0.02562 * 27 26 25 29 29 C 1.37845 * 120.68735 * 0.02562 * 28 27 26 30 30 C 1.38939 * 119.81591 * 359.97436 * 29 28 27 31 31 O 1.34448 * 124.92163 * 79.97744 * 23 2 1 32 32 H 1.08994 * 109.46903 * 60.00648 * 1 2 3 33 33 H 1.09005 * 109.46619 * 179.97438 * 1 2 3 34 34 H 1.08989 * 109.47248 * 299.99955 * 1 2 3 35 35 H 0.97003 * 119.99662 * 264.99717 * 4 2 1 36 36 H 0.96994 * 120.00124 * 355.49831 * 7 5 4 37 37 H 1.07995 * 120.00048 * 0.02562 * 9 8 7 38 38 H 1.08000 * 119.99478 * 180.22859 * 10 9 8 39 39 H 0.96995 * 120.00393 * 179.97438 * 16 15 13 40 40 H 1.08004 * 119.99742 * 179.97438 * 21 11 10 41 41 H 1.08003 * 119.99741 * 179.97438 * 22 21 11 42 42 H 1.08004 * 126.90923 * 359.97438 * 24 23 2 43 43 H 1.08001 * 120.13922 * 0.03496 * 26 25 24 44 44 H 1.08004 * 119.78958 * 180.02562 * 27 26 25 45 45 H 1.08003 * 119.65420 * 179.97438 * 28 27 26 46 46 H 1.08004 * 120.09219 * 179.70412 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8583 1.1615 -2.4116 7 7 2.5969 -0.6536 -3.4574 8 6 2.6415 0.0187 -4.6849 9 6 2.3867 -0.6703 -5.8639 10 6 2.4264 -0.0067 -7.0733 11 6 2.7305 1.3480 -7.1125 12 8 2.7742 1.9999 -8.3029 13 6 3.1831 3.2842 -8.2828 14 1 3.3797 3.7737 -7.3402 15 6 3.3513 3.9770 -9.4717 16 7 3.7508 5.2304 -9.4521 17 14 3.0119 3.1302 -11.1019 18 1 1.5887 3.3290 -11.4760 19 1 3.8858 3.7112 -12.1527 20 1 3.2917 1.6776 -10.9729 21 6 2.9904 2.0359 -5.9341 22 6 2.9459 1.3735 -4.7242 23 6 2.0324 -0.7103 1.2305 24 6 2.4679 -0.1031 2.3427 25 6 2.8535 -1.1741 3.2694 26 6 3.3713 -1.2041 4.5634 27 6 3.6285 -2.4058 5.1628 28 6 3.3779 -3.5937 4.4912 29 6 2.8671 -3.5838 3.2109 30 6 2.5986 -2.3734 2.5837 31 8 2.1081 -2.0453 1.3716 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 2.2492 -1.6317 -1.1525 36 1 2.8897 -1.5764 -3.3990 37 1 2.1538 -1.7245 -5.8337 38 1 2.2246 -0.5417 -7.9896 39 1 3.8689 5.7149 -10.2840 40 1 3.2273 3.0892 -5.9647 41 1 3.1484 1.9083 -3.8080 42 1 2.5239 0.9606 2.5214 43 1 3.5683 -0.2821 5.0902 44 1 4.0293 -2.4305 6.1654 45 1 3.5860 -4.5360 4.9762 46 1 2.6801 -4.5141 2.6953 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043572471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:52 Heat of formation + Delta-G solvation = 12.831383 kcal Electronic energy + Delta-G solvation = -30517.623846 eV Core-core repulsion = 26147.096969 eV Total energy + Delta-G solvation = -4370.526877 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.94039 -40.46263 -38.98685 -38.36864 -37.03178 -35.66505 -34.07957 -33.22549 -32.30649 -31.20464 -30.85587 -30.24795 -28.95949 -27.90615 -25.21068 -24.53888 -23.27520 -22.66134 -22.14199 -21.58021 -21.03454 -20.50300 -18.74122 -18.02873 -17.77998 -17.62824 -17.19551 -16.63049 -16.53730 -15.87402 -15.43704 -15.26439 -14.79806 -14.52693 -14.39382 -14.00038 -13.89493 -13.79477 -13.78818 -13.72390 -13.50264 -13.13035 -12.76914 -12.69526 -12.44994 -12.40425 -12.26617 -12.20435 -11.84588 -11.68427 -11.60826 -11.39868 -10.94110 -10.72497 -10.56375 -10.28220 -10.00286 -9.68893 -9.40088 -9.23233 -9.07014 -8.73817 -8.60391 -8.25312 -7.02780 -6.37903 -4.03745 0.43549 0.91776 1.82811 2.07766 2.16470 2.17197 2.60295 3.20140 3.26263 3.27783 3.28262 3.42061 3.82407 4.13529 4.20872 4.26366 4.50046 4.52377 4.61444 4.65138 4.78271 4.82214 4.87767 4.88279 5.00917 5.13872 5.21617 5.33567 5.40310 5.50726 5.58051 5.67413 5.71767 5.80447 5.90039 5.96015 5.99452 6.07216 6.09849 6.12055 6.22184 6.29514 6.57968 6.65446 6.74109 6.85714 7.10559 7.15980 7.34135 7.62021 7.82960 7.94848 8.06394 8.57075 8.97187 9.59301 10.69757 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.026654 B = 0.001495 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.240674 B =18726.860872 C =19069.652965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.244 3.756 3 H 0.122 0.878 4 N -0.745 5.745 5 C 0.703 3.297 6 O -0.571 6.571 7 N -0.673 5.673 8 C 0.061 3.939 9 C -0.097 4.097 10 C -0.177 4.177 11 C 0.150 3.850 12 O -0.218 6.218 13 C -0.388 4.388 14 H 0.107 0.893 15 C 0.063 3.937 16 N -0.880 5.880 17 Si 0.906 3.094 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.206 4.206 22 C -0.066 4.066 23 C 0.030 3.970 24 C -0.191 4.191 25 C -0.129 4.129 26 C -0.070 4.070 27 C -0.137 4.137 28 C -0.094 4.094 29 C -0.107 4.107 30 C 0.054 3.946 31 O -0.190 6.190 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.400 0.600 36 H 0.399 0.601 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.162 0.838 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.135 0.865 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 -18.487 28.202 33.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.139 3.861 3 H 0.140 0.860 4 N -0.402 5.402 5 C 0.404 3.596 6 O -0.447 6.447 7 N -0.321 5.321 8 C -0.032 4.032 9 C -0.118 4.118 10 C -0.197 4.197 11 C 0.098 3.902 12 O -0.123 6.123 13 C -0.464 4.464 14 H 0.124 0.876 15 C -0.140 4.140 16 N -0.518 5.518 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.184 1.184 21 C -0.226 4.226 22 C -0.086 4.086 23 C -0.018 4.018 24 C -0.211 4.211 25 C -0.130 4.130 26 C -0.088 4.088 27 C -0.155 4.155 28 C -0.112 4.112 29 C -0.125 4.125 30 C 0.006 3.994 31 O -0.091 6.091 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.233 0.767 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.180 0.820 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.153 0.847 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.619 -17.447 27.595 32.753 hybrid contribution 0.188 -0.962 -0.420 1.067 sum -2.431 -18.410 27.175 32.914 Atomic orbital electron populations 1.22269 0.93207 1.03086 1.03773 1.19405 0.94597 0.95396 0.76731 0.86001 1.45114 1.72545 1.13926 1.08626 1.15871 0.78380 0.85247 0.80102 1.90955 1.56287 1.13720 1.83761 1.42276 1.67246 1.15880 1.06650 1.17090 1.10335 0.92823 0.82923 1.20318 1.01791 0.98842 0.90832 1.19959 1.10176 0.92086 0.97470 1.19146 0.94065 0.91183 0.85793 1.83560 1.75426 1.26692 1.26589 1.20778 1.45329 0.83473 0.96792 0.87576 1.24461 0.95646 0.95079 0.98848 1.69655 1.44437 1.08741 1.28944 0.86176 0.78535 0.80638 0.81511 1.19924 1.20874 1.18364 1.21232 1.08440 1.01572 0.91330 1.20942 0.96805 0.92884 0.97965 1.22452 1.01340 0.80275 0.97771 1.22267 1.06065 0.99806 0.92925 1.19940 1.04311 0.92600 0.96145 1.20327 0.97249 0.98707 0.92516 1.20808 1.02018 0.92032 1.00615 1.20956 0.98129 0.98844 0.93316 1.19970 1.03013 0.94386 0.95139 1.19637 0.99950 0.95674 0.84106 1.83907 1.69154 1.23598 1.32490 0.90208 0.91932 0.90967 0.76604 0.76695 0.86630 0.86093 0.91096 0.84597 0.85263 0.82010 0.85386 0.85271 0.84725 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.47 37.16 0.35 -1.08 16 2 C 0.24 2.29 3.01 -69.08 -0.21 2.08 16 3 H 0.12 1.23 7.55 -51.93 -0.39 0.83 16 4 N -0.75 -7.52 5.07 -59.81 -0.30 -7.82 16 5 C 0.70 9.79 8.37 -86.92 -0.73 9.06 16 6 O -0.57 -10.20 13.44 5.28 0.07 -10.13 16 7 N -0.67 -8.90 5.35 -14.18 -0.08 -8.98 16 8 C 0.06 1.05 6.30 -83.61 -0.53 0.52 16 9 C -0.10 -1.60 9.96 -39.42 -0.39 -1.99 16 10 C -0.18 -3.44 9.99 -39.42 -0.39 -3.84 16 11 C 0.15 3.50 6.65 -39.09 -0.26 3.24 16 12 O -0.22 -5.77 8.58 0.02 0.00 -5.77 16 13 C -0.39 -11.05 9.94 30.88 0.31 -10.75 16 14 H 0.11 3.10 5.43 -52.48 -0.28 2.82 16 15 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 16 N -0.88 -25.65 13.96 55.48 0.77 -24.87 16 17 Si 0.91 21.78 28.62 -169.99 -4.86 16.91 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 21 C -0.21 -4.63 9.16 -39.42 -0.36 -4.99 16 22 C -0.07 -1.31 8.69 -39.41 -0.34 -1.66 16 23 C 0.03 0.27 6.05 -35.80 -0.22 0.05 16 24 C -0.19 -1.66 10.99 -37.62 -0.41 -2.07 16 25 C -0.13 -1.18 6.40 -105.16 -0.67 -1.85 16 26 C -0.07 -0.51 10.05 -39.69 -0.40 -0.90 16 27 C -0.14 -0.81 9.98 -39.94 -0.40 -1.21 16 28 C -0.09 -0.55 10.01 -39.54 -0.40 -0.94 16 29 C -0.11 -0.77 10.07 -39.47 -0.40 -1.17 16 30 C 0.05 0.50 7.42 -38.48 -0.29 0.22 16 31 O -0.19 -1.84 10.19 3.91 0.04 -1.80 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.52 8.14 -51.94 -0.42 0.10 16 35 H 0.40 3.19 8.29 -40.82 -0.34 2.85 16 36 H 0.40 3.77 8.84 -40.82 -0.36 3.41 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.14 3.23 5.63 -52.48 -0.30 2.93 16 41 H 0.13 2.60 6.22 -52.48 -0.33 2.27 16 42 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 44 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 45 H 0.13 0.42 8.06 -52.48 -0.42 -0.01 16 46 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -33.67 395.63 -9.59 -43.25 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.36 Total: 8.84 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -5.83 Total: -15.60 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.40 Total: -41.67 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.11 Total: -17.69 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.86 Total: 16.91 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.67 -9.59 -43.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043572471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.085 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds